Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0358781 Rosa chinensis HOM05D001384 ORTHO05D001215 8.6e-25 116.7 84 100.0
FAN01G1051 Fragaria x ananassa HOM05D001384 ORTHO05D001215 6.8e-22 107.1 84 86.9
FAN03G0436 Fragaria x ananassa HOM05D001384 ORTHO05D001215 3.7e-20 101.3 84 89.3
FAN10G3769 Fragaria x ananassa HOM05D001384 ORTHO05D001215 3.2e-19 98.2 86 88.4
FAN10G1694 Fragaria x ananassa HOM05D001384 ORTHO05D001215 2.1e-18 95.5 84 88.1
FAN06G2635 Fragaria x ananassa HOM05D001384 ORTHO05D001215 3.5e-18 94.7 84 88.1
FAN06G3780 Fragaria x ananassa HOM05D001384 ORTHO05D001215 3.5e-18 94.7 84 86.9
MD07G1144900 Malus domestica HOM05D001384 ORTHO05D001215 2.6e-13 78.6 97 66.0
Prupe.2G183500 Prunus persica HOM05D001384 ORTHO05D001215 1.3e-12 76.3 92 58.7
TAR375G0324 Trochodendron aralioides HOM05D001384 ORTHO05D001215 4.9e-12 74.3 38 97.4
Hma1.2p1_0384F.1_g141070 Hydrangea macrophylla HOM05D001384 ORTHO05D001215 1.4e-11 72.8 38 92.1
TAR636G2986 Trochodendron aralioides HOM05D001384 ORTHO05D001215 1.4e-11 72.8 77 64.9
Duzib138G1328 Durio zibethinus HOM05D001384 ORTHO05D001215 1.9e-11 72.4 38 94.7
Thecc.01G347500 Theobroma cacao HOM05D001384 ORTHO05D001215 1.9e-11 72.4 38 94.7
Actinidia02805 Actinidia chinensis HOM05D001384 ORTHO05D001215 2.4e-11 72.0 36 97.2
ClCG05G001090 Citrullus lanatus HOM05D001384 ORTHO05D001215 2.4e-11 72.0 35 100.0
Gohir.A11G094700 Gossypium hirsutum HOM05D001384 ORTHO05D001215 2.4e-11 72.0 38 94.7
Gohir.D11G099700 Gossypium hirsutum HOM05D001384 ORTHO05D001215 2.4e-11 72.0 38 94.7
Gorai.007G105900 Gossypium raimondii HOM05D001384 ORTHO05D001215 2.4e-11 72.0 38 94.7
MD01G1076000 Malus domestica HOM05D001384 ORTHO05D001215 2.4e-11 72.0 97 69.1
Manes.05G026100 Manihot esculenta HOM05D001384 ORTHO05D001215 2.4e-11 72.0 38 92.1
Sed0001168 Sechium edule HOM05D001384 ORTHO05D001215 2.4e-11 72.0 35 100.0
Gohir.A10G068700 Gossypium hirsutum HOM05D001384 ORTHO05D001215 3.2e-11 71.6 38 92.1
Actinidia28493 Actinidia chinensis HOM05D001384 ORTHO05D001215 4.1e-11 71.2 36 97.2
CsaV3_3G008420 Cucumis sativus L. HOM05D001384 ORTHO05D001215 4.1e-11 71.2 37 91.9
GSVIVG01027049001 Vitis vinifera HOM05D001384 ORTHO05D001215 4.1e-11 71.2 38 92.1
Gohir.A12G110700 Gossypium hirsutum HOM05D001384 ORTHO05D001215 5.4e-11 70.9 38 92.1
Gohir.D12G114000 Gossypium hirsutum HOM05D001384 ORTHO05D001215 5.4e-11 70.9 38 92.1
Gorai.008G123500 Gossypium raimondii HOM05D001384 ORTHO05D001215 5.4e-11 70.9 38 92.1
PGSC0003DMG400000207 Solanum tuberosum HOM05D001384 ORTHO05D001215 5.4e-11 70.9 38 89.5
COL.COLO4_06332 Corchorus olitorius HOM05D001384 ORTHO05D001215 7.1e-11 70.5 36 97.2
