Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0358651 Rosa chinensis HOM05D005178 ORTHO05D006123 6.8e-134 480.7 250 100.0
FAN03G0560 Fragaria x ananassa HOM05D005178 ORTHO05D006123 4.9e-108 394.8 249 81.1
FAN10G2759 Fragaria x ananassa HOM05D005178 ORTHO05D006123 4.9e-108 394.8 249 80.3
FvH4_7g15840 Fragaria vesca HOM05D005178 ORTHO05D006123 1.4e-107 393.3 249 79.9
FAN06G0749 Fragaria x ananassa HOM05D005178 ORTHO05D006123 4.1e-107 391.7 249 79.5
FAN06G4203 Fragaria x ananassa HOM05D005178 ORTHO05D006123 2.0e-106 389.4 248 79.8
FAN10G1950 Fragaria x ananassa HOM05D005178 ORTHO05D006123 5.0e-105 384.8 248 79.0
MD07G1144100 Malus domestica HOM05D005178 ORTHO05D006123 2.8e-63 246.1 250 56.4
MD01G1075000 Malus domestica HOM05D005178 ORTHO05D006123 2.8e-55 219.5 250 54.0
Prupe.2G183000 Prunus persica HOM05D005178 ORTHO05D006123 2.4e-54 216.5 250 52.4
Haze_15614 Corylus avellana HOM05D005178 ORTHO05D006123 4.8e-47 192.2 245 50.2
CANSAT56G4005 Cannabis sativa HOM05D005178 ORTHO05D006123 6.3e-47 191.8 246 47.6
Gohir.D12G113800 Gossypium hirsutum HOM05D005178 ORTHO05D006123 3.8e-44 182.6 249 43.4
Gorai.008G123300 Gossypium raimondii HOM05D005178 ORTHO05D006123 1.6e-42 177.2 249 42.6
Nn7g37376 Nelumbo nucifera HOM05D005178 ORTHO05D006123 1.6e-42 177.2 245 42.9
CiPaw.01G071600 Carya illinoinensis HOM05D005178 ORTHO05D006123 2.7e-42 176.4 246 47.2
QL04p059571 Quercus lobata HOM05D005178 ORTHO05D006123 3.6e-42 176.0 253 45.5
Gorai.007G105400 Gossypium raimondii HOM05D005178 ORTHO05D006123 1.8e-41 173.7 250 44.8
Manes.05G026400 Manihot esculenta HOM05D005178 ORTHO05D006123 1.8e-41 173.7 243 41.6
Gohir.D11G099200 Gossypium hirsutum HOM05D005178 ORTHO05D006123 5.1e-41 172.2 250 44.8
Gohir.A11G094200 Gossypium hirsutum HOM05D005178 ORTHO05D006123 2.6e-40 169.9 250 44.8
Thecc.01G348100 Theobroma cacao HOM05D005178 ORTHO05D006123 4.4e-40 169.1 246 45.5
Nn1g01788 Nelumbo nucifera HOM05D005178 ORTHO05D006123 9.7e-40 167.9 241 39.8
Sabra02G0144400 Salix brachista HOM05D005178 ORTHO05D006123 2.2e-39 166.8 245 41.6
Potri.002G167300 Populus trichocarpa HOM05D005178 ORTHO05D006123 1.8e-38 163.7 244 41.0
Duzib133G0451 Durio zibethinus HOM05D005178 ORTHO05D006123 2.4e-38 163.3 245 43.7
PGR042G2135 Punica granatum HOM05D005178 ORTHO05D006123 2.6e-37 159.8 252 41.7
Hma1.2p1_2972F.1_g331100 Hydrangea macrophylla HOM05D005178 ORTHO05D006123 5.9e-37 158.7 245 40.8
Hma1.2p1_0384F.1_g141000 Hydrangea macrophylla HOM05D005178 ORTHO05D006123 1.7e-36 157.1 245 43.7
Dinv32550 Davidia involucrata HOM05D005178 ORTHO05D006123 2.9e-36 156.4 242 42.6
