Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0358991 Rosa chinensis HOM05D007041 ORTHO05D008036 2.1e-65 252.3 135 100.0
FAN03G1744 Fragaria x ananassa HOM05D007041 ORTHO05D008036 5.4e-53 211.1 139 82.7
FAN10G1361 Fragaria x ananassa HOM05D007041 ORTHO05D008036 1.7e-51 206.1 138 84.1
FvH4_7g16050 Fragaria vesca HOM05D007041 ORTHO05D008036 3.9e-51 204.9 138 83.3
FAN06G2039 Fragaria x ananassa HOM05D007041 ORTHO05D008036 7.3e-50 200.7 138 81.9
FAN10G2988 Fragaria x ananassa HOM05D007041 ORTHO05D008036 4.0e-48 194.9 138 82.6
FAN06G3979 Fragaria x ananassa HOM05D007041 ORTHO05D008036 6.4e-30 134.4 91 86.8
Prupe.2G184300 Prunus persica HOM05D007041 ORTHO05D008036 4.6e-28 128.3 143 53.8
MD07G1146000 Malus domestica HOM05D007041 ORTHO05D008036 9.9e-23 110.5 126 53.2
Gohir.D08G147100 Gossypium hirsutum HOM05D007041 ORTHO05D008036 9.6e-18 94.0 122 47.5
Gorai.004G152600 Gossypium raimondii HOM05D007041 ORTHO05D008036 9.6e-18 94.0 122 47.5
CiPaw.02G039100 Carya illinoinensis HOM05D007041 ORTHO05D008036 1.6e-17 93.2 146 41.1
CANSAT56G1227 Cannabis sativa HOM05D007041 ORTHO05D008036 3.6e-17 92.0 128 46.1
CiPaw.01G073300 Carya illinoinensis HOM05D007041 ORTHO05D008036 3.6e-17 92.0 137 40.9
COL.COLO4_06320 Corchorus olitorius HOM05D007041 ORTHO05D008036 3.6e-17 92.0 123 46.3
TAR629G2489 Trochodendron aralioides HOM05D007041 ORTHO05D008036 4.0e-16 88.6 126 46.0
TAR636G2915 Trochodendron aralioides HOM05D007041 ORTHO05D008036 5.8e-15 84.7 119 46.2
Thecc.01G346300 Theobroma cacao HOM05D007041 ORTHO05D008036 1.7e-14 83.2 131 42.0
VMungo0331G1585 Vigna mungo HOM05D007041 ORTHO05D008036 8.4e-14 80.9 107 46.7
Glyma.07G057800 Glycine max HOM05D007041 ORTHO05D008036 2.4e-13 79.3 123 42.3
vmacro22517 Vaccinium macrocarpon HOM05D007041 ORTHO05D008036 2.4e-13 79.3 128 38.3
CSS0039531 Camellia sinensis var. sinensis HOM05D007041 ORTHO05D008036 3.2e-13 79.0 75 52.0
Rhsim01G0170500 Rhododendron simsii HOM05D007041 ORTHO05D008036 5.5e-13 78.2 127 38.6
QL02p031389 Quercus lobata HOM05D007041 ORTHO05D008036 7.1e-13 77.8 117 41.9
Rhsim07G0006100 Rhododendron simsii HOM05D000337 ORTHO05D000297 9.3e-13 77.4 128 41.4
Atru.chr5.628 Acer truncatum HOM05D007041 ORTHO05D008036 1.2e-12 77.0 119 42.0
Lj3g0003817 Lotus japonicus HOM05D007041 ORTHO05D008036 2.7e-12 75.9 111 44.1
TPR.G7661 Trifolium pratense HOM05D007041 ORTHO05D008036 2.7e-12 75.9 116 46.6
Manes.05G025400 Manihot esculenta HOM05D007041 ORTHO05D008036 4.6e-12 75.1 127 39.4
CSS0019600 Camellia sinensis var. sinensis HOM05D007041 ORTHO05D008036 7.9e-12 74.3 112 43.8
CSS0049473 Camellia sinensis var. sinensis HOM05D007041 ORTHO05D008036 7.9e-12 74.3 112 43.8
Lalb_Chr17g0342361 Lupinus albus HOM05D007041 ORTHO05D008036 7.9e-12 74.3 122 36.1
CsaV3_3G008250 Cucumis sativus L. HOM05D007041 ORTHO05D008036 1.0e-11 73.9 119 40.3
Cpa.g.sc2382.1 Carica papaya HOM05D007041 ORTHO05D008036 1.8e-11 73.2 59 59.3
Peaxi162Scf00843g00001 Petunia axillaris HOM05D007041 ORTHO05D008036 1.8e-11 73.2 134 38.1
Nn1g01816 Nelumbo nucifera HOM05D007041 ORTHO05D008036 3.9e-11 72.0 100 44.0