Duzib133G0751 Durio zibethinus HOM05D001384 ORTHO05D001215 7.1e-11 70.5 77 59.7
Gohir.A10G199650 Gossypium hirsutum HOM05D001384 ORTHO05D001215 7.1e-11 70.5 38 92.1
Sabra02G0144100 Salix brachista HOM05D001384 ORTHO05D001215 7.1e-11 70.5 38 89.5
Cpa.g.sc194.9 Carica papaya HOM05D001384 ORTHO05D001215 9.2e-11 70.1 36 97.2
Nitab4.5_0000305g0110 Nicotiana tabacum HOM05D001384 ORTHO05D001215 9.2e-11 70.1 38 89.5
Actinidia20196 Actinidia chinensis HOM05D001384 ORTHO05D001215 1.2e-10 69.7 36 94.4
Haze_15620 Corylus avellana HOM05D001384 ORTHO05D001215 1.2e-10 69.7 38 92.1
Gohir.A07G139600 Gossypium hirsutum HOM05D001384 ORTHO05D001215 1.2e-10 69.7 38 89.5
Gohir.D07G144700 Gossypium hirsutum HOM05D001384 ORTHO05D001215 1.2e-10 69.7 38 89.5
Gorai.001G156700 Gossypium raimondii HOM05D001384 ORTHO05D001215 1.2e-10 69.7 38 89.5
vmacro22519 Vaccinium macrocarpon HOM05D001384 ORTHO05D001215 1.2e-10 69.7 36 94.4
Solyc01g095515.1 Solanum lycopersicum HOM05D001384 ORTHO05D001215 2.7e-10 68.6 38 86.8
Sopen01g039270 Solanum pennellii HOM05D001384 ORTHO05D001215 2.7e-10 68.6 38 86.8
TWI59G0487 Tripterygium wilfordii HOM05D001384 ORTHO05D001215 2.7e-10 68.6 36 91.7
Nitab4.5_0009232g0020 Nicotiana tabacum HOM05D001384 ORTHO05D001215 3.5e-10 68.2 38 86.8
Potri.014G094800 Populus trichocarpa HOM05D001384 ORTHO05D001215 3.5e-10 68.2 84 58.3
Dinv43894 Davidia involucrata HOM05D001384 ORTHO05D001215 4.6e-10 67.8 36 94.4
Solyc10g011730.3 Solanum lycopersicum HOM05D001384 ORTHO05D001215 4.6e-10 67.8 38 84.2
Sopen10g005520 Solanum pennellii HOM05D001384 ORTHO05D001215 4.6e-10 67.8 38 84.2
THA.LOC104817336 Tarenaya hassleriana HOM05D001384 ORTHO05D001215 4.6e-10 67.8 38 84.2
Aa31LG10G15620 Aethionema arabicum HOM05D001384 ORTHO05D001215 6.0e-10 67.4 39 89.7
Nitab4.5_0000522g0080 Nicotiana tabacum HOM05D001384 ORTHO05D001215 6.0e-10 67.4 36 88.9
QL04p058637 Quercus lobata HOM05D001384 ORTHO05D001215 6.0e-10 67.4 36 88.9
Rhsim01G0169300 Rhododendron simsii HOM05D001384 ORTHO05D001215 6.0e-10 67.4 36 94.4
Gohir.A11G210500 Gossypium hirsutum HOM05D001384 ORTHO05D001215 7.8e-10 67.0 38 89.5
CSS0003232 Camellia sinensis var. sinensis HOM05D001384 ORTHO05D001215 1.0e-09 66.6 39 89.7
CAN.G986.43 Capsicum annuum HOM05D001384 ORTHO05D001215 1.0e-09 66.6 38 86.8
CiPaw.01G072100 Carya illinoinensis HOM05D001384 ORTHO05D001215 1.0e-09 66.6 85 54.1
Nitab4.5_0008261g0010 Nicotiana tabacum HOM05D001384 ORTHO05D001215 1.0e-09 66.6 36 86.1
Rhsim07G0006800 Rhododendron simsii HOM05D001384 ORTHO05D001215 1.3e-09 66.2 36 91.7
Sed0020989 Sechium edule HOM05D001384 ORTHO05D001215 1.3e-09 66.2 36 91.7
