Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0358181 Rosa chinensis HOM05D005133 ORTHO05D006685 1.2e-215 753.1 418 100.0
FAN06G1776 Fragaria x ananassa HOM05D005133 ORTHO05D006685 2.2e-177 625.9 432 83.3
FAN10G2939 Fragaria x ananassa HOM05D005133 ORTHO05D006685 1.4e-176 623.2 381 87.4
FvH4_7g15540 Fragaria vesca HOM05D005133 ORTHO05D006685 2.4e-176 622.5 439 82.0
FAN10G2725 Fragaria x ananassa HOM05D005133 ORTHO05D006685 2.4e-176 622.5 381 87.4
Prupe.2G179100 Prunus persica HOM05D005133 ORTHO05D006685 8.5e-174 614.0 419 79.5
FAN06G1340 Fragaria x ananassa HOM05D005133 ORTHO05D006685 2.1e-172 609.4 449 79.5
MD07G1130200 Malus domestica HOM05D005133 ORTHO05D006685 8.6e-166 587.4 418 78.0
RcHm_v2.0_Chr1g0357891 Rosa chinensis HOM05D005133 ORTHO05D006685 4.7e-164 581.6 371 91.4
Thecc.01G351000 Theobroma cacao HOM05D005133 ORTHO05D006685 5.1e-142 508.4 418 67.2
Gohir.D07G145800 Gossypium hirsutum HOM05D005133 ORTHO05D006685 1.1e-141 507.3 418 67.0
Gorai.001G158000 Gossypium raimondii HOM05D005133 ORTHO05D006685 1.1e-141 507.3 418 67.0
Duzib133G0222 Durio zibethinus HOM05D005133 ORTHO05D006685 2.2e-137 493.0 417 65.2
Atru.chr5.593 Acer truncatum HOM05D005133 ORTHO05D006685 2.1e-135 486.5 426 63.8
GSVIVG01027010001 Vitis vinifera HOM05D005133 ORTHO05D006685 4.6e-135 485.3 425 64.2
Cfa007878 Carpinus fangiana HOM05D005133 ORTHO05D006685 7.8e-135 484.6 424 63.9
CiPaw.02G036200 Carya illinoinensis HOM05D005133 ORTHO05D006685 1.3e-134 483.8 424 64.2
Dinv43872 Davidia involucrata HOM05D005133 ORTHO05D006685 5.1e-134 481.9 424 62.7
Haze_14198 Corylus avellana HOM05D005133 ORTHO05D006685 1.6e-132 476.9 424 63.0
Lj7C506T5 Lonicera japonica HOM05D005133 ORTHO05D006685 3.1e-131 472.6 415 64.1
Potri.014G091400 Populus trichocarpa HOM05D005133 ORTHO05D006685 6.9e-131 471.5 426 63.6
Cpa.g.sc11.53 Carica papaya HOM05D005133 ORTHO05D006685 2.0e-130 469.9 416 64.4
Ciclev10020434m.g Citrus clementina HOM05D005133 ORTHO05D006685 3.4e-130 469.2 424 63.0
Dinv32531 Davidia involucrata HOM05D005133 ORTHO05D006685 3.8e-129 465.7 424 61.1
Peaxi162Scf00020g01713 Petunia axillaris HOM05D005133 ORTHO05D006685 8.4e-129 464.5 419 62.3
RcHm_v2.0_Chr1g0358091 Rosa chinensis HOM05D005133 ORTHO05D006685 8.4e-129 464.5 294 85.7
ClCG05G014200 Citrullus lanatus HOM05D005133 ORTHO05D006685 3.2e-128 462.6 384 64.8
TAR375G0148 Trochodendron aralioides HOM05D005133 ORTHO05D006685 1.6e-127 460.3 424 60.4
CSS0009332 Camellia sinensis var. sinensis HOM05D005133 ORTHO05D006685 3.5e-127 459.1 423 61.7
Actinidia20170 Actinidia chinensis HOM05D005133 ORTHO05D006685 4.6e-127 458.8 425 60.5
Manes.01G251600 Manihot esculenta HOM05D005133 ORTHO05D006685 4.6e-127 458.8 424 62.3
COL.COLO4_06373 Corchorus olitorius HOM05D005133 ORTHO05D006685 2.5e-125 453.0 330 72.7
QL07p038619 Quercus lobata HOM05D005133 ORTHO05D006685 7.3e-125 451.4 423 60.8
Nitab4.5_0003501g0010 Nicotiana tabacum HOM05D005133 ORTHO05D006685 9.6e-125 451.1 386 63.2