Phvul.010G111500 Phaseolus vulgaris HOM05D007041 ORTHO05D008036 3.9e-11 72.0 111 45.0
Gorai.001G156400 Gossypium raimondii HOM05D007041 ORTHO05D008036 5.1e-11 71.6 101 43.6
Gohir.A07G139300 Gossypium hirsutum HOM05D007041 ORTHO05D008036 6.7e-11 71.2 101 42.6
EL10Ac1g00306 Beta vulgaris HOM05D007041 ORTHO05D008036 8.7e-11 70.9 106 41.5
Medtr8g027905 Medicago truncatula HOM05D001941 ORTHO05D008036 8.7e-11 70.9 64 59.4
Thhalv10006386m.g Eutrema salsugineum HOM05D007041 ORTHO05D008036 1.5e-10 70.1 115 37.4
FAN06G4062 Fragaria x ananassa HOM05D007041 ORTHO05D008036 1.5e-10 70.1 42 76.2
Gohir.D07G144400 Gossypium hirsutum HOM05D007041 ORTHO05D008036 1.5e-10 70.1 101 42.6
Oeu007854.1 Olea europaea HOM05D007041 ORTHO05D008036 1.5e-10 70.1 119 38.7
Glyma.16G026800 Glycine max HOM05D007041 ORTHO05D008036 1.9e-10 69.7 120 40.8
vmacro22515 Vaccinium macrocarpon HOM05D007041 ORTHO05D008036 1.9e-10 69.7 118 39.0
Nitab4.5_0007594g0010 Nicotiana tabacum HOM05D007041 ORTHO05D008036 2.5e-10 69.3 131 39.7
Nn3g19073 Nelumbo nucifera HOM05D007041 ORTHO05D008036 5.6e-10 68.2 62 56.5
arahy.Tifrunner.gnm1.ann1.JU2T19 Arachis hypogaea HOM05D007041 ORTHO05D008036 9.6e-10 67.4 128 43.0
C08p36510 Brassica napus HOM05D007041 ORTHO05D008036 9.6e-10 67.4 106 38.7
BolC8t51234H Brassica oleracea HOM05D007041 ORTHO05D008036 9.6e-10 67.4 106 38.7
Medtr8g027305 Medicago truncatula HOM05D007041 ORTHO05D008036 9.6e-10 67.4 64 57.8
CiPaw.12G084900 Carya illinoinensis HOM05D007041 ORTHO05D008036 1.3e-09 67.0 57 54.4
Sabra14G0070100 Salix brachista HOM05D007041 ORTHO05D008036 1.3e-09 67.0 136 36.8
arahy.Tifrunner.gnm1.ann1.LKBY4F Arachis hypogaea HOM05D007041 ORTHO05D008036 1.6e-09 66.6 124 38.7
BraA09t40795Z Brassica rapa HOM05D007041 ORTHO05D008036 1.6e-09 66.6 106 37.7
Nn2g15118 Nelumbo nucifera HOM05D007041 ORTHO05D008036 2.1e-09 66.2 102 41.2
Nitab4.5_0000305g0050 Nicotiana tabacum HOM05D007041 ORTHO05D008036 2.1e-09 66.2 131 38.9
Sabra02G0143600 Salix brachista HOM05D007041 ORTHO05D008036 2.1e-09 66.2 69 52.2
A09p53730 Brassica napus HOM05D007041 ORTHO05D008036 2.8e-09 65.9 106 37.7
Sp5g01745 Schrenkiella parvula HOM05D007041 ORTHO05D008036 2.8e-09 65.9 91 39.6
Carub.0005s2835 Capsella rubella HOM05D007041 ORTHO05D008036 3.7e-09 65.5 103 37.9
CARHR171970 Cardamine hirsuta HOM05D007041 ORTHO05D008036 4.8e-09 65.1 98 38.8
Rhsim01G0170200 Rhododendron simsii HOM05D007041 ORTHO05D008036 4.8e-09 65.1 121 36.4
MELO3C006045.2 Cucumis melo HOM05D007041 ORTHO05D008036 6.2e-09 64.7 118 40.7
Actinidia28494 Actinidia chinensis HOM05D000017 ORTHO05D008036 8.2e-09 64.3 49 61.2
Prupe.5G115500 Prunus persica HOM05D007041 ORTHO05D008036 8.2e-09 64.3 120 38.3
vmacro22516 Vaccinium macrocarpon HOM05D007041 ORTHO05D008036 8.2e-09 64.3 121 36.4
Ca_09497_v3 Cicer arietinum L. HOM05D007041 ORTHO05D008036 1.1e-08 63.9 99 40.4
Manes.01G248300 Manihot esculenta HOM05D007041 ORTHO05D008036 1.1e-08 63.9 107 40.2
Medtr8g027915 Medicago truncatula HOM05D007041 ORTHO05D008036 1.1e-08 63.9 55 54.5
Potri.002G168300 Populus trichocarpa HOM05D007041 ORTHO05D008036 1.4e-08 63.5 68 52.9