Dinv32554 Davidia involucrata HOM05D001384 ORTHO05D001215 1.7e-09 65.9 79 55.7
Peaxi162Scf01012g00121 Petunia axillaris HOM05D001384 ORTHO05D001215 1.7e-09 65.9 38 81.6
AL4G45630 Arabidopsis lyrata HOM05D001384 ORTHO05D001215 2.3e-09 65.5 39 87.2
AT2G46330 Arabidopsis thaliana HOM05D001384 ORTHO05D001215 2.3e-09 65.5 39 87.2
BcaB01g03229 Brassica carinata HOM05D001384 ORTHO05D001215 2.3e-09 65.5 39 87.2
A03p25570 Brassica napus HOM05D001384 ORTHO05D001215 2.3e-09 65.5 39 87.2
BraA03t11773Z Brassica rapa HOM05D001384 ORTHO05D001215 2.3e-09 65.5 39 87.2
Carub.0004s2903 Capsella rubella HOM05D001384 ORTHO05D001215 2.3e-09 65.5 39 87.2
Thhalv10001752m.g Eutrema salsugineum HOM05D001384 ORTHO05D001215 2.3e-09 65.5 39 87.2
Lalb_Chr04g0261751 Lupinus albus HOM05D001384 ORTHO05D001215 2.3e-09 65.5 36 88.9
PGSC0003DMG400019380 Solanum tuberosum HOM05D001384 ORTHO05D001215 2.3e-09 65.5 36 83.3
Sp4g28370 Schrenkiella parvula HOM05D001384 ORTHO05D001215 3.0e-09 65.1 39 87.2
Atru.chr5.621 Acer truncatum HOM05D001384 ORTHO05D001215 3.9e-09 64.7 78 55.1
AT3G61640 Arabidopsis thaliana HOM05D001384 ORTHO05D001215 3.9e-09 64.7 40 85.0
C03p30500 Brassica napus HOM05D001384 ORTHO05D001215 5.1e-09 64.3 39 84.6
CDE02G0411 Ceratophyllum demersum HOM05D001384 ORTHO05D001215 5.1e-09 64.3 38 81.6
MELO3C006062.2 Cucumis melo HOM05D001384 ORTHO05D001215 5.1e-09 64.3 35 91.4
THA.LOC104802055 Tarenaya hassleriana HOM05D001384 ORTHO05D001215 5.1e-09 64.3 38 84.2
Zm00001eb359480 Zea mays HOM05D001384 ORTHO05D001215 5.1e-09 64.3 33 93.9
Aa31LG1G27700 Aethionema arabicum HOM05D001384 ORTHO05D001215 6.6e-09 63.9 39 84.6
BcaB01g03227 Brassica carinata HOM05D001384 ORTHO05D001215 6.6e-09 63.9 39 84.6
BcaC01g05077 Brassica carinata HOM05D001384 ORTHO05D001215 6.6e-09 63.9 39 84.6
Ciclev10023364m.g Citrus clementina HOM05D001384 ORTHO05D001215 6.6e-09 63.9 39 84.6
QL04p059433 Quercus lobata HOM05D001384 ORTHO05D001215 6.6e-09 63.9 85 58.8
arahy.Tifrunner.gnm1.ann1.1BHK1H Arachis hypogaea HOM05D001384 ORTHO05D001215 8.7e-09 63.5 35 88.6
arahy.Tifrunner.gnm1.ann1.246EX0 Arachis hypogaea HOM05D001384 ORTHO05D001215 8.7e-09 63.5 35 85.7
arahy.Tifrunner.gnm1.ann1.57RBBI Arachis hypogaea HOM05D001384 ORTHO05D001215 8.7e-09 63.5 35 85.7
Manes.01G249100 Manihot esculenta HOM05D001384 ORTHO05D001215 8.7e-09 63.5 38 89.5
Sp5g01770 Schrenkiella parvula HOM05D001384 ORTHO05D001215 8.7e-09 63.5 34 88.2
HPP92_026774 Vanilla planifolia HOM05D001384 ORTHO05D001215 8.7e-09 63.5 39 84.6
arahy.Tifrunner.gnm1.ann1.JZQU6N Arachis hypogaea HOM05D001384 ORTHO05D001215 1.1e-08 63.2 35 88.6
arahy.Tifrunner.gnm1.ann1.XBFI6K Arachis hypogaea HOM05D001384 ORTHO05D001215 1.1e-08 63.2 35 88.6
