Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0359371 Rosa chinensis HOM05D000590 ORTHO05D006825 3.0e-187 658.3 317 100.0
FAN06G0495 Fragaria x ananassa HOM05D000590 ORTHO05D006825 1.2e-172 609.8 319 91.8
FAN10G3131 Fragaria x ananassa HOM05D000590 ORTHO05D006825 7.9e-172 607.1 319 91.2
FAN06G0513 Fragaria x ananassa HOM05D000590 ORTHO05D006825 1.0e-171 606.7 319 91.2
FAN10G1076 Fragaria x ananassa HOM05D000590 ORTHO05D006825 1.4e-171 606.3 319 91.2
FvH4_7g16360 Fragaria vesca HOM05D000590 ORTHO05D006825 8.8e-171 603.6 319 91.5
FAN01G2486 Fragaria x ananassa HOM05D000590 ORTHO05D006825 1.1e-170 603.2 319 90.6
FAN03G1068 Fragaria x ananassa HOM05D000590 ORTHO05D006825 5.9e-167 590.9 308 91.6
Prupe.2G187500 Prunus persica HOM05D000590 ORTHO05D006825 5.0e-142 508.1 320 77.8
MD01G1080100 Malus domestica HOM05D000590 ORTHO05D006825 4.9e-137 491.5 320 75.0
Haze_15659 Corylus avellana HOM05D000590 ORTHO05D006825 1.7e-129 466.5 319 71.8
Cfa003800 Carpinus fangiana HOM05D000590 ORTHO05D001713 1.2e-127 460.3 302 73.2
GSVIVG01027095001 Vitis vinifera HOM05D000590 ORTHO05D006825 1.6e-124 449.9 300 69.7
GSVIVG01027098001 Vitis vinifera HOM05D000590 ORTHO05D006825 1.0e-123 447.2 300 69.7
Phvul.010G113800 Phaseolus vulgaris HOM05D000590 ORTHO05D006825 1.4e-123 446.8 320 67.5
Psat4g160760 Pisum sativum HOM05D000590 ORTHO05D006825 4.0e-123 445.3 302 69.5
Glyma.16G025000 Glycine max HOM05D000590 ORTHO05D006825 1.2e-122 443.7 320 67.8
CsaV3_6G007130 Cucumis sativus L. HOM05D000590 ORTHO05D006825 3.7e-121 438.7 319 68.0
Oeu015362.1 Olea europaea HOM05D000590 ORTHO05D006825 3.7e-121 438.7 301 68.8
Solyc01g095870.3 Solanum lycopersicum HOM05D000590 ORTHO05D006825 4.1e-120 435.3 300 68.0
Sopen01g039610 Solanum pennellii HOM05D000590 ORTHO05D006825 4.1e-120 435.3 300 68.0
MELO3C022415.2 Cucumis melo HOM05D000590 ORTHO05D006825 5.4e-120 434.9 319 67.7
Lj3g0003332 Lotus japonicus HOM05D000590 ORTHO05D006825 2.0e-119 433.0 303 67.0
CANSAT56G2355 Cannabis sativa HOM05D000590 ORTHO05D006825 6.0e-119 431.4 318 65.1
Peaxi162Scf00786g00323 Petunia axillaris HOM05D000590 ORTHO05D006825 6.0e-119 431.4 302 66.9
Migut.B01870 Erythranthe guttata HOM05D000590 ORTHO05D006825 7.8e-119 431.0 300 64.0
QL04p061137 Quercus lobata HOM05D000590 ORTHO05D006825 2.3e-118 429.5 300 68.7
Rhsim01G0172200 Rhododendron simsii HOM05D000590 ORTHO05D006825 2.3e-118 429.5 274 71.9
SalBow3G4091 Salvia bowleyana HOM05D000590 ORTHO05D006825 2.3e-118 429.5 302 65.6
Lj7A501T47 Lonicera japonica HOM05D000590 ORTHO05D006825 6.6e-118 427.9 274 70.8
