Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0358141 Rosa chinensis HOM05D004139 ORTHO05D004873 2.5e-101 372.1 187 100.0
RcHm_v2.0_Chr1g0357601 Rosa chinensis HOM05D004139 ORTHO05D004873 4.1e-83 311.6 175 93.1
FvH4_7g15180 Fragaria vesca HOM05D004139 ORTHO05D004873 5.3e-83 311.2 175 93.1
FAN03G2760 Fragaria x ananassa HOM05D004139 ORTHO05D004873 5.3e-83 311.2 175 93.1
FAN06G0792 Fragaria x ananassa HOM05D004139 ORTHO05D004873 2.1e-79 299.3 195 83.6
FAN06G4247 Fragaria x ananassa HOM05D004139 ORTHO05D004873 2.1e-79 299.3 195 83.6
FAN10G1735 Fragaria x ananassa HOM05D004139 ORTHO05D004873 2.1e-79 299.3 195 83.6
FAN10G1927 Fragaria x ananassa HOM05D004139 ORTHO05D004873 3.6e-79 298.5 195 83.6
MD07G1132400 Malus domestica HOM05D004139 ORTHO05D004873 4.6e-79 298.1 175 88.6
FAN01G2783 Fragaria x ananassa HOM05D004139 ORTHO05D004873 8.8e-78 293.9 195 82.6
MD01G1070100 Malus domestica HOM05D004139 ORTHO05D004873 2.0e-77 292.7 175 87.4
Prupe.2G176300 Prunus persica HOM05D004139 ORTHO05D004873 1.2e-74 283.5 166 88.0
CANSAT56G2748 Cannabis sativa HOM05D004139 ORTHO05D004873 2.0e-74 282.7 175 84.0
Sabra14G0065100 Salix brachista HOM05D004139 ORTHO05D004873 1.7e-73 279.6 173 82.1
RcHm_v2.0_Chr1g0357951 Rosa chinensis HOM05D004139 ORTHO05D004873 2.2e-73 279.3 162 90.1
Manes.01G252900 Manihot esculenta HOM05D004139 ORTHO05D004873 3.8e-73 278.5 175 81.7
Cfa003879 Carpinus fangiana HOM05D004139 ORTHO05D004873 5.0e-73 278.1 175 81.7
Haze_15555 Corylus avellana HOM05D004139 ORTHO05D004873 5.0e-73 278.1 175 81.7
CiPaw.02G034000 Carya illinoinensis HOM05D004139 ORTHO05D004873 6.5e-73 277.7 175 81.1
Dinv43858 Davidia involucrata HOM05D004139 ORTHO05D004873 6.5e-73 277.7 175 82.9
Actinidia10064 Actinidia chinensis HOM05D004139 ORTHO05D004873 2.5e-72 275.8 175 80.6
QL04p055168 Quercus lobata HOM05D004139 ORTHO05D004873 2.5e-72 275.8 175 81.7
Manes.05G030100 Manihot esculenta HOM05D004139 ORTHO05D004873 3.2e-72 275.4 175 81.1
Dinv32515 Davidia involucrata HOM05D004139 ORTHO05D004873 1.2e-71 273.5 175 81.1
TWI59G0388 Tripterygium wilfordii HOM05D004139 ORTHO05D004873 1.2e-71 273.5 173 81.5
Potri.002G163200 Populus trichocarpa HOM05D004139 ORTHO05D004873 1.8e-70 269.6 175 80.0
Cpa.g.sc184.28 Carica papaya HOM05D004139 ORTHO05D004873 3.0e-70 268.9 173 81.5
Potri.014G089400 Populus trichocarpa HOM05D004139 ORTHO05D004873 3.0e-70 268.9 176 78.4
Rhsim07G0011100 Rhododendron simsii HOM05D004139 ORTHO05D004873 8.8e-70 267.3 175 80.0
Oeu054345.1 Olea europaea HOM05D004139 ORTHO05D004873 1.5e-69 266.5 175 77.1