Duzib138G0021 Durio zibethinus HOM05D005178 ORTHO05D006123 5.0e-36 155.6 246 43.1
Gohir.D08G147400 Gossypium hirsutum HOM05D005178 ORTHO05D006123 5.0e-36 155.6 244 39.3
Gohir.A08G126100 Gossypium hirsutum HOM05D005178 ORTHO05D006123 6.5e-36 155.2 239 41.0
Gorai.004G153000 Gossypium raimondii HOM05D005178 ORTHO05D006123 8.5e-36 154.8 244 38.9
CsaV3_3G008390 Cucumis sativus L. HOM05D000050 ORTHO05D000380 3.2e-35 152.9 249 39.4
ClCG08G003840 Citrullus lanatus HOM05D005178 ORTHO05D006123 4.7e-34 149.1 248 41.1
Potri.014G094400 Populus trichocarpa HOM05D005178 ORTHO05D006123 6.1e-34 148.7 244 40.2
C03p38880 Brassica napus HOM05D005178 ORTHO05D006123 1.8e-33 147.1 248 42.3
MBI06_g02230_MAGBIO Magnolia biondii HOM05D005178 ORTHO05D006123 1.8e-33 147.1 251 40.6
CiPaw.02G038200 Carya illinoinensis HOM05D005178 ORTHO05D006123 3.9e-33 146.0 249 41.4
MELO3C006056.2 Cucumis melo HOM05D005178 ORTHO05D006123 6.7e-33 145.2 249 39.4
A10p00520 Brassica napus HOM05D005178 ORTHO05D006123 1.1e-32 144.4 258 42.6
C05p00550 Brassica napus HOM05D005178 ORTHO05D006123 1.5e-32 144.1 258 42.2
BolC3t16162H Brassica oleracea HOM05D005178 ORTHO05D006123 2.0e-32 143.7 248 42.7
BcaB03g13583 Brassica carinata HOM05D005178 ORTHO05D006123 2.6e-32 143.3 258 42.2
Dinv43890 Davidia involucrata HOM05D005178 ORTHO05D006123 4.4e-32 142.5 242 39.7
C03p30470 Brassica napus HOM05D005178 ORTHO05D006123 5.7e-32 142.1 251 38.6
BolC3t15395H Brassica oleracea HOM05D005178 ORTHO05D006123 5.7e-32 142.1 251 38.6
BolC5t28844H Brassica oleracea HOM05D005178 ORTHO05D006123 5.7e-32 142.1 258 42.2
BcaC01g05079 Brassica carinata HOM05D005178 ORTHO05D006123 9.7e-32 141.4 253 41.1
Sc01g0002990 Simmondsia chinensis HOM05D005178 ORTHO05D006123 9.7e-32 141.4 247 42.1
Lj1g0025938 Lotus japonicus HOM05D005178 ORTHO05D006123 2.2e-31 140.2 253 39.1
AL4G45600 Arabidopsis lyrata HOM05D005178 ORTHO05D006123 2.8e-31 139.8 248 35.1
A03p31890 Brassica napus HOM05D005178 ORTHO05D006123 2.8e-31 139.8 248 42.7
Rhsim07G0007300 Rhododendron simsii HOM05D005178 ORTHO05D006123 2.8e-31 139.8 247 43.3
A05p01500 Brassica napus HOM05D005178 ORTHO05D006123 3.7e-31 139.4 257 38.5
BraA05t19146Z Brassica rapa HOM05D005178 ORTHO05D006123 3.7e-31 139.4 257 38.5
BraA10t42331Z Brassica rapa HOM05D005178 ORTHO05D006123 3.7e-31 139.4 258 42.2
SGA_v2.0_scaffold11G05717 Striga asiatica HOM05D005178 ORTHO05D006123 3.7e-31 139.4 236 40.3
BcaC01g06846 Brassica carinata HOM05D005178 ORTHO05D006123 6.3e-31 138.7 248 42.3
Sed0019896 Sechium edule HOM05D005178 ORTHO05D006123 1.4e-30 137.5 252 40.1
BcaB01g02336 Brassica carinata HOM05D005178 ORTHO05D006123 1.8e-30 137.1 248 41.5
