Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0358831 Rosa chinensis HOM05D000192 ORTHO05D000123 3.0e-38 161.4 84 100.0
RcHm_v2.0_Chr6g0279941 Rosa chinensis HOM05D000192 ORTHO05D000123 2.9e-28 128.3 81 85.2
Prupe.8G175400 Prunus persica HOM05D000192 ORTHO05D000123 1.3e-20 102.8 83 67.5
MD05G1131200 Malus domestica HOM05D000192 ORTHO05D000123 1.2e-15 86.3 83 62.7
CiPaw.05G015700 Carya illinoinensis HOM05D000192 ORTHO05D000123 3.4e-13 78.2 83 51.8
CiPaw.11G060200 Carya illinoinensis HOM05D000192 ORTHO05D000123 4.9e-12 74.3 83 53.0
MD12G1141200 Malus domestica HOM05D000192 ORTHO05D000123 6.4e-12 73.9 80 60.0
CiPaw.05G090300 Carya illinoinensis HOM05D000192 ORTHO05D000123 5.4e-11 70.9 82 52.4
CiPaw.11G060300 Carya illinoinensis HOM05D000192 ORTHO05D000123 1.2e-10 69.7 83 49.4
Haze_02034 Corylus avellana HOM05D000192 ORTHO05D000123 2.1e-10 68.9 83 50.6
Haze_02036 Corylus avellana HOM05D000192 ORTHO05D000123 2.7e-10 68.6 83 50.6
Haze_02035 Corylus avellana HOM05D000192 ORTHO05D000123 4.6e-10 67.8 83 50.6
QL02p095095 Quercus lobata HOM05D000192 ORTHO05D000123 1.0e-09 66.6 82 48.8
Cfa005340 Carpinus fangiana HOM05D000192 ORTHO05D000123 1.3e-09 66.2 83 48.2
QL03p016713 Quercus lobata HOM05D000192 ORTHO05D000123 1.3e-09 66.2 82 48.8
QL93p0107_0395 Quercus lobata HOM05D000192 ORTHO05D000123 1.3e-09 66.2 80 50.0
QL04p083957 Quercus lobata HOM05D000192 ORTHO05D000123 1.7e-09 65.9 82 47.6
Cfa019396 Carpinus fangiana HOM05D000192 ORTHO05D000123 2.3e-09 65.5 82 51.2
QL04p083945 Quercus lobata HOM05D000192 ORTHO05D000123 3.9e-09 64.7 82 48.8
Haze_07791 Corylus avellana HOM05D000192 ORTHO05D000123 5.1e-09 64.3 83 53.0
QL02p095082 Quercus lobata HOM05D000192 ORTHO05D000123 5.1e-09 64.3 82 48.8
QL04p083941 Quercus lobata HOM05D000192 ORTHO05D000123 6.6e-09 63.9 82 48.8
QL02p095033 Quercus lobata HOM05D000192 ORTHO05D000123 8.7e-09 63.5 83 48.2
QL03p016690 Quercus lobata HOM05D000192 ORTHO05D000123 1.1e-08 63.2 83 48.2
QL02p095044 Quercus lobata HOM05D000192 ORTHO05D000123 1.5e-08 62.8 83 47.0
QL02p095005 Quercus lobata HOM05D000192 ORTHO05D000123 2.5e-08 62.0 83 45.8
Cfa005339 Carpinus fangiana HOM05D000192 ORTHO05D000123 3.3e-08 61.6 83 47.0
QL02p095054 Quercus lobata HOM05D000192 ORTHO05D000123 4.3e-08 61.2 82 46.3
QL02p095087 Quercus lobata HOM05D000192 ORTHO05D000123 4.3e-08 61.2 82 46.3
QL03p016719 Quercus lobata HOM05D000192 ORTHO05D000123 5.6e-08 60.8 82 47.6
QL04p083914 Quercus lobata HOM05D000192 ORTHO05D000123 5.6e-08 60.8 82 47.6
QL02p094986 Quercus lobata HOM05D000192 ORTHO05D000123 1.2e-07 59.7 81 45.7
RcHm_v2.0_Chr6g0279931 Rosa chinensis HOM05D000192 ORTHO05D000123 2.1e-07 58.9 87 46.0
Sed0011310 Sechium edule HOM05D000192 ORTHO05D000123 2.1e-07 58.9 82 47.6
Sed0018405 Sechium edule HOM05D000192 ORTHO05D000123 2.1e-07 58.9 82 47.6
Thecc.02G048100 Theobroma cacao HOM05D000192 ORTHO05D000123 2.1e-07 58.9 89 44.9
QL04p083948 Quercus lobata HOM05D000192 ORTHO05D000123 2.8e-07 58.5 82 45.1
Sed0015878 Sechium edule HOM05D000192 ORTHO05D000123 3.6e-07 58.2 82 46.3
Sed0018950 Sechium edule HOM05D000192 ORTHO05D000123 3.6e-07 58.2 82 45.1
MELO3C013284.2 Cucumis melo HOM05D000192 ORTHO05D000123 4.7e-07 57.8 82 48.8
CsaV3_7G001700 Cucumis sativus L. HOM05D000192 ORTHO05D000123 4.7e-07 57.8 82 42.7
FvH4_2g16240 Fragaria vesca HOM05D000192 ORTHO05D000123 4.7e-07 57.8 89 43.8