CsaV3_3G008650 Cucumis sativus L. HOM05D004139 ORTHO05D004873 3.3e-69 265.4 175 77.1
MELO3C006085.2 Cucumis melo HOM05D004139 ORTHO05D004873 4.4e-69 265.0 175 76.6
Eucgr.D02321 Eucalyptus grandis HOM05D004139 ORTHO05D004873 4.4e-69 265.0 175 76.6
ClCG05G001290 Citrullus lanatus HOM05D004139 ORTHO05D004873 7.4e-69 264.2 175 76.6
Atru.chr5.554 Acer truncatum HOM05D004139 ORTHO05D004873 9.7e-69 263.8 175 79.4
CSS0009771 Camellia sinensis var. sinensis HOM05D004139 ORTHO05D004873 9.7e-69 263.8 175 77.7
COL.COLO4_12769 Corchorus olitorius HOM05D004139 ORTHO05D004873 9.7e-69 263.8 175 78.9
Oeu018961.1 Olea europaea HOM05D004139 ORTHO05D004873 1.3e-68 263.5 175 77.1
CiPaw.01G065900 Carya illinoinensis HOM05D004139 ORTHO05D004873 2.8e-68 262.3 169 78.7
Actinidia20155 Actinidia chinensis HOM05D004139 ORTHO05D004873 3.7e-68 261.9 176 77.3
Thecc.01G353300 Theobroma cacao HOM05D004139 ORTHO05D004873 8.2e-68 260.8 175 77.7
Duzib133G0727 Durio zibethinus HOM05D004139 ORTHO05D004873 2.4e-67 259.2 175 77.7
Sopen01g038830 Solanum pennellii HOM05D004139 ORTHO05D004873 4.1e-67 258.5 175 76.0
THA.LOC104801394 Tarenaya hassleriana HOM05D004139 ORTHO05D004873 5.3e-67 258.1 175 74.9
PGSC0003DMG400000190 Solanum tuberosum HOM05D004139 ORTHO05D004873 7.0e-67 257.7 175 76.0
Sed0003876 Sechium edule HOM05D004139 ORTHO05D004873 9.1e-67 257.3 175 74.9
Solyc01g095040.3 Solanum lycopersicum HOM05D004139 ORTHO05D004873 1.5e-66 256.5 175 75.4
AT1G01510 Arabidopsis thaliana HOM05D004139 ORTHO05D004873 2.0e-66 256.1 175 74.9
AL1G10900 Arabidopsis lyrata HOM05D004139 ORTHO05D004873 2.6e-66 255.8 175 74.9
Duzib138G1274 Durio zibethinus HOM05D004139 ORTHO05D004873 2.6e-66 255.8 175 76.0
Gohir.D11G096700 Gossypium hirsutum HOM05D004139 ORTHO05D004873 2.6e-66 255.8 175 76.0
Gorai.007G103000 Gossypium raimondii HOM05D004139 ORTHO05D004873 2.6e-66 255.8 175 76.0
PGR031G0269 Punica granatum HOM05D004139 ORTHO05D004873 4.5e-66 255.0 175 76.6
Peaxi162Scf00020g01226 Petunia axillaris HOM05D004139 ORTHO05D004873 5.9e-66 254.6 175 74.3
vmacro13237 Vaccinium macrocarpon HOM05D004139 ORTHO05D004873 5.9e-66 254.6 193 71.5
Gohir.A11G091900 Gossypium hirsutum HOM05D004139 ORTHO05D004873 7.7e-66 254.2 175 75.4
Aa31LG1G10760 Aethionema arabicum HOM05D004139 ORTHO05D004873 1.3e-65 253.4 175 73.1
Gohir.A08G132500 Gossypium hirsutum HOM05D004139 ORTHO05D004873 1.3e-65 253.4 175 75.4
Hma1.2p1_0623F.1_g191015 Hydrangea macrophylla HOM05D004139 ORTHO05D004873 2.2e-65 252.7 172 74.4
CAN.G78.121 Capsicum annuum HOM05D004139 ORTHO05D004873 5.0e-65 251.5 175 73.1
Lalb_Chr03g0038301 Lupinus albus HOM05D004139 ORTHO05D004873 5.0e-65 251.5 174 74.1