Potri.001G094000 Populus trichocarpa HOM05D007041 ORTHO05D008036 1.8e-08 63.2 91 41.8
Manes.02G012400 Manihot esculenta HOM05D007041 ORTHO05D008036 2.4e-08 62.8 123 35.8
Oeu009948.1 Olea europaea HOM05D007041 ORTHO05D008036 2.4e-08 62.8 123 35.0
AUR62023489 Chenopodium quinoa HOM05D007041 ORTHO05D008036 3.1e-08 62.4 40 75.0
AT3G61660 Arabidopsis thaliana HOM05D007041 ORTHO05D008036 4.0e-08 62.0 108 36.1
Sed0010994 Sechium edule HOM05D007041 ORTHO05D008036 5.3e-08 61.6 119 38.7
Sc01g0010130 Simmondsia chinensis HOM05D007041 ORTHO05D008036 5.3e-08 61.6 124 43.5
Potri.014G095600 Populus trichocarpa HOM05D007041 ORTHO05D008036 6.9e-08 61.2 113 37.2
AL5G44060 Arabidopsis lyrata HOM05D007041 ORTHO05D008036 1.2e-07 60.5 97 39.2
Rhsim07G0083800 Rhododendron simsii HOM05D007041 ORTHO05D008036 1.2e-07 60.5 44 61.4
SalBow3G2736 Salvia bowleyana HOM05D007041 ORTHO05D008036 1.2e-07 60.5 47 57.4
ECA236G3839 Erigeron canadensis HOM05D007041 ORTHO05D008036 1.5e-07 60.1 100 40.0
Manes.02G012350 Manihot esculenta HOM05D007041 ORTHO05D008036 2.6e-07 59.3 123 35.0
Haze_08658 Corylus avellana HOM05D007041 ORTHO05D008036 3.4e-07 58.9 76 43.4
RcHm_v2.0_Chr7g0195411 Rosa chinensis HOM05D017100 ORTHO05D008036 3.4e-07 58.9 44 59.1
Thecc.03G293400 Theobroma cacao HOM05D007041 ORTHO05D008036 3.4e-07 58.9 45 53.3
Migut.B01841 Erythranthe guttata HOM05D007041 ORTHO05D008036 4.5e-07 58.5 41 56.1
Sabra01G0069900 Salix brachista HOM05D007041 ORTHO05D008036 5.8e-07 58.2 114 36.0
PGSC0003DMG400000096 Solanum tuberosum HOM05D007041 ORTHO05D008036 5.8e-07 58.2 76 40.8
Glyma.19G254100 Glycine max HOM05D007041 ORTHO05D008036 7.6e-07 57.8 108 39.8
Potri.003G137600 Populus trichocarpa HOM05D007041 ORTHO05D008036 7.6e-07 57.8 101 38.6
Oeu007855.1 Olea europaea HOM05D007041 ORTHO05D008036 1.0e-06 57.4 100 34.0
Thhalv10001747m.g Eutrema salsugineum HOM05D010682 ORTHO05D012785 1.3e-06 57.0 69 49.3
Lsat_1_v5_gn_7_2180 Lactuca sativa HOM05D007041 ORTHO05D008036 1.3e-06 57.0 52 51.9
TPR.G7659 Trifolium pratense HOM05D007041 ORTHO05D008036 1.3e-06 57.0 63 52.4
HPP92_007621 Vanilla planifolia HOM05D007041 ORTHO05D008036 1.3e-06 57.0 56 50.0
Gohir.A12G234950 Gossypium hirsutum HOM05D007041 ORTHO05D008036 2.2e-06 56.2 29 75.9
Gohir.D12G236050 Gossypium hirsutum HOM05D007041 ORTHO05D008036 2.2e-06 56.2 29 75.9
Gorai.008G252800 Gossypium raimondii HOM05D007041 ORTHO05D008036 2.2e-06 56.2 29 75.9
SGA_v2.0_scaffold11G05722 Striga asiatica HOM05D007041 ORTHO05D008036 2.9e-06 55.8 52 48.1
Medtr7g117120 Medicago truncatula HOM05D007041 ORTHO05D008036 3.8e-06 55.5 108 32.4
FvH4_5g04090 Fragaria vesca HOM05D017100 ORTHO05D008036 4.9e-06 55.1 29 79.3
FAN13G1599 Fragaria x ananassa HOM05D017100 ORTHO05D008036 4.9e-06 55.1 29 79.3
FAN18G0435 Fragaria x ananassa HOM05D017100 ORTHO05D008036 4.9e-06 55.1 29 79.3
FAN18G2618 Fragaria x ananassa HOM05D017100 ORTHO05D008036 4.9e-06 55.1 29 79.3
A03p25600 Brassica napus HOM05D010682 ORTHO05D012785 6.5e-06 54.7 47 53.2
FAN08G3467 Fragaria x ananassa HOM05D017100 ORTHO05D008036 8.4e-06 54.3 29 79.3


User provided reference genes

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