Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0358151 Rosa chinensis HOM05D004139 ORTHO05D004873 1.3e-31 139.0 67 100.0
RcHm_v2.0_Chr1g0358071 Rosa chinensis HOM05D004139 ORTHO05D004873 3.9e-28 127.5 66 92.4
RcHm_v2.0_Chr1g0357901 Rosa chinensis HOM05D004139 ORTHO05D004873 1.1e-27 125.9 65 92.3
RcHm_v2.0_Chr1g0357601 Rosa chinensis HOM05D004139 ORTHO05D004873 4.0e-25 117.5 62 88.7
TWI59G0388 Tripterygium wilfordii HOM05D004139 ORTHO05D004873 6.9e-25 116.7 65 80.0
Cfa003879 Carpinus fangiana HOM05D004139 ORTHO05D004873 3.4e-24 114.4 65 81.5
Sabra02G0147300 Salix brachista HOM05D004139 ORTHO05D004873 3.4e-24 114.4 66 75.8
TAR629G2568 Trochodendron aralioides HOM05D004139 ORTHO05D004873 3.4e-24 114.4 65 80.0
Prupe.2G176300 Prunus persica HOM05D004139 ORTHO05D004873 4.5e-24 114.0 65 83.1
FvH4_7g15180 Fragaria vesca HOM05D004139 ORTHO05D004873 5.8e-24 113.6 62 90.3
FAN01G2783 Fragaria x ananassa HOM05D004139 ORTHO05D004873 5.8e-24 113.6 62 90.3
FAN06G0792 Fragaria x ananassa HOM05D004139 ORTHO05D004873 5.8e-24 113.6 62 90.3
Dinv43858 Davidia involucrata HOM05D004139 ORTHO05D004873 7.6e-24 113.2 65 80.0
RcHm_v2.0_Chr1g0357961 Rosa chinensis HOM05D004139 ORTHO05D004873 9.9e-24 112.8 61 90.2
FAN03G2760 Fragaria x ananassa HOM05D004139 ORTHO05D004873 1.3e-23 112.5 62 88.7
FAN10G1735 Fragaria x ananassa HOM05D004139 ORTHO05D004873 1.3e-23 112.5 62 88.7
FAN10G1927 Fragaria x ananassa HOM05D004139 ORTHO05D004873 1.3e-23 112.5 62 88.7
QL04p055168 Quercus lobata HOM05D004139 ORTHO05D004873 1.3e-23 112.5 65 76.9
Potri.014G089400 Populus trichocarpa HOM05D004139 ORTHO05D004873 1.7e-23 112.1 65 78.5
CiPaw.01G065900 Carya illinoinensis HOM05D004139 ORTHO05D004873 2.2e-23 111.7 65 76.9
FAN06G4247 Fragaria x ananassa HOM05D004139 ORTHO05D004873 2.2e-23 111.7 62 88.7
Nn6g32432 Nelumbo nucifera HOM05D004139 ORTHO05D004873 3.8e-23 110.9 65 80.0
CiPaw.02G034000 Carya illinoinensis HOM05D004139 ORTHO05D004873 4.9e-23 110.5 65 78.5
Dinv32515 Davidia involucrata HOM05D004139 ORTHO05D004873 6.4e-23 110.2 65 78.5
Haze_15555 Corylus avellana HOM05D004139 ORTHO05D004873 8.4e-23 109.8 65 78.5
MD01G1070100 Malus domestica HOM05D004139 ORTHO05D004873 8.4e-23 109.8 65 80.0
Sc23g0002600 Simmondsia chinensis HOM05D004139 ORTHO05D004873 8.4e-23 109.8 66 75.8
Duzib138G1274 Durio zibethinus HOM05D004139 ORTHO05D004873 1.4e-22 109.0 63 79.4
Potri.002G163200 Populus trichocarpa HOM05D004139 ORTHO05D004873 1.9e-22 108.6 65 75.4