Sp1g00800 Schrenkiella parvula HOM05D004139 ORTHO05D004873 6.5e-65 251.1 175 73.1
Carub.0001s0073 Capsella rubella HOM05D004139 ORTHO05D004873 8.5e-65 250.8 176 73.9
Glyma.09G255200 Glycine max HOM05D004139 ORTHO05D004873 8.5e-65 250.8 175 75.4
Lalb_Chr19g0126891 Lupinus albus HOM05D004139 ORTHO05D004873 8.5e-65 250.8 175 76.0
Nn6g32432 Nelumbo nucifera HOM05D004139 ORTHO05D004873 8.5e-65 250.8 176 74.4
PSO478G1271 Papaver somniferum HOM05D004139 ORTHO05D004873 1.1e-64 250.4 176 74.4
VMungo1383G0046 Vigna mungo HOM05D004139 ORTHO05D004873 1.5e-64 250.0 175 76.6
Gohir.D08G153900 Gossypium hirsutum HOM05D004139 ORTHO05D004873 1.9e-64 249.6 175 74.9
Gorai.004G159800 Gossypium raimondii HOM05D004139 ORTHO05D004873 1.9e-64 249.6 175 74.9
CARHR000860 Cardamine hirsuta HOM05D004139 ORTHO05D004873 2.5e-64 249.2 175 72.6
Glyma.18G237800 Glycine max HOM05D004139 ORTHO05D004873 2.5e-64 249.2 175 75.4
Nitab4.5_0022943g0010 Nicotiana tabacum HOM05D004139 ORTHO05D004873 4.2e-64 248.4 198 67.2
Phvul.008G058900 Phaseolus vulgaris HOM05D004139 ORTHO05D004873 7.2e-64 247.7 174 75.9
SalBow3G2657 Salvia bowleyana HOM05D004139 ORTHO05D004873 9.4e-64 247.3 176 73.3
DCAR_008636 Daucus carota HOM05D004139 ORTHO05D004873 1.6e-63 246.5 175 75.4
Sabra02G0147300 Salix brachista HOM05D004139 ORTHO05D004873 2.1e-63 246.1 222 62.2
arahy.Tifrunner.gnm1.ann1.Y78NPN Arachis hypogaea HOM05D004139 ORTHO05D004873 8.0e-63 244.2 175 74.9
MSTRG.17294 Avicennia marina HOM05D004139 ORTHO05D004873 8.0e-63 244.2 175 71.4
TAR629G2568 Trochodendron aralioides HOM05D004139 ORTHO05D004873 8.0e-63 244.2 176 75.6
arahy.Tifrunner.gnm1.ann1.G1BLE5 Arachis hypogaea HOM05D004139 ORTHO05D004873 1.0e-62 243.8 175 74.9
TAR636G3175 Trochodendron aralioides HOM05D004139 ORTHO05D004873 1.0e-62 243.8 176 74.4
ECA236G4877 Erigeron canadensis HOM05D004139 ORTHO05D004873 1.4e-62 243.4 176 74.4
Ciclev10019285m.g Citrus clementina HOM05D004139 ORTHO05D004873 1.8e-62 243.0 175 74.9
BcaB03g13589 Brassica carinata HOM05D004139 ORTHO05D004873 2.3e-62 242.7 175 70.3
A10p00480 Brassica napus HOM05D004139 ORTHO05D004873 2.3e-62 242.7 175 70.3
C05p00510 Brassica napus HOM05D004139 ORTHO05D004873 2.3e-62 242.7 175 70.3
BolC5t28840H Brassica oleracea HOM05D004139 ORTHO05D004873 2.3e-62 242.7 175 70.3
Lj1g0024287 Lotus japonicus HOM05D004139 ORTHO05D004873 2.3e-62 242.7 174 73.0
PSO782G2833 Papaver somniferum HOM05D004139 ORTHO05D004873 2.3e-62 242.7 176 72.7
MSTRG.28234 Avicennia marina HOM05D004139 ORTHO05D004873 4.0e-62 241.9 175 70.3