Atru.chr5.616 Acer truncatum HOM05D005178 ORTHO05D006123 2.4e-30 136.7 242 38.4
Carub.0001s0080 Capsella rubella HOM05D005178 ORTHO05D006123 2.4e-30 136.7 257 40.1
C04p01700 Brassica napus HOM05D005178 ORTHO05D006123 3.1e-30 136.3 256 38.3
BolC4t21822H Brassica oleracea HOM05D005178 ORTHO05D006123 3.1e-30 136.3 256 38.3
AL1G10980 Arabidopsis lyrata HOM05D005178 ORTHO05D006123 4.1e-30 136.0 253 37.5
BcaC02g12521 Brassica carinata HOM05D005178 ORTHO05D006123 4.1e-30 136.0 255 38.0
Sopen10g005540 Solanum pennellii HOM05D005178 ORTHO05D006123 9.1e-30 134.8 251 38.6
BolC2t09843H Brassica oleracea HOM05D005178 ORTHO05D006123 1.2e-29 134.4 252 42.5
Aa31LG1G27670 Aethionema arabicum HOM05D005178 ORTHO05D006123 2.0e-29 133.7 243 33.7
AT1G01453 Arabidopsis thaliana HOM05D005178 ORTHO05D006123 2.0e-29 133.7 252 39.3
BcaC03g16062 Brassica carinata HOM05D005178 ORTHO05D006123 2.0e-29 133.7 252 42.1
C02p38280 Brassica napus HOM05D005178 ORTHO05D006123 2.0e-29 133.7 253 41.9
Solyc10g011750.3 Solanum lycopersicum HOM05D005178 ORTHO05D006123 2.6e-29 133.3 251 38.6
Aa31LG5G850 Aethionema arabicum HOM05D005178 ORTHO05D006123 3.5e-29 132.9 251 34.7
Ciclev10021837m.g Citrus clementina HOM05D005178 ORTHO05D006123 4.5e-29 132.5 257 40.9
BraA02t07418Z Brassica rapa HOM05D005178 ORTHO05D006123 5.9e-29 132.1 253 41.9
Phvul.006G110000 Phaseolus vulgaris HOM05D005178 ORTHO05D006123 5.9e-29 132.1 259 37.8
VMungo0540G0638 Vigna mungo HOM05D005178 ORTHO05D006123 5.9e-29 132.1 261 38.7
PSO135G0875 Papaver somniferum HOM05D005178 ORTHO05D006123 7.7e-29 131.7 241 36.1
Medtr7g116930 Medicago truncatula HOM05D005178 ORTHO05D006123 1.0e-28 131.3 254 39.4
AL6G52250 Arabidopsis lyrata HOM05D005178 ORTHO05D006123 1.3e-28 131.0 258 40.7
AT2G46300 Arabidopsis thaliana HOM05D005178 ORTHO05D006123 2.9e-28 129.8 248 33.9
Carub.0006s3617 Capsella rubella HOM05D005178 ORTHO05D006123 2.9e-28 129.8 263 40.3
PSO384G3117 Papaver somniferum HOM05D005178 ORTHO05D006123 5.0e-28 129.0 241 36.9
Thhalv10028895m.g Eutrema salsugineum HOM05D005178 ORTHO05D006123 8.5e-28 128.3 259 39.0
Sp6g01000 Schrenkiella parvula HOM05D005178 ORTHO05D006123 8.5e-28 128.3 258 41.5
CARHR000970 Cardamine hirsuta HOM05D005178 ORTHO05D006123 1.9e-27 127.1 253 35.6
Lj7A504T56 Lonicera japonica HOM05D005178 ORTHO05D006123 1.9e-27 127.1 237 38.4
Sed0006216 Sechium edule HOM05D005178 ORTHO05D006123 1.9e-27 127.1 253 32.8
Sed0008780 Sechium edule HOM05D005178 ORTHO05D006123 2.5e-27 126.7 241 37.8
Peaxi162Scf00403g00074 Petunia axillaris HOM05D005178 ORTHO05D006123 3.2e-27 126.3 239 37.7