Peaxi162Scf00099g01816 Petunia axillaris HOM05D001384 ORTHO05D001215 1.1e-08 63.2 36 83.3
PGR031G3192 Punica granatum HOM05D001384 ORTHO05D001215 1.1e-08 63.2 36 88.9
A04p00990 Brassica napus HOM05D001384 ORTHO05D001215 1.5e-08 62.8 34 85.3
C04p31180 Brassica napus HOM05D001384 ORTHO05D001215 1.5e-08 62.8 34 85.3
BolC4t24669H Brassica oleracea HOM05D001384 ORTHO05D001215 1.5e-08 62.8 34 85.3
BraA04t15816Z Brassica rapa HOM05D001384 ORTHO05D001215 1.5e-08 62.8 34 85.3
MBI07_g20448_MAGBIO Magnolia biondii HOM05D001384 ORTHO05D001215 1.5e-08 62.8 36 86.1
Os05g0217000 Oryza sativa ssp. japonica HOM05D001384 ORTHO05D001215 1.5e-08 62.8 39 82.1
BcaB01g03224 Brassica carinata HOM05D001384 ORTHO05D001215 1.9e-08 62.4 39 84.6
BcaC02g12698 Brassica carinata HOM05D001384 ORTHO05D001215 1.9e-08 62.4 39 84.6
BcaC02g12816 Brassica carinata HOM05D001384 ORTHO05D001215 1.9e-08 62.4 39 84.6
A05p01460 Brassica napus HOM05D001384 ORTHO05D001215 1.9e-08 62.4 39 84.6
C04p01650 Brassica napus HOM05D001384 ORTHO05D001215 1.9e-08 62.4 39 84.6
BolC4t21817H Brassica oleracea HOM05D001384 ORTHO05D001215 1.9e-08 62.4 39 84.6
BraA05t19143Z Brassica rapa HOM05D001384 ORTHO05D001215 1.9e-08 62.4 39 84.6
CARHR141610 Cardamine hirsuta HOM05D001384 ORTHO05D001215 1.9e-08 62.4 39 84.6
CDE09G1367 Ceratophyllum demersum HOM05D001384 ORTHO05D001215 1.9e-08 62.4 36 83.3
BcaB02g08150 Brassica carinata HOM05D001384 ORTHO05D001215 2.5e-08 62.0 36 83.3
Aqoxy5G04117 Aquilegia oxysepala HOM05D001384 ORTHO05D001215 3.3e-08 61.6 37 89.2
BcaC01g05082 Brassica carinata HOM05D001384 ORTHO05D001215 3.3e-08 61.6 83 53.0
HanXRQChr04g0121001 Helianthus annuus HOM05D001384 ORTHO05D001215 3.3e-08 61.6 38 76.3
Carub.0005s2833 Capsella rubella HOM05D001384 ORTHO05D001215 4.3e-08 61.2 33 87.9
Zm00001eb350580 Zea mays HOM05D001384 ORTHO05D001215 5.6e-08 60.8 39 79.5
BcaC02g10241 Brassica carinata HOM05D001384 ORTHO05D001215 7.3e-08 60.5 34 82.4
CSS0021424 Camellia sinensis var. sinensis HOM05D001384 ORTHO05D001215 7.3e-08 60.5 36 86.1
Glyma.03G255700 Glycine max HOM05D001384 ORTHO05D001215 7.3e-08 60.5 77 49.4
SMO143G0078 Selaginella moellendorffii HOM05D001384 ORTHO05D001215 7.3e-08 60.5 35 82.9
CANSAT56G0949 Cannabis sativa HOM05D001384 ORTHO05D001215 9.6e-08 60.1 34 88.2
CDE08G0321 Ceratophyllum demersum HOM05D001384 ORTHO05D001215 9.6e-08 60.1 37 86.5
Os02g0264800 Oryza sativa ssp. japonica HOM05D001384 ORTHO05D001215 9.6e-08 60.1 37 86.5
Zm00001eb237880 Zea mays HOM05D001384 ORTHO05D001215 9.6e-08 60.1 37 86.5
Os06g0505700 Oryza sativa ssp. japonica HOM05D001384 ORTHO05D001215 1.2e-07 59.7 37 86.5