BraA10t42327Z Brassica rapa HOM05D004139 ORTHO05D004873 4.0e-62 241.9 175 70.3
Cc02_g38470 Coffea canephora HOM05D004139 ORTHO05D004873 5.2e-62 241.5 170 74.1
ATR0661G136 Amborella trichopoda HOM05D004139 ORTHO05D004873 8.8e-62 240.7 176 72.7
SalBow5G4419 Salvia bowleyana HOM05D004139 ORTHO05D004873 8.8e-62 240.7 175 71.4
HanXRQChr06g0170301 Helianthus annuus HOM05D004139 ORTHO05D004873 2.0e-61 239.6 175 72.6
Thhalv10007060m.g Eutrema salsugineum HOM05D004139 ORTHO05D004873 5.7e-61 238.0 175 70.9
Ah.05g180200 Amaranthus hybridus HOM05D004139 ORTHO05D004873 7.5e-61 237.7 176 72.2
Aqoxy7G00189 Aquilegia oxysepala HOM05D004139 ORTHO05D004873 1.3e-60 236.9 176 71.6
SalBow5G0787 Salvia bowleyana HOM05D004139 ORTHO05D004873 1.3e-60 236.9 175 70.9
Migut.N01462 Erythranthe guttata HOM05D004139 ORTHO05D004873 2.8e-60 235.7 174 69.5
Nn1g01661 Nelumbo nucifera HOM05D004139 ORTHO05D004873 2.8e-60 235.7 175 71.4
MSTRG.4838 Avicennia marina HOM05D004139 ORTHO05D004873 6.3e-60 234.6 175 71.4
RcHm_v2.0_Chr1g0358061 Rosa chinensis HOM05D004139 ORTHO05D004873 6.3e-60 234.6 137 91.2
AUR62004405 Chenopodium quinoa HOM05D004139 ORTHO05D004873 8.2e-60 234.2 175 72.0
AUR62022611 Chenopodium quinoa HOM05D004139 ORTHO05D004873 8.2e-60 234.2 175 72.0
EL10Ac1g00363 Beta vulgaris HOM05D004139 ORTHO05D004873 1.1e-59 233.8 175 70.9
Hma1.2p1_0627F.1_g191690 Hydrangea macrophylla HOM05D004139 ORTHO05D004873 1.8e-59 233.0 158 75.9
Nitab4.5_0000915g0160 Nicotiana tabacum HOM05D004139 ORTHO05D004873 1.8e-59 233.0 207 62.3
Sc23g0002600 Simmondsia chinensis HOM05D004139 ORTHO05D004873 1.8e-59 233.0 175 70.9
RcHm_v2.0_Chr1g0357891 Rosa chinensis HOM05D005133 ORTHO05D006685 1.6e-58 229.9 137 89.1
SGA_v2.0_scaffold43G16391 Striga asiatica HOM05D004139 ORTHO05D004873 7.7e-58 227.6 175 68.6
Lj9A588G64 Lonicera japonica HOM05D004139 ORTHO05D004873 1.7e-57 226.5 163 73.0
RcHm_v2.0_Chr1g0358101 Rosa chinensis HOM05D004139 ORTHO05D004873 1.7e-57 226.5 137 88.3
TPR.G22297 Trifolium pratense HOM05D004139 ORTHO05D004873 1.7e-57 226.5 174 73.0
Psat3g106200 Pisum sativum HOM05D004139 ORTHO05D004873 3.8e-57 225.3 175 69.7
HanXRQChr04g0121381 Helianthus annuus HOM05D004139 ORTHO05D004873 5.0e-57 224.9 175 68.6
Medtr7g078990 Medicago truncatula HOM05D004139 ORTHO05D004873 5.0e-57 224.9 175 72.6
unitig_748.g7106 Utricularia gibba HOM05D004139 ORTHO05D004873 8.5e-57 224.2 175 65.7
Ca_07939_v3 Cicer arietinum L. HOM05D004139 ORTHO05D004873 1.9e-56 223.0 174 71.3
GSVIVG01026958001 Vitis vinifera HOM05D004139 ORTHO05D004873 1.9e-56 223.0 133 85.0
Hund27248 Selenicereus undatus HOM05D004139 ORTHO05D004873 7.2e-56 221.1 175 68.0