CARHR249180 Cardamine hirsuta HOM05D005178 ORTHO05D006123 5.5e-27 125.6 258 38.4
Ca_09491_v3 Cicer arietinum L. HOM05D005178 ORTHO05D006123 5.5e-27 125.6 252 39.3
BcaB01g03231 Brassica carinata HOM05D005178 ORTHO05D006123 1.2e-26 124.4 250 38.0
BcaC01g05085 Brassica carinata HOM05D005178 ORTHO05D006123 1.2e-26 124.4 250 38.0
CsaV3_6G003970 Cucumis sativus L. HOM05D005178 ORTHO05D006123 1.2e-26 124.4 250 38.0
Thhalv10009686m.g Eutrema salsugineum HOM05D005178 ORTHO05D006123 1.2e-26 124.4 256 39.8
AT4G01110 Arabidopsis thaliana HOM05D005178 ORTHO05D006123 1.6e-26 124.0 260 39.6
PGSC0003DMG400019400 Solanum tuberosum HOM05D005178 ORTHO05D006123 1.6e-26 124.0 251 37.8
BraA03t12361Z Brassica rapa HOM05D005178 ORTHO05D006123 2.1e-26 123.6 247 39.7
THA.LOC104825868 Tarenaya hassleriana HOM05D005178 ORTHO05D006123 2.1e-26 123.6 256 38.7
HPP92_005223 Vanilla planifolia HOM05D005178 ORTHO05D006123 2.1e-26 123.6 245 32.2
Sp1g00860 Schrenkiella parvula HOM05D005178 ORTHO05D006123 3.6e-26 122.9 249 39.8
MELO3C029922.2 Cucumis melo HOM05D005178 ORTHO05D006123 1.0e-25 121.3 252 36.9
TWI14G0215 Tripterygium wilfordii HOM05D005178 ORTHO05D006123 1.4e-25 120.9 245 33.9
THA.LOC104802056 Tarenaya hassleriana HOM05D005178 ORTHO05D006123 4.0e-25 119.4 245 37.6
CAN.G1651.2 Capsicum annuum HOM05D005178 ORTHO05D006123 6.7e-25 118.6 246 36.6
HPP92_026775 Vanilla planifolia HOM05D005178 ORTHO05D006123 8.8e-25 118.2 248 37.5
Thhalv10001596m.g Eutrema salsugineum HOM05D005178 ORTHO05D006123 1.2e-24 117.9 252 31.0
A03p25540 Brassica napus HOM05D005178 ORTHO05D006123 2.0e-24 117.1 251 37.1
BraA03t11771Z Brassica rapa HOM05D005178 ORTHO05D006123 2.0e-24 117.1 251 37.1
Aqoxy7G00174 Aquilegia oxysepala HOM05D005178 ORTHO05D006123 1.3e-23 114.4 256 36.3
Nitab4.5_0005619g0010 Nicotiana tabacum HOM05D005178 ORTHO05D006123 1.7e-23 114.0 247 33.2
Aa31LG1G10830 Aethionema arabicum HOM05D005178 ORTHO05D006123 2.2e-23 113.6 247 35.6
CSS0038689 Camellia sinensis var. sinensis HOM05D005178 ORTHO05D006123 4.8e-23 112.5 244 38.9
Glyma.03G255300 Glycine max HOM05D005178 ORTHO05D006123 4.8e-23 112.5 244 36.9
Glyma.19G252900 Glycine max HOM05D005178 ORTHO05D006123 5.3e-22 109.0 245 36.7
Nitab4.5_0003779g0030 Nicotiana tabacum HOM05D005178 ORTHO05D006123 1.2e-21 107.8 236 36.0
THA.LOC104817334 Tarenaya hassleriana HOM05D005178 ORTHO05D006123 1.2e-21 107.8 244 34.0
Carub.0004s2900 Capsella rubella HOM05D005178 ORTHO05D006123 2.7e-21 106.7 247 29.6
Gohir.A12G110633 Gossypium hirsutum HOM05D005178 ORTHO05D006123 2.7e-21 106.7 145 43.4
A02p24280 Brassica napus HOM05D005178 ORTHO05D006123 5.9e-21 105.5 175 38.3