AL5G44040 Arabidopsis lyrata HOM05D001384 ORTHO05D001215 1.6e-07 59.3 32 87.5
CDE02G4026 Ceratophyllum demersum HOM05D001384 ORTHO05D001215 2.1e-07 58.9 37 83.8
DCAR_006964 Daucus carota HOM05D001384 ORTHO05D001215 2.1e-07 58.9 80 48.8
PGR042G2194 Punica granatum HOM05D001384 ORTHO05D001215 2.1e-07 58.9 33 87.9
unitig_62.g23800 Utricularia gibba HOM05D001384 ORTHO05D001215 2.1e-07 58.9 37 75.7
FvH4_7g15910 Fragaria vesca HOM05D001384 ORTHO05D001215 2.8e-07 58.5 68 82.4
Zm00001eb203920 Zea mays HOM05D001384 ORTHO05D001215 2.8e-07 58.5 37 83.8
vmacro13148 Vaccinium macrocarpon HOM05D001384 ORTHO05D001215 6.2e-07 57.4 84 46.4
MBI06_g32761_MAGBIO Magnolia biondii HOM05D001384 ORTHO05D001215 1.1e-06 56.6 37 81.1
Os01g0657000 Oryza sativa ssp. japonica HOM05D001384 ORTHO05D001215 1.1e-06 56.6 85 49.4
SEGI_03889 Sequoiadendron giganteum HOM05D001384 ORTHO05D001215 1.1e-06 56.6 85 49.4
SEGI_03997 Sequoiadendron giganteum HOM05D001384 ORTHO05D001215 1.1e-06 56.6 85 49.4
QL02p057492 Quercus lobata HOM05D001384 ORTHO05D001215 1.4e-06 56.2 32 87.5
Lj1g0002747 Lotus japonicus HOM05D001384 ORTHO05D001215 1.8e-06 55.8 34 79.4
Potri.001G094700 Populus trichocarpa HOM05D001384 ORTHO05D001215 1.8e-06 55.8 32 87.5
AagrBONN_evm.TU.Sc2ySwM_117.409 Anthoceros agrestis HOM05D001384 ORTHO05D001215 4.0e-06 54.7 35 71.4
CsaV3_5G002200 Cucumis sativus L. HOM05D001384 ORTHO05D001215 4.0e-06 54.7 30 86.7
ECA236G1259 Erigeron canadensis HOM05D001384 ORTHO05D001215 4.0e-06 54.7 71 50.7
Duzib068G0580 Durio zibethinus HOM05D001384 ORTHO05D001215 5.2e-06 54.3 30 90.0
Duzib084G1120 Durio zibethinus HOM05D001384 ORTHO05D001215 5.2e-06 54.3 30 90.0
Duzib205G1079 Durio zibethinus HOM05D001384 ORTHO05D001215 5.2e-06 54.3 30 90.0
Gohir.A12G234600 Gossypium hirsutum HOM05D001384 ORTHO05D001215 5.2e-06 54.3 30 90.0
Gorai.008G252400 Gossypium raimondii HOM05D001384 ORTHO05D001215 5.2e-06 54.3 30 90.0
Thecc.03G292300 Theobroma cacao HOM05D001384 ORTHO05D001215 5.2e-06 54.3 30 90.0
CDE03G0448 Ceratophyllum demersum HOM05D001384 ORTHO05D001215 6.9e-06 53.9 32 81.2
QL02p031550 Quercus lobata HOM05D001384 ORTHO05D001215 6.9e-06 53.9 32 84.4
TWI15G0052 Tripterygium wilfordii HOM05D001384 ORTHO05D001215 6.9e-06 53.9 30 86.7
unitig_736.g22817 Utricularia gibba HOM05D001384 ORTHO05D001215 6.9e-06 53.9 37 70.3
Lsat_1_v5_gn_7_1901 Lactuca sativa HOM05D001384 ORTHO05D001215 9.0e-06 53.5 31 80.6
Phvul.006G110400 Phaseolus vulgaris HOM05D001384 ORTHO05D001215 9.0e-06 53.5 29 89.7
Potri.003G136600 Populus trichocarpa HOM05D001384 ORTHO05D001215 9.0e-06 53.5 32 81.2


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