Rhsim07G0009300 Rhododendron simsii HOM05D005133 ORTHO05D006685 1.3e-124 450.7 418 59.1
TPR.G34211 Trifolium pratense HOM05D005133 ORTHO05D006685 3.1e-123 446.0 425 57.9
MSTRG.20869 Avicennia marina HOM05D005133 ORTHO05D006685 4.0e-123 445.7 385 63.1
CsaV3_3G008530 Cucumis sativus L. HOM05D005133 ORTHO05D006685 5.3e-123 445.3 382 64.1
Sed0023612 Sechium edule HOM05D005133 ORTHO05D006685 5.3e-123 445.3 384 63.3
Cc06_g17440 Coffea canephora HOM05D005133 ORTHO05D006685 9.0e-123 444.5 424 58.0
LjContig00310g0005517 Lotus japonicus HOM05D005133 ORTHO05D006685 2.0e-122 443.4 425 59.5
Migut.H02011 Erythranthe guttata HOM05D005133 ORTHO05D006685 1.3e-121 440.7 420 59.3
arahy.Tifrunner.gnm1.ann1.YZ0HQS Arachis hypogaea HOM05D005133 ORTHO05D006685 1.7e-121 440.3 428 59.1
MELO3C006074.2 Cucumis melo HOM05D005133 ORTHO05D006685 2.2e-121 439.9 401 61.8
arahy.Tifrunner.gnm1.ann1.ZNWN3Y Arachis hypogaea HOM05D005133 ORTHO05D006685 8.4e-121 438.0 428 58.9
DCAR_025229 Daucus carota HOM05D005133 ORTHO05D006685 1.1e-120 437.6 383 61.9
CSS0000155 Camellia sinensis var. sinensis HOM05D005133 ORTHO05D006685 1.4e-120 437.2 412 60.9
Migut.B01807 Erythranthe guttata HOM05D005133 ORTHO05D006685 2.4e-120 436.4 420 58.8
PGR031G0061 Punica granatum HOM05D005133 ORTHO05D006685 2.4e-120 436.4 384 61.7
CSS0040148 Camellia sinensis var. sinensis HOM05D005133 ORTHO05D006685 3.2e-120 436.0 386 61.9
HanXRQChr17g0562291 Helianthus annuus HOM05D005133 ORTHO05D006685 3.2e-120 436.0 424 58.3
Solyc01g095230.4 Solanum lycopersicum HOM05D005133 ORTHO05D006685 7.1e-120 434.9 425 59.1
VMungo1127G1104 Vigna mungo HOM05D005133 ORTHO05D006685 7.1e-120 434.9 426 57.7
arahy.Tifrunner.gnm1.ann1.JRPH7J Arachis hypogaea HOM05D005133 ORTHO05D006685 1.2e-119 434.1 426 58.0
Nn7g37315 Nelumbo nucifera HOM05D005133 ORTHO05D006685 1.2e-119 434.1 387 59.9
Psat7g208960 Pisum sativum HOM05D005133 ORTHO05D006685 1.0e-118 431.0 385 60.3
Sopen01g039020 Solanum pennellii HOM05D005133 ORTHO05D006685 1.0e-118 431.0 421 59.6
Aqoxy3G00498 Aquilegia oxysepala HOM05D005133 ORTHO05D006685 3.0e-118 429.5 387 60.7
SalBow3G2243 Salvia bowleyana HOM05D005133 ORTHO05D006685 5.1e-118 428.7 407 59.2
PSO135G0656 Papaver somniferum HOM05D005133 ORTHO05D006685 6.7e-118 428.3 426 57.0
TWI34G1432 Tripterygium wilfordii HOM05D005133 ORTHO05D006685 6.7e-118 428.3 427 58.8
Migut.B01808 Erythranthe guttata HOM05D005133 ORTHO05D006685 8.7e-118 427.9 420 58.1
Ca_20805_v3 Cicer arietinum L. HOM05D005133 ORTHO05D006685 1.5e-117 427.2 424 56.8
Haze_15576 Corylus avellana HOM05D005133 ORTHO05D006685 1.9e-117 426.8 424 57.8
Sabra14G0066300 Salix brachista HOM05D005133 ORTHO05D006685 1.9e-117 426.8 471 56.1
PGSC0003DMG401000198 Solanum tuberosum HOM05D005133 ORTHO05D006685 1.9e-117 426.8 387 62.0
Cfa003860 Carpinus fangiana HOM05D005133 ORTHO05D006685 3.7e-116 422.5 354 66.1
Phvul.011G052300 Phaseolus vulgaris HOM05D005133 ORTHO05D006685 4.8e-116 422.2 426 57.0