CARHR141580 Cardamine hirsuta HOM05D005178 ORTHO05D006123 5.9e-21 105.5 249 29.7
Lalb_Chr04g0261721 Lupinus albus HOM05D005178 ORTHO05D006123 5.9e-21 105.5 178 33.7
Sp4g28340 Schrenkiella parvula HOM05D005178 ORTHO05D006123 7.7e-21 105.1 252 33.3
Nitab4.5_0002262g0140 Nicotiana tabacum HOM05D005178 ORTHO05D006123 1.0e-20 104.8 241 36.5
Actinidia10100 Actinidia chinensis HOM05D005178 ORTHO05D006123 2.2e-20 103.6 247 36.4
Oeu008679.1 Olea europaea HOM05D005178 ORTHO05D006123 2.9e-20 103.2 168 33.3
Sabra14G0069000 Salix brachista HOM05D005178 ORTHO05D006123 5.0e-20 102.4 163 34.4
TPR.G4707 Trifolium pratense HOM05D005178 ORTHO05D006123 6.5e-20 102.1 244 35.2
SHI13195 Sapria himalayana HOM05D005178 ORTHO05D006123 1.5e-19 100.9 238 28.6
Peaxi162Scf00099g00191 Petunia axillaris HOM05D005178 ORTHO05D006123 7.2e-19 98.6 244 35.2
vmacro13200 Vaccinium macrocarpon HOM05D005178 ORTHO05D006123 2.3e-17 93.6 198 45.5
FAN01G2778 Fragaria x ananassa HOM05D005178 ORTHO05D006123 2.0e-16 90.5 52 76.9
TAR375G0073 Trochodendron aralioides HOM05D005178 ORTHO05D006123 5.7e-16 89.0 111 41.4
Nitab4.5_0000522g0010 Nicotiana tabacum HOM05D005178 ORTHO05D006123 6.3e-15 85.5 216 31.9
SalBow5G4166 Salvia bowleyana HOM05D005178 ORTHO05D006123 1.5e-11 74.3 250 28.4
Psat3g003480 Pisum sativum HOM05D005178 ORTHO05D006123 9.5e-11 71.6 131 29.8
BcaC01g05083 Brassica carinata HOM05D005178 ORTHO05D006123 1.6e-10 70.9 99 34.3
ATR1127G036 Amborella trichopoda HOM05D005178 ORTHO05D006123 1.0e-09 68.2 242 26.9
AUR62023503 Chenopodium quinoa HOM05D005178 ORTHO05D006123 2.6e-08 63.5 100 32.0
Cpa.g.sc104.46 Carica papaya HOM05D002687 ORTHO05D002052 4.4e-08 62.8 155 29.7
Mapoly0067s0044 Marchantia polymorpha HOM05D000973 ORTHO05D000652 4.4e-08 62.8 192 24.5
Os01g0574800 Oryza sativa ssp. japonica HOM05D002137 ORTHO05D002144 9.8e-08 61.6 156 27.6
AUR62004447 Chenopodium quinoa HOM05D005178 ORTHO05D006123 2.8e-07 60.1 100 30.0
SEGI_30112 Sequoiadendron giganteum HOM05D000973 ORTHO05D000652 2.4e-06 57.0 208 28.4
Dinv30376 Davidia involucrata HOM05D002137 ORTHO05D002144 3.1e-06 56.6 190 24.2
Dinv37912 Davidia involucrata HOM05D002137 ORTHO05D002144 3.1e-06 56.6 176 25.6
Sabra15G0156800 Salix brachista HOM05D000973 ORTHO05D000652 5.4e-06 55.8 129 32.6
Potri.015G148200 Populus trichocarpa HOM05D000973 ORTHO05D000652 9.2e-06 55.1 144 31.9
Sc09g0009850 Simmondsia chinensis HOM05D002137 ORTHO05D002144 9.2e-06 55.1 243 31.3
Sc23g0005630 Simmondsia chinensis HOM05D002137 ORTHO05D002144 9.2e-06 55.1 202 31.2


User provided reference genes

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