AUR62004487 Chenopodium quinoa HOM05D000590 ORTHO05D006825 1.9e-117 426.4 304 63.8
TWI59G0780 Tripterygium wilfordii HOM05D000590 ORTHO05D006825 1.9e-117 426.4 306 68.6
AUR62023466 Chenopodium quinoa HOM05D000590 ORTHO05D006825 5.6e-117 424.9 303 63.7
PGR031G1800 Punica granatum HOM05D000590 ORTHO05D006825 5.6e-117 424.9 305 64.9
TWI14G0815 Tripterygium wilfordii HOM05D000590 ORTHO05D006825 9.5e-117 424.1 307 66.1
HanXRQChr04g0120221 Helianthus annuus HOM05D000590 ORTHO05D006825 6.2e-116 421.4 301 65.4
TPR.G15352 Trifolium pratense HOM05D000590 ORTHO05D006825 6.2e-116 421.4 273 71.1
Cc02_g39290 Coffea canephora HOM05D000590 ORTHO05D006825 1.2e-114 417.2 302 64.6
Lsat_1_v5_gn_7_1240 Lactuca sativa HOM05D000590 ORTHO05D006825 2.0e-114 416.4 276 69.6
Nn2g14772 Nelumbo nucifera HOM05D000590 ORTHO05D006825 2.0e-114 416.4 303 63.4
Dinv35112 Davidia involucrata HOM05D000590 ORTHO05D006825 3.4e-114 415.6 301 64.5
Potri.014G098300 Populus trichocarpa HOM05D000590 ORTHO05D006825 1.4e-112 410.2 308 63.0
Ca_23539_v3 Cicer arietinum L. HOM05D000590 ORTHO05D006825 1.9e-112 409.8 284 67.6
Nitab4.5_0004999g0020 Nicotiana tabacum HOM05D000590 ORTHO05D006825 3.2e-112 409.1 273 68.5
Nitab4.5_0000838g0230 Nicotiana tabacum HOM05D000590 ORTHO05D006825 2.1e-111 406.4 286 66.1
Actinidia28121 Actinidia chinensis HOM05D000590 ORTHO05D006825 3.5e-111 405.6 274 69.0
Gorai.004G043900 Gossypium raimondii HOM05D000590 ORTHO05D006825 7.8e-111 404.4 303 60.7
Manes.01G246600 Manihot esculenta HOM05D000590 ORTHO05D006825 7.8e-111 404.4 303 62.4
CiPaw.02G040500 Carya illinoinensis HOM05D000590 ORTHO05D006825 1.3e-110 403.7 319 62.7
Gohir.D08G044900 Gossypium hirsutum HOM05D000590 ORTHO05D006825 2.3e-110 402.9 303 60.4
AT3G61730 Arabidopsis thaliana HOM05D000590 ORTHO05D006825 5.1e-110 401.7 294 64.3
Medtr8g027735 Medicago truncatula HOM05D000590 ORTHO05D006825 6.6e-110 401.4 279 67.0
Gohir.A08G034400 Gossypium hirsutum HOM05D000590 ORTHO05D006825 1.1e-109 400.6 303 60.4
Migut.N01547 Erythranthe guttata HOM05D000590 ORTHO05D006825 1.5e-109 400.2 302 60.3
Eucgr.D02371 Eucalyptus grandis HOM05D000590 ORTHO05D006825 1.5e-109 400.2 302 63.2
BcaB02g08143 Brassica carinata HOM05D000590 ORTHO05D006825 1.9e-109 399.8 294 64.6
CAN.G986.8 Capsicum annuum HOM05D000590 ORTHO05D006825 1.9e-109 399.8 272 66.9
EL10Ac1g00275 Beta vulgaris HOM05D000590 ORTHO05D006825 2.5e-109 399.4 271 65.7
Duzib133G1228 Durio zibethinus HOM05D000590 ORTHO05D006825 4.3e-109 398.7 303 62.0