Medtr4g068010 Medicago truncatula HOM05D005133 ORTHO05D006685 6.9e-115 418.3 422 55.5
Lalb_Chr19g0138411 Lupinus albus HOM05D005133 ORTHO05D006685 1.2e-114 417.5 383 60.3
SGA_v2.0_scaffold95G28800 Striga asiatica HOM05D003721 ORTHO05D004303 1.5e-114 417.2 384 58.9
CANSAT01G0674 Cannabis sativa HOM05D005133 ORTHO05D006685 6.4e-113 411.8 393 62.1
Gohir.A07G140500 Gossypium hirsutum HOM05D005133 ORTHO05D006685 6.4e-113 411.8 383 62.9
EL10Ac1g00344 Beta vulgaris HOM05D005133 ORTHO05D006685 7.1e-112 408.3 423 55.8
SalBow1G3823 Salvia bowleyana HOM05D005133 ORTHO05D006685 9.3e-112 407.9 361 62.3
Haze_15581 Corylus avellana HOM05D005133 ORTHO05D006685 7.9e-111 404.8 422 56.4
Glyma.12G050200 Glycine max HOM05D005133 ORTHO05D006685 1.0e-110 404.4 358 63.1
Sc01g0003150 Simmondsia chinensis HOM05D005133 ORTHO05D006685 1.3e-110 404.1 432 56.5
Hund27238 Selenicereus undatus HOM05D005133 ORTHO05D006685 3.0e-110 402.9 431 56.8
Oeu015214.1 Olea europaea HOM05D005133 ORTHO05D006685 3.9e-110 402.5 482 50.4
unitig_0.g335 Utricularia gibba HOM05D005133 ORTHO05D006685 1.9e-109 400.2 382 58.4
Nitab4.5_0000915g0010 Nicotiana tabacum HOM05D005133 ORTHO05D006685 5.6e-109 398.7 359 61.3
ECA234G4221 Erigeron canadensis HOM05D005133 ORTHO05D006685 4.2e-104 382.5 423 53.7
ATR0626G352 Amborella trichopoda HOM05D005133 ORTHO05D006685 3.9e-102 375.9 399 54.9
AUR62022626 Chenopodium quinoa HOM05D005133 ORTHO05D006685 3.9e-102 375.9 410 56.1
Lsat_1_v5_gn_4_34900 Lactuca sativa HOM05D005133 ORTHO05D006685 9.7e-101 371.3 421 51.8
vmacro20884 Vaccinium macrocarpon HOM05D005133 ORTHO05D006685 1.6e-100 370.5 401 53.9
Aa31LG1G27580 Aethionema arabicum HOM05D005133 ORTHO05D006685 3.7e-100 369.4 418 52.9
Eucgr.J01063 Eucalyptus grandis HOM05D005133 ORTHO05D006685 4.8e-100 369.0 425 52.0
CAN.G78.137 Capsicum annuum HOM05D005133 ORTHO05D006685 6.3e-100 368.6 386 54.1
RcHm_v2.0_Chr1g0358051 Rosa chinensis HOM05D005133 ORTHO05D006685 1.7e-97 360.5 364 62.6
AUR62004420 Chenopodium quinoa HOM05D005133 ORTHO05D006685 2.9e-97 359.8 403 55.6
THA.LOC104817324 Tarenaya hassleriana HOM05D005133 ORTHO05D006685 3.8e-97 359.4 418 51.7
Os01g0226500 Oryza sativa ssp. japonica HOM05D005133 ORTHO05D006685 3.2e-96 356.3 395 52.4
AL4G45460 Arabidopsis lyrata HOM05D005133 ORTHO05D006685 1.2e-95 354.4 419 51.1
Sp5g32810 Schrenkiella parvula HOM05D005133 ORTHO05D006685 2.7e-95 353.2 417 50.8
Zm00001eb339090 Zea mays HOM05D005133 ORTHO05D006685 6.1e-95 352.1 437 51.9
BcaC02g12500 Brassica carinata HOM05D005133 ORTHO05D006685 1.0e-94 351.3 423 50.8
BcaC02g12707 Brassica carinata HOM05D005133 ORTHO05D006685 6.7e-94 348.6 417 51.1
A05p01630 Brassica napus HOM05D005133 ORTHO05D006685 1.1e-93 347.8 425 50.8
C04p01840 Brassica napus HOM05D005133 ORTHO05D006685 1.1e-93 347.8 424 50.7
BraA05t19159Z Brassica rapa HOM05D005133 ORTHO05D006685 1.3e-92 344.4 425 50.1
vmacro13220 Vaccinium macrocarpon HOM05D005133 ORTHO05D006685 6.5e-89 332.0 327 59.0