Sabra14G0065100 Salix brachista HOM05D004139 ORTHO05D004873 1.9e-22 108.6 65 75.4
GSVIVG01026959001 Vitis vinifera HOM05D004139 ORTHO05D004873 1.9e-22 108.6 65 76.9
Atru.chr5.554 Acer truncatum HOM05D004139 ORTHO05D004873 3.2e-22 107.8 65 75.4
ClCG05G001290 Citrullus lanatus HOM05D004139 ORTHO05D004873 3.2e-22 107.8 65 72.3
TAR636G3175 Trochodendron aralioides HOM05D004139 ORTHO05D004873 3.2e-22 107.8 65 78.5
Gohir.A08G132500 Gossypium hirsutum HOM05D004139 ORTHO05D004873 4.2e-22 107.5 63 77.8
Gohir.D08G153900 Gossypium hirsutum HOM05D004139 ORTHO05D004873 4.2e-22 107.5 63 77.8
Gohir.D11G096700 Gossypium hirsutum HOM05D004139 ORTHO05D004873 4.2e-22 107.5 65 78.5
Gorai.004G159800 Gossypium raimondii HOM05D004139 ORTHO05D004873 4.2e-22 107.5 63 77.8
Gorai.007G103000 Gossypium raimondii HOM05D004139 ORTHO05D004873 4.2e-22 107.5 65 78.5
Rhsim07G0011100 Rhododendron simsii HOM05D004139 ORTHO05D004873 4.2e-22 107.5 65 76.9
vmacro13237 Vaccinium macrocarpon HOM05D004139 ORTHO05D004873 5.4e-22 107.1 65 75.4
Thecc.01G353300 Theobroma cacao HOM05D004139 ORTHO05D004873 7.1e-22 106.7 63 77.8
CSS0009771 Camellia sinensis var. sinensis HOM05D004139 ORTHO05D004873 9.3e-22 106.3 65 75.4
Gohir.A11G091900 Gossypium hirsutum HOM05D004139 ORTHO05D004873 9.3e-22 106.3 63 79.4
MD07G1132400 Malus domestica HOM05D004139 ORTHO05D004873 9.3e-22 106.3 63 79.4
Actinidia10064 Actinidia chinensis HOM05D004139 ORTHO05D004873 1.2e-21 105.9 65 73.8
Ca_07939_v3 Cicer arietinum L. HOM05D004139 ORTHO05D004873 1.2e-21 105.9 65 76.9
MELO3C006085.2 Cucumis melo HOM05D004139 ORTHO05D004873 1.2e-21 105.9 65 70.8
Hund27248 Selenicereus undatus HOM05D004139 ORTHO05D004873 1.2e-21 105.9 65 75.4
MSTRG.28234 Avicennia marina HOM05D004139 ORTHO05D004873 1.6e-21 105.5 66 72.7
AUR62022611 Chenopodium quinoa HOM05D004139 ORTHO05D004873 1.6e-21 105.5 65 73.8
Hma1.2p1_0623F.1_g191015 Hydrangea macrophylla HOM05D004139 ORTHO05D004873 1.6e-21 105.5 66 77.3
Oeu054345.1 Olea europaea HOM05D004139 ORTHO05D004873 1.6e-21 105.5 64 76.6
Os03g0126100 Oryza sativa ssp. japonica HOM05D004139 ORTHO05D004873 1.6e-21 105.5 65 72.3
Sp1g00800 Schrenkiella parvula HOM05D004139 ORTHO05D004873 2.1e-21 105.1 65 73.8
COL.COLO4_12769 Corchorus olitorius HOM05D004139 ORTHO05D004873 2.7e-21 104.8 63 74.6
Glyma.18G237800 Glycine max HOM05D004139 ORTHO05D004873 2.7e-21 104.8 65 75.4
Aa31LG1G10760 Aethionema arabicum HOM05D004139 ORTHO05D004873 3.5e-21 104.4 65 72.3
CANSAT56G2748 Cannabis sativa HOM05D004139 ORTHO05D004873 3.5e-21 104.4 65 72.3