SGA_v2.0_scaffold5G03015 Striga asiatica HOM05D000590 ORTHO05D006825 7.3e-109 397.9 319 60.5
AL5G44280 Arabidopsis lyrata HOM05D000590 ORTHO05D006825 1.2e-108 397.1 294 63.9
THA.LOC104817360 Tarenaya hassleriana HOM05D000590 ORTHO05D006825 2.1e-108 396.4 315 61.9
CARHR172060 Cardamine hirsuta HOM05D000590 ORTHO05D006825 5.8e-106 388.3 302 61.6
Thhalv10006430m.g Eutrema salsugineum HOM05D000590 ORTHO05D006825 7.6e-106 387.9 294 62.2
BolC6t37952H Brassica oleracea HOM05D000590 ORTHO05D006825 2.2e-105 386.3 296 62.2
DCAR_006973 Daucus carota HOM05D000590 ORTHO05D006825 2.2e-105 386.3 305 59.7
vmacro12678 Vaccinium macrocarpon HOM05D000590 ORTHO05D001713 1.4e-104 383.6 333 58.3
AT5G36000 Arabidopsis thaliana HOM05D000590 ORTHO05D006825 1.9e-104 383.3 303 60.1
Aqoxy5G04231 Aquilegia oxysepala HOM05D000590 ORTHO05D006825 3.2e-104 382.5 263 67.7
THA.LOC104802069 Tarenaya hassleriana HOM05D000590 ORTHO05D006825 3.2e-104 382.5 302 61.9
Aa31LG10G15730 Aethionema arabicum HOM05D000590 ORTHO05D001713 4.1e-104 382.1 303 59.7
BraA04t15812Z Brassica rapa HOM05D000590 ORTHO05D006825 7.1e-104 381.3 296 62.8
Sed0003230 Sechium edule HOM05D000590 ORTHO05D006825 7.1e-104 381.3 315 63.2
Ciclev10023676m.g Citrus clementina HOM05D000590 ORTHO05D006825 3.5e-103 379.0 274 61.3
Ah.05g179600 Amaranthus hybridus HOM05D000590 ORTHO05D006825 7.8e-103 377.9 281 62.3
Duzib138G1692 Durio zibethinus HOM05D000590 ORTHO05D006825 1.3e-102 377.1 279 63.8
PSO478G0645 Papaver somniferum HOM05D000590 ORTHO05D006825 3.3e-101 372.5 282 59.2
PSO782G3674 Papaver somniferum HOM05D000590 ORTHO05D006825 1.6e-100 370.2 319 55.8
ATR0602G065 Amborella trichopoda HOM05D000590 ORTHO05D006825 3.1e-99 365.9 301 56.8
Sabra14G0072100 Salix brachista HOM05D000590 ORTHO05D001713 1.5e-98 363.6 285 61.4
Atru.chr5.661 Acer truncatum HOM05D000590 ORTHO05D006825 1.7e-97 360.1 301 55.8
Oeu004946.1 Olea europaea HOM05D000590 ORTHO05D006825 6.4e-97 358.2 271 63.8
ECA236G1053 Erigeron canadensis HOM05D000590 ORTHO05D001713 3.2e-96 355.9 273 60.8
BraA07t30209Z Brassica rapa HOM05D004730 ORTHO05D005705 2.5e-93 346.3 268 61.6
C06p27910 Brassica napus HOM05D000590 ORTHO05D006825 5.3e-91 338.6 290 57.2
A04p00950 Brassica napus HOM05D000590 ORTHO05D006825 4.9e-89 332.0 293 56.3
PGSC0003DMG400000222 Solanum tuberosum HOM05D000590 ORTHO05D006825 4.6e-87 325.5 236 66.9
ClCG06G001200 Citrullus lanatus HOM05D000590 ORTHO05D006825 1.3e-86 323.9 326 55.2
C06p27850 Brassica napus HOM05D004730 ORTHO05D006825 3.3e-85 319.3 268 58.2