Thhalv10028732m.g Eutrema salsugineum HOM05D005133 ORTHO05D006685 1.9e-88 330.5 414 49.0
Carub.0004s2888 Capsella rubella HOM05D005133 ORTHO05D006685 2.5e-88 330.1 416 48.1
Thhalv10001493m.g Eutrema salsugineum HOM05D005133 ORTHO05D006685 4.2e-88 329.3 417 48.2
MBI16_g41624_MAGBIO Magnolia biondii HOM05D005133 ORTHO05D006685 9.7e-85 318.2 419 48.0
CARHR141470 Cardamine hirsuta HOM05D005133 ORTHO05D006685 4.5e-82 309.3 440 47.0
AT2G46200 Arabidopsis thaliana HOM05D005133 ORTHO05D006685 4.7e-79 299.3 379 49.6
vmacro22850 Vaccinium macrocarpon HOM05D005133 ORTHO05D006685 3.3e-69 266.5 351 47.6
Ah.05g180080 Amaranthus hybridus HOM05D005133 ORTHO05D006685 9.7e-69 265.0 419 43.9
HPP92_023966 Vanilla planifolia HOM05D005133 ORTHO05D006685 4.8e-68 262.7 328 50.9
Pp3c4_26280 Physcomitrium patens HOM05D005133 ORTHO05D006685 1.8e-67 260.8 312 48.7
CDE09G0708 Ceratophyllum demersum HOM05D005133 ORTHO05D006685 1.2e-61 241.5 331 48.0
PSO478G1127 Papaver somniferum HOM05D005133 ORTHO05D006685 7.5e-61 238.8 267 55.1
Mapoly0001s0322 Marchantia polymorpha HOM05D005133 ORTHO05D006685 1.1e-59 235.0 416 39.9
PSO384G2230 Papaver somniferum HOM05D005133 ORTHO05D006685 1.6e-58 231.1 257 53.7
arahy.Tifrunner.gnm1.ann1.Z00T6Z Arachis hypogaea HOM05D005133 ORTHO05D006685 2.4e-51 207.2 240 52.5
AagrBONN_evm.TU.Sc2ySwM_344.4499 Anthoceros agrestis HOM05D005133 ORTHO05D006685 6.4e-44 182.6 400 36.2
FAN03G0151 Fragaria x ananassa HOM05D005133 ORTHO05D006685 1.3e-41 174.9 83 96.4
RcHm_v2.0_Chr1g0358101 Rosa chinensis HOM05D004139 ORTHO05D004873 7.3e-40 169.1 116 95.7
Zm00001eb201120 Zea mays HOM05D005133 ORTHO05D006685 6.6e-33 146.0 143 56.6
Zm00001eb407270 Zea mays HOM05D005133 ORTHO05D006685 6.6e-33 146.0 143 56.6
Gohir.A03G093200 Gossypium hirsutum HOM05D005133 ORTHO05D006685 5.8e-29 132.9 175 51.4
SMO239G0112 Selaginella moellendorffii HOM05D005133 ORTHO05D006685 2.2e-28 131.0 353 32.9
SHI13349 Sapria himalayana HOM05D005133 ORTHO05D006685 5.4e-27 126.3 141 53.2
CBR_g45167 Chara braunii HOM05D005133 ORTHO05D006685 9.2e-27 125.6 292 32.5
FvH4_2g33570 Fragaria vesca HOM05D000073 ORTHO05D015767 9.5e-24 115.5 88 72.7
Glyma.11G125567 Glycine max HOM05D005133 ORTHO05D006685 2.6e-21 107.5 144 44.4
vmacro01745 Vaccinium macrocarpon HOM05D005133 ORTHO05D006685 5.8e-21 106.3 144 47.2
HanXRQChr04g0107751 Helianthus annuus HOM05D005133 ORTHO05D006685 1.4e-19 101.7 96 64.6
Rhsim01G0168000 Rhododendron simsii HOM05D005133 ORTHO05D006685 3.2e-19 100.5 71 77.5
AUR62025074 Chenopodium quinoa HOM05D005133 ORTHO05D006685 8.1e-15 85.9 65 70.8
SMO117G0103 Selaginella moellendorffii HOM05D005133 ORTHO05D006685 2.0e-13 81.3 183 37.2
SMO114G0022 Selaginella moellendorffii HOM05D005133 ORTHO05D006685 1.1e-11 75.5 93 47.3
C04p01870 Brassica napus HOM05D005133 ORTHO05D006685 2.4e-11 74.3 39 71.8
Rhsim01G0167900 Rhododendron simsii HOM05D000030 ORTHO05D000009 1.3e-07 62.0 42 76.2


User provided reference genes

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