Eucgr.D02321 Eucalyptus grandis HOM05D004139 ORTHO05D004873 3.5e-21 104.4 62 74.2
Medtr7g078990 Medicago truncatula HOM05D004139 ORTHO05D004873 3.5e-21 104.4 65 75.4
PSO478G1271 Papaver somniferum HOM05D004139 ORTHO05D004873 3.5e-21 104.4 65 72.3
Psat3g106200 Pisum sativum HOM05D004139 ORTHO05D004873 3.5e-21 104.4 65 75.4
Glyma.09G255200 Glycine max HOM05D004139 ORTHO05D004873 4.6e-21 104.0 65 75.4
Lalb_Chr03g0038301 Lupinus albus HOM05D004139 ORTHO05D004873 4.6e-21 104.0 65 75.4
Lalb_Chr19g0126891 Lupinus albus HOM05D004139 ORTHO05D004873 4.6e-21 104.0 65 75.4
Manes.01G252900 Manihot esculenta HOM05D004139 ORTHO05D004873 4.6e-21 104.0 65 75.4
Phvul.008G058900 Phaseolus vulgaris HOM05D004139 ORTHO05D004873 4.6e-21 104.0 65 75.4
VMungo1383G0046 Vigna mungo HOM05D004139 ORTHO05D004873 4.6e-21 104.0 65 75.4
Zm00001eb001910 Zea mays HOM05D004139 ORTHO05D004873 4.6e-21 104.0 66 71.2
Cpa.g.sc184.28 Carica papaya HOM05D004139 ORTHO05D004873 6.0e-21 103.6 65 72.3
Nitab4.5_0000915g0160 Nicotiana tabacum HOM05D004139 ORTHO05D004873 6.0e-21 103.6 65 78.5
THA.LOC104801394 Tarenaya hassleriana HOM05D004139 ORTHO05D004873 6.0e-21 103.6 65 73.8
CAN.G78.121 Capsicum annuum HOM05D004139 ORTHO05D004873 7.9e-21 103.2 65 78.5
Nn1g01661 Nelumbo nucifera HOM05D004139 ORTHO05D004873 7.9e-21 103.2 65 70.8
Sed0003876 Sechium edule HOM05D004139 ORTHO05D004873 7.9e-21 103.2 65 72.3
Sed0010543 Sechium edule HOM05D004139 ORTHO05D004873 7.9e-21 103.2 65 69.2
Manes.05G030100 Manihot esculenta HOM05D004139 ORTHO05D004873 1.0e-20 102.8 65 70.8
TPR.G22297 Trifolium pratense HOM05D004139 ORTHO05D004873 1.0e-20 102.8 65 75.4
Actinidia20155 Actinidia chinensis HOM05D004139 ORTHO05D004873 1.3e-20 102.4 65 72.3
Hma1.2p1_0627F.1_g191690 Hydrangea macrophylla HOM05D004139 ORTHO05D004873 1.3e-20 102.4 66 74.2
Lj9A588G64 Lonicera japonica HOM05D004139 ORTHO05D004873 1.3e-20 102.4 64 75.0
Lj1g0024287 Lotus japonicus HOM05D004139 ORTHO05D004873 1.3e-20 102.4 65 73.8
Hund16674 Selenicereus undatus HOM05D004139 ORTHO05D004873 1.3e-20 102.4 65 70.8
AUR62004405 Chenopodium quinoa HOM05D004139 ORTHO05D004873 1.8e-20 102.1 65 70.8
Solyc01g095040.3 Solanum lycopersicum HOM05D004139 ORTHO05D004873 1.8e-20 102.1 65 76.9
Sopen01g038830 Solanum pennellii HOM05D004139 ORTHO05D004873 1.8e-20 102.1 65 76.9
PGSC0003DMG400000190 Solanum tuberosum HOM05D004139 ORTHO05D004873 1.8e-20 102.1 65 76.9
AT1G01510 Arabidopsis thaliana HOM05D004139 ORTHO05D004873 2.3e-20 101.7 65 72.3