Sp5g01640 Schrenkiella parvula HOM05D000590 ORTHO05D006825 8.1e-84 314.7 302 53.0
A07p25690 Brassica napus HOM05D004730 ORTHO05D005705 5.3e-83 312.0 289 55.4
Carub.0005s2847 Capsella rubella HOM05D000590 ORTHO05D006825 2.9e-81 306.2 230 63.0
Thecc.01G343200 Theobroma cacao HOM05D000590 ORTHO05D006825 1.4e-80 303.9 210 64.8
Cpa.g.sc96.9 Carica papaya HOM05D000590 ORTHO05D006825 1.0e-78 297.7 337 46.6
MBI06_g08454_MAGBIO Magnolia biondii HOM05D000590 ORTHO05D006825 2.5e-77 293.1 274 52.6
SEGI_08329 Sequoiadendron giganteum HOM05D000590 ORTHO05D006825 2.5e-77 293.1 274 52.2
VMungo0331G1406 Vigna mungo HOM05D000590 ORTHO05D000717 4.3e-77 292.4 189 72.5
Lalb_Chr10g0100491 Lupinus albus HOM05D000590 ORTHO05D006825 5.6e-77 292.0 190 72.1
MSTRG.17339 Avicennia marina HOM05D000590 ORTHO05D006825 9.6e-77 291.2 190 71.1
COL.COLO4_06291 Corchorus olitorius HOM05D000590 ORTHO05D000717 3.7e-76 289.3 276 53.6
BcaB02g08144 Brassica carinata HOM05D000590 ORTHO05D006825 5.3e-75 285.4 315 49.2
C04p31120 Brassica napus HOM05D000590 ORTHO05D006825 1.0e-73 281.2 255 55.3
TAR375G0589 Trochodendron aralioides HOM05D000590 ORTHO05D006825 8.7e-70 268.1 176 68.8
Os01g0219200 Oryza sativa ssp. japonica HOM05D000590 ORTHO05D006825 1.1e-67 261.2 304 46.1
Pp3c6_8570 Physcomitrium patens HOM05D000590 ORTHO05D006825 9.0e-67 258.1 295 45.8
HPP92_002828 Vanilla planifolia HOM05D000590 ORTHO05D006825 3.6e-63 246.1 312 42.0
AagrBONN_evm.TU.Sc2ySwM_344.2724 Anthoceros agrestis HOM05D000590 ORTHO05D006825 5.1e-62 242.3 250 48.4
SMO164G0232 Selaginella moellendorffii HOM05D000590 ORTHO05D006825 2.5e-61 240.0 279 44.8
BcaC02g10247 Brassica carinata HOM05D000590 ORTHO05D006825 1.3e-60 237.7 190 62.1
SMO200G0118 Selaginella moellendorffii HOM05D000590 ORTHO05D006825 4.1e-59 232.6 281 44.1
arahy.Tifrunner.gnm1.ann1.0G81PD Arachis hypogaea HOM05D000590 ORTHO05D006825 3.2e-56 223.0 207 56.0
Glyma.07G056100 Glycine max HOM05D000590 ORTHO05D006825 3.2e-56 223.0 191 55.5
GSVIVG01027114001 Vitis vinifera HOM05D000590 ORTHO05D006825 1.4e-54 217.6 187 56.1
Sc26g0000660 Simmondsia chinensis HOM05D000590 ORTHO05D006825 5.3e-51 205.7 188 51.6
CDE02G2715 Ceratophyllum demersum HOM05D000590 ORTHO05D006825 1.2e-50 204.5 192 53.6
SMO338G0043 Selaginella moellendorffii HOM05D004142 ORTHO05D005411 2.2e-49 200.3 271 41.0
CBR_g49078 Chara braunii HOM05D000590 ORTHO05D006825 3.8e-49 199.5 309 34.6
CBR_g71803 Chara braunii HOM05D000590 ORTHO05D006825 3.8e-49 199.5 317 35.0
CSS0016052 Camellia sinensis var. sinensis HOM05D000590 ORTHO05D006825 9.4e-48 194.9 117 75.2