CDE11G0755 Ceratophyllum demersum HOM05D004139 ORTHO05D004873 8.0e-55 217.6 175 68.6
MBI04_g15071_MAGBIO Magnolia biondii HOM05D004139 ORTHO05D004873 1.0e-54 217.2 177 70.1
CDE02G4181 Ceratophyllum demersum HOM05D004139 ORTHO05D004873 4.4e-53 211.8 175 68.6
Os03g0126100 Oryza sativa ssp. japonica HOM05D004139 ORTHO05D004873 4.1e-51 205.3 178 63.5
Lsat_1_v5_gn_7_3821 Lactuca sativa HOM05D004139 ORTHO05D004873 7.0e-51 204.5 158 68.4
SEGI_14155 Sequoiadendron giganteum HOM05D004139 ORTHO05D004873 3.8e-49 198.7 178 59.0
Zm00001eb001910 Zea mays HOM05D004139 ORTHO05D004873 8.5e-49 197.6 175 62.9
Os10g0533000 Oryza sativa ssp. japonica HOM05D004139 ORTHO05D004873 1.4e-46 190.3 177 61.0
Zm00001eb021820 Zea mays HOM05D004139 ORTHO05D004873 2.8e-44 182.6 167 60.5
RcHm_v2.0_Chr1g0357981 Rosa chinensis HOM05D004139 ORTHO05D004873 7.7e-42 174.5 87 97.7
SGA_v2.0_scaffold11G05679 Striga asiatica HOM05D004139 ORTHO05D004873 3.3e-40 169.1 175 54.3
SHI13389 Sapria himalayana HOM05D004139 ORTHO05D004873 7.2e-40 167.9 157 57.3
Sed0010543 Sechium edule HOM05D004139 ORTHO05D004873 3.6e-39 165.6 126 70.6
Mapoly0077s0060 Marchantia polymorpha HOM05D004139 ORTHO05D004873 7.5e-37 157.9 181 50.8
SMO259G0050 Selaginella moellendorffii HOM05D004139 ORTHO05D004873 3.5e-34 149.1 175 48.0
Pp3c15_25330 Physcomitrium patens HOM05D004139 ORTHO05D004873 2.3e-33 146.4 175 48.6
AagrBONN_evm.TU.Sc2ySwM_117.2892 Anthoceros agrestis HOM05D004139 ORTHO05D004873 3.0e-33 146.0 177 48.6
Pp3c9_22880 Physcomitrium patens HOM05D004139 ORTHO05D004873 5.0e-33 145.2 180 48.3
HPP92_003462 Vanilla planifolia HOM05D004139 ORTHO05D004873 7.0e-27 124.8 125 57.6
Hma1.2p1_2961F.1_g330910 Hydrangea macrophylla HOM05D004139 ORTHO05D004873 8.1e-23 111.3 91 69.2
Hund16674 Selenicereus undatus HOM05D004139 ORTHO05D004873 8.1e-23 111.3 189 40.7
FAN06G0709 Fragaria x ananassa HOM05D004139 ORTHO05D000018 2.3e-22 109.8 121 56.2
RcHm_v2.0_Chr5g0017371 Rosa chinensis HOM05D004139 ORTHO05D004873 2.4e-19 99.8 49 93.9
RcHm_v2.0_Chr1g0357991 Rosa chinensis HOM05D004139 ORTHO05D004873 1.6e-18 97.1 59 93.2
HPP92_003463 Vanilla planifolia HOM05D004139 ORTHO05D004873 4.6e-18 95.5 52 84.6
RcHm_v2.0_Chr1g0356181 Rosa chinensis HOM05D004139 ORTHO05D004873 5.1e-17 92.0 47 89.4
unitig_0.g2768 Utricularia gibba HOM05D004139 ORTHO05D004873 7.3e-16 88.2 107 47.7
EL10Ac9g20897 Beta vulgaris HOM05D000877 ORTHO05D012137 7.6e-13 78.2 52 67.3
CBR_g48408 Chara braunii HOM05D004139 ORTHO05D004873 1.5e-08 63.9 57 56.1


User provided reference genes

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