FAN24G2278 Fragaria x ananassa HOM05D000192 ORTHO05D000123 4.7e-07 57.8 89 43.8
FAN24G3441 Fragaria x ananassa HOM05D000192 ORTHO05D000123 4.7e-07 57.8 89 43.8
Prupe.8G175500 Prunus persica HOM05D000192 ORTHO05D000123 4.7e-07 57.8 83 45.8
Sed0015241 Sechium edule HOM05D000192 ORTHO05D000123 4.7e-07 57.8 82 47.6
FAN20G2682 Fragaria x ananassa HOM05D000192 ORTHO05D000123 6.2e-07 57.4 89 43.8
Sed0011396 Sechium edule HOM05D000192 ORTHO05D000123 6.2e-07 57.4 82 47.6
Haze_07793 Corylus avellana HOM05D000192 ORTHO05D000123 8.1e-07 57.0 83 43.4
MELO3C013269.2 Cucumis melo HOM05D000192 ORTHO05D000123 8.1e-07 57.0 82 42.7
CANSAT25G0845 Cannabis sativa HOM05D000192 ORTHO05D000123 1.1e-06 56.6 82 41.5
MD10G1134000 Malus domestica HOM05D000192 ORTHO05D000123 1.1e-06 56.6 89 44.9
CsaV3_7G001600 Cucumis sativus L. HOM05D000192 ORTHO05D000123 1.4e-06 56.2 82 47.6
Gohir.D01G164300 Gossypium hirsutum HOM05D000192 ORTHO05D000123 1.4e-06 56.2 86 43.0
Gohir.D01G164600 Gossypium hirsutum HOM05D000192 ORTHO05D000123 1.4e-06 56.2 86 43.0
Gohir.D01G164800 Gossypium hirsutum HOM05D000192 ORTHO05D000123 1.4e-06 56.2 86 43.0
MD05G1130800 Malus domestica HOM05D000192 ORTHO05D000123 1.4e-06 56.2 89 44.9
Prupe.8G175600 Prunus persica HOM05D000192 ORTHO05D000123 1.4e-06 56.2 79 49.4
Gorai.002G204200 Gossypium raimondii HOM05D000192 ORTHO05D000123 1.8e-06 55.8 86 43.0
Sed0027956 Sechium edule HOM05D000192 ORTHO05D000123 1.8e-06 55.8 80 47.5
FAN15G0002 Fragaria x ananassa HOM05D000192 ORTHO05D000123 2.4e-06 55.5 89 42.7
FAN27G1935 Fragaria x ananassa HOM05D000192 ORTHO05D000123 2.4e-06 55.5 89 42.7
Prupe.8G175700 Prunus persica HOM05D000192 ORTHO05D000123 2.4e-06 55.5 86 47.7
QL02p095049 Quercus lobata HOM05D000192 ORTHO05D000123 2.4e-06 55.5 68 48.5
QL04p083834 Quercus lobata HOM05D000192 ORTHO05D000123 2.4e-06 55.5 82 43.9
Ca_15358_v3 Cicer arietinum L. HOM05D000192 ORTHO05D000123 3.1e-06 55.1 90 36.7
CsaV3_7G001720 Cucumis sativus L. HOM05D000192 ORTHO05D000123 3.1e-06 55.1 82 42.7
Sed0026298 Sechium edule HOM05D000192 ORTHO05D000123 3.1e-06 55.1 82 43.9
CANSAT25G2486 Cannabis sativa HOM05D000192 ORTHO05D000123 4.0e-06 54.7 83 41.0
COL.COLO4_27787 Corchorus olitorius HOM05D000192 ORTHO05D000123 4.0e-06 54.7 82 43.9
Glyma.04G011800 Glycine max HOM05D000192 ORTHO05D000123 4.0e-06 54.7 91 38.5
Sed0012440 Sechium edule HOM05D000192 ORTHO05D000123 4.0e-06 54.7 82 41.5
Thecc.02G048700 Theobroma cacao HOM05D000192 ORTHO05D000123 4.0e-06 54.7 87 41.4
MELO3C028713.2 Cucumis melo HOM05D000192 ORTHO05D000123 5.2e-06 54.3 82 41.5
Potri.009G142500 Populus trichocarpa HOM05D000192 ORTHO05D000123 5.2e-06 54.3 81 44.4
CANSAT25G3643 Cannabis sativa HOM05D000192 ORTHO05D000123 6.9e-06 53.9 85 37.6
Ca_20896_v3 Cicer arietinum L. HOM05D000192 ORTHO05D000123 6.9e-06 53.9 91 42.9
MELO3C013274.2 Cucumis melo HOM05D000192 ORTHO05D000123 6.9e-06 53.9 71 46.5
Lj3g0006809 Lotus japonicus HOM05D000192 ORTHO05D000123 6.9e-06 53.9 83 36.1
Glyma.04G011400 Glycine max HOM05D000192 ORTHO05D000123 9.0e-06 53.5 91 37.4
Potri.004G182400 Populus trichocarpa HOM05D000192 ORTHO05D000123 9.0e-06 53.5 90 43.3
Prupe.8G176000 Prunus persica HOM05D000192 ORTHO05D000123 9.0e-06 53.5 90 45.6
Thecc.02G048400 Theobroma cacao HOM05D000192 ORTHO05D000123 9.0e-06 53.5 78 43.6


User provided reference genes

Program Settings