arahy.Tifrunner.gnm1.ann1.AM6JUY Arachis hypogaea HOM05D000590 ORTHO05D006825 1.2e-47 194.5 126 69.8
Mapoly0251s0003 Marchantia polymorpha HOM05D000590 ORTHO05D006825 6.1e-47 192.2 275 39.3
Zm00001eb338700 Zea mays HOM05D000590 ORTHO05D006825 3.7e-44 183.0 252 38.1
Sc26g0000670 Simmondsia chinensis HOM05D000590 ORTHO05D006825 4.1e-43 179.5 119 68.9
HanXRQChr09g0243571 Helianthus annuus HOM05D000590 ORTHO05D006825 3.5e-42 176.4 127 59.8
AT3G62500 Arabidopsis thaliana HOM05D000590 ORTHO05D006825 2.9e-41 173.3 187 51.3
Rhsim02G0230200 Rhododendron simsii HOM05D000590 ORTHO05D006825 8.5e-41 171.8 220 40.9
CSS0003243 Camellia sinensis var. sinensis HOM05D000590 ORTHO05D006825 1.5e-40 171.0 132 62.1
CDE02G3030 Ceratophyllum demersum HOM05D000590 ORTHO05D006825 3.6e-39 166.4 119 65.5
PSO063G6641 Papaver somniferum HOM05D000590 ORTHO05D006825 1.5e-37 161.0 123 61.8
TPR.G3009 Trifolium pratense HOM05D000590 ORTHO05D006825 4.1e-35 152.9 106 66.0
SEGI_01413 Sequoiadendron giganteum HOM05D000590 ORTHO05D006825 1.9e-32 144.1 119 54.6
VMungo0331G1881 Vigna mungo HOM05D000590 ORTHO05D006825 1.1e-27 128.3 121 54.5
Lalb_Chr10g0100501 Lupinus albus HOM05D000590 ORTHO05D006825 2.0e-26 124.0 105 59.0
GSVIVG01027101001 Vitis vinifera HOM05D000590 ORTHO05D006825 3.0e-22 110.2 93 55.9
arahy.Tifrunner.gnm1.ann1.06LZL4 Arachis hypogaea HOM05D000590 ORTHO05D006825 5.2e-22 109.4 64 78.1
CARHR055570 Cardamine hirsuta HOM05D000590 ORTHO05D006825 8.8e-22 108.6 91 56.0
BolC4t24651H Brassica oleracea HOM05D000590 ORTHO05D006825 2.6e-21 107.1 131 42.0
SHI13292 Sapria himalayana HOM05D000590 ORTHO05D006825 4.9e-20 102.8 73 65.8
Sabra02G0141900 Salix brachista HOM05D000590 ORTHO05D006825 4.5e-18 96.3 175 37.1
GSVIVG01027108001 Vitis vinifera HOM05D000590 ORTHO05D006825 2.9e-17 93.6 62 64.5
SHI13291 Sapria himalayana HOM05D000590 ORTHO05D006825 8.6e-17 92.0 65 69.2
BcaC02g10248 Brassica carinata HOM05D000590 ORTHO05D006825 5.2e-14 82.8 63 55.6
Zm00001eb119810 Zea mays HOM05D000590 ORTHO05D006825 5.2e-14 82.8 104 40.4
unitig_747.g21341 Utricularia gibba HOM05D000590 ORTHO05D006825 2.9e-12 77.0 61 55.7
Zm00001eb197190 Zea mays HOM05D002169 ORTHO05D023180 4.6e-10 69.7 102 37.3
PSO210G5020 Papaver somniferum HOM05D001459 ORTHO05D003498 2.3e-09 67.4 52 50.0
MD07G1149100 Malus domestica HOM05D000590 ORTHO05D006825 9.5e-08 62.0 43 62.8
Eucgr.A01039 Eucalyptus grandis HOM05D004982 ORTHO05D002186 6.8e-06 55.8 95 32.6


User provided reference genes

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