arahy.Tifrunner.gnm1.ann1.Y78NPN Arachis hypogaea HOM05D004139 ORTHO05D004873 2.3e-20 101.7 65 73.8
EL10Ac1g00363 Beta vulgaris HOM05D004139 ORTHO05D004873 2.3e-20 101.7 65 70.8
CARHR000860 Cardamine hirsuta HOM05D004139 ORTHO05D004873 2.3e-20 101.7 65 72.3
PGR031G0269 Punica granatum HOM05D004139 ORTHO05D004873 2.3e-20 101.7 64 70.3
Ah.05g180200 Amaranthus hybridus HOM05D004139 ORTHO05D004873 3.0e-20 101.3 65 69.2
AL1G10900 Arabidopsis lyrata HOM05D004139 ORTHO05D004873 3.0e-20 101.3 65 72.3
DCAR_008636 Daucus carota HOM05D004139 ORTHO05D004873 3.0e-20 101.3 65 75.4
Zm00001eb021820 Zea mays HOM05D004139 ORTHO05D004873 3.0e-20 101.3 64 70.3
Ciclev10019285m.g Citrus clementina HOM05D004139 ORTHO05D004873 3.9e-20 100.9 65 72.3
BcaB03g13589 Brassica carinata HOM05D004139 ORTHO05D004873 5.1e-20 100.5 63 74.6
A10p00480 Brassica napus HOM05D004139 ORTHO05D004873 5.1e-20 100.5 63 74.6
C05p00510 Brassica napus HOM05D004139 ORTHO05D004873 5.1e-20 100.5 63 74.6
Peaxi162Scf00020g01226 Petunia axillaris HOM05D004139 ORTHO05D004873 5.1e-20 100.5 65 75.4
Carub.0001s0073 Capsella rubella HOM05D004139 ORTHO05D004873 8.7e-20 99.8 65 70.8
CsaV3_3G008650 Cucumis sativus L. HOM05D004139 ORTHO05D004873 1.1e-19 99.4 65 69.2
Duzib133G0727 Durio zibethinus HOM05D004139 ORTHO05D004873 1.1e-19 99.4 59 78.0
SalBow5G0787 Salvia bowleyana HOM05D004139 ORTHO05D004873 1.1e-19 99.4 65 67.7
SalBow5G4419 Salvia bowleyana HOM05D004139 ORTHO05D004873 1.1e-19 99.4 65 67.7
MSTRG.17294 Avicennia marina HOM05D004139 ORTHO05D004873 1.5e-19 99.0 65 67.7
Os10g0533000 Oryza sativa ssp. japonica HOM05D004139 ORTHO05D004873 1.5e-19 99.0 65 66.2
PSO782G2833 Papaver somniferum HOM05D004139 ORTHO05D004873 1.5e-19 99.0 65 67.7
ATR0661G136 Amborella trichopoda HOM05D004139 ORTHO05D004873 2.5e-19 98.2 65 69.2
Oeu018961.1 Olea europaea HOM05D004139 ORTHO05D004873 2.5e-19 98.2 67 70.1
SalBow3G2657 Salvia bowleyana HOM05D004139 ORTHO05D004873 2.5e-19 98.2 64 73.4
Aqoxy7G00189 Aquilegia oxysepala HOM05D004139 ORTHO05D004873 4.3e-19 97.4 65 69.2
MSTRG.4838 Avicennia marina HOM05D004139 ORTHO05D004873 4.3e-19 97.4 66 69.7
BolC5t28840H Brassica oleracea HOM05D004139 ORTHO05D004873 4.3e-19 97.4 56 78.6
BraA10t42327Z Brassica rapa HOM05D004139 ORTHO05D004873 4.3e-19 97.4 56 78.6
CDE02G4181 Ceratophyllum demersum HOM05D004139 ORTHO05D004873 4.3e-19 97.4 65 72.3
CDE11G0755 Ceratophyllum demersum HOM05D004139 ORTHO05D004873 4.3e-19 97.4 56 76.8
SEGI_14155 Sequoiadendron giganteum HOM05D004139 ORTHO05D004873 4.3e-19 97.4 65 64.6
Hma1.2p1_2961F.1_g330910 Hydrangea macrophylla HOM05D004139 ORTHO05D004873 5.6e-19 97.1 58 77.6
Lsat_1_v5_gn_7_3821 Lactuca sativa HOM05D004139 ORTHO05D004873 5.6e-19 97.1 66 66.7
MBI04_g15071_MAGBIO Magnolia biondii HOM05D004139 ORTHO05D004873 5.6e-19 97.1 53 77.4
arahy.Tifrunner.gnm1.ann1.G1BLE5 Arachis hypogaea HOM05D004139 ORTHO05D004873 7.4e-19 96.7 56 76.8
Cc02_g38470 Coffea canephora HOM05D004139 ORTHO05D004873 7.4e-19 96.7 63 66.7
Thhalv10007060m.g Eutrema salsugineum HOM05D004139 ORTHO05D004873 7.4e-19 96.7 57 77.2
Hund16641 Selenicereus undatus HOM05D004139 ORTHO05D004873 9.6e-19 96.3 65 67.7
SGA_v2.0_scaffold43G16391 Striga asiatica HOM05D004139 ORTHO05D004873 1.6e-18 95.5 68 66.2
ECA236G4877 Erigeron canadensis HOM05D004139 ORTHO05D004873 2.8e-18 94.7 66 66.7
HanXRQChr04g0121381 Helianthus annuus HOM05D004139 ORTHO05D004873 3.6e-18 94.4 65 67.7
RcHm_v2.0_Chr1g0358011 Rosa chinensis HOM05D004139 ORTHO05D004873 4.8e-18 94.0 47 91.5
HanXRQChr06g0170301 Helianthus annuus HOM05D004139 ORTHO05D004873 6.2e-18 93.6 59 72.9
Migut.N01462 Erythranthe guttata HOM05D004139 ORTHO05D004873 1.4e-17 92.4 54 75.9
Nitab4.5_0022943g0010 Nicotiana tabacum HOM05D004139 ORTHO05D004873 1.5e-16 89.0 58 77.6
unitig_0.g2768 Utricularia gibba HOM05D004139 ORTHO05D004873 2.0e-16 88.6 65 67.7
Hma1.2p1_0018F.1_g013550 Hydrangea macrophylla HOM05D004139 ORTHO05D004873 4.5e-16 87.4 60 71.7
HPP92_003462 Vanilla planifolia HOM05D004139 ORTHO05D004873 4.5e-16 87.4 65 64.6
Pp3c3_30270 Physcomitrium patens HOM05D004139 ORTHO05D004873 2.9e-15 84.7 59 62.7
RcHm_v2.0_Chr1g0358111 Rosa chinensis HOM05D004139 ORTHO05D004873 3.8e-15 84.3 50 78.0
Pp3c8_4660 Physcomitrium patens HOM05D004139 ORTHO05D004873 6.4e-15 83.6 53 67.9
unitig_748.g7106 Utricularia gibba HOM05D004139 ORTHO05D004873 8.4e-15 83.2 61 70.5
Mapoly0077s0060 Marchantia polymorpha HOM05D004139 ORTHO05D004873 2.4e-14 81.6 59 59.3
CBR_g48406 Chara braunii HOM05D000019 ORTHO05D000048 9.3e-14 79.7 56 57.1
SHI13389 Sapria himalayana HOM05D004139 ORTHO05D004873 1.2e-13 79.3 65 56.9
Pp3c15_25330 Physcomitrium patens HOM05D004139 ORTHO05D004873 6.0e-13 77.0 55 58.2
AagrBONN_evm.TU.Sc2ySwM_117.2892 Anthoceros agrestis HOM05D004139 ORTHO05D004873 1.3e-12 75.9 56 57.1
Pp3c9_22880 Physcomitrium patens HOM05D004139 ORTHO05D004873 1.5e-11 72.4 55 54.5
SMO259G0050 Selaginella moellendorffii HOM05D004139 ORTHO05D004873 9.6e-11 69.7 57 57.9


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