Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0358111 Rosa chinensis HOM05D004139 ORTHO05D004873 6.3e-41 170.2 81 100.0
RcHm_v2.0_Chr1g0358011 Rosa chinensis HOM05D004139 ORTHO05D004873 2.6e-18 95.1 61 83.6
RcHm_v2.0_Chr1g0357901 Rosa chinensis HOM05D004139 ORTHO05D004873 1.3e-17 92.8 57 78.9
MD01G1070100 Malus domestica HOM05D004139 ORTHO05D004873 2.2e-17 92.0 54 79.6
MD07G1132400 Malus domestica HOM05D004139 ORTHO05D004873 3.7e-17 91.3 54 77.8
FvH4_7g15180 Fragaria vesca HOM05D004139 ORTHO05D004873 4.9e-17 90.9 57 77.2
FAN01G2783 Fragaria x ananassa HOM05D004139 ORTHO05D004873 4.9e-17 90.9 57 77.2
FAN06G0792 Fragaria x ananassa HOM05D004139 ORTHO05D004873 4.9e-17 90.9 57 77.2
FAN10G1735 Fragaria x ananassa HOM05D004139 ORTHO05D004873 4.9e-17 90.9 57 77.2
FAN10G1927 Fragaria x ananassa HOM05D004139 ORTHO05D004873 4.9e-17 90.9 57 77.2
Prupe.2G176300 Prunus persica HOM05D004139 ORTHO05D004873 6.4e-17 90.5 54 77.8
FAN03G2760 Fragaria x ananassa HOM05D004139 ORTHO05D004873 1.1e-16 89.7 57 75.4
RcHm_v2.0_Chr1g0357601 Rosa chinensis HOM05D004139 ORTHO05D004873 1.1e-16 89.7 57 75.4
FAN06G4247 Fragaria x ananassa HOM05D004139 ORTHO05D004873 1.9e-16 89.0 57 75.4
Manes.05G030100 Manihot esculenta HOM05D004139 ORTHO05D004873 3.2e-16 88.2 54 72.2
Duzib138G1274 Durio zibethinus HOM05D004139 ORTHO05D004873 5.4e-16 87.4 54 75.9
Nn6g32432 Nelumbo nucifera HOM05D004139 ORTHO05D004873 7.0e-16 87.0 57 70.2
Potri.014G089400 Populus trichocarpa HOM05D004139 ORTHO05D004873 9.2e-16 86.7 54 74.1
QL04p055168 Quercus lobata HOM05D004139 ORTHO05D004873 9.2e-16 86.7 57 70.2
RcHm_v2.0_Chr1g0357961 Rosa chinensis HOM05D004139 ORTHO05D004873 9.2e-16 86.7 51 82.4
TAR629G2568 Trochodendron aralioides HOM05D004139 ORTHO05D004873 9.2e-16 86.7 57 70.2
Cfa003879 Carpinus fangiana HOM05D004139 ORTHO05D004873 1.2e-15 86.3 54 75.9
Haze_15555 Corylus avellana HOM05D004139 ORTHO05D004873 1.2e-15 86.3 54 75.9
Thecc.01G353300 Theobroma cacao HOM05D004139 ORTHO05D004873 1.2e-15 86.3 54 74.1
TPR.G22297 Trifolium pratense HOM05D004139 ORTHO05D004873 1.2e-15 86.3 57 71.9
TAR636G3175 Trochodendron aralioides HOM05D004139 ORTHO05D004873 1.2e-15 86.3 54 74.1
Ca_07939_v3 Cicer arietinum L. HOM05D004139 ORTHO05D004873 1.6e-15 85.9 57 70.2
Ciclev10019285m.g Citrus clementina HOM05D004139 ORTHO05D004873 1.6e-15 85.9 57 70.2
Manes.01G252900 Manihot esculenta HOM05D004139 ORTHO05D004873 1.6e-15 85.9 54 74.1
Medtr7g078990 Medicago truncatula HOM05D004139 ORTHO05D004873 1.6e-15 85.9 57 70.2
Psat3g106200 Pisum sativum HOM05D004139 ORTHO05D004873 1.6e-15 85.9 57 70.2
Sed0003876 Sechium edule HOM05D004139 ORTHO05D004873 1.6e-15 85.9 54 74.1
TWI59G0388 Tripterygium wilfordii HOM05D004139 ORTHO05D004873 1.6e-15 85.9 54 70.4
Atru.chr5.554 Acer truncatum HOM05D004139 ORTHO05D004873 2.7e-15 85.1 54 70.4
Eucgr.D02321 Eucalyptus grandis HOM05D004139 ORTHO05D004873 2.7e-15 85.1 54 72.2
Glyma.09G255200 Glycine max HOM05D004139 ORTHO05D004873 2.7e-15 85.1 57 68.4
Glyma.18G237800 Glycine max HOM05D004139 ORTHO05D004873 2.7e-15 85.1 57 68.4
Phvul.008G058900 Phaseolus vulgaris HOM05D004139 ORTHO05D004873 2.7e-15 85.1 57 68.4
Sabra02G0147300 Salix brachista HOM05D004139 ORTHO05D004873 2.7e-15 85.1 57 68.4
VMungo1383G0046 Vigna mungo HOM05D004139 ORTHO05D004873 2.7e-15 85.1 57 68.4
arahy.Tifrunner.gnm1.ann1.G1BLE5 Arachis hypogaea HOM05D004139 ORTHO05D004873 3.5e-15 84.7 57 68.4
arahy.Tifrunner.gnm1.ann1.Y78NPN Arachis hypogaea HOM05D004139 ORTHO05D004873 3.5e-15 84.7 57 68.4
ClCG05G001290 Citrullus lanatus HOM05D004139 ORTHO05D004873 3.5e-15 84.7 57 66.7
Lalb_Chr03g0038301 Lupinus albus HOM05D004139 ORTHO05D004873 3.5e-15 84.7 66 62.1
Lalb_Chr19g0126891 Lupinus albus HOM05D004139 ORTHO05D004873 3.5e-15 84.7 66 62.1
THA.LOC104801394 Tarenaya hassleriana HOM05D004139 ORTHO05D004873 3.5e-15 84.7 53 73.6
CANSAT56G2748 Cannabis sativa HOM05D004139 ORTHO05D004873 4.6e-15 84.3 57 68.4
Gohir.A08G132500 Gossypium hirsutum HOM05D004139 ORTHO05D004873 4.6e-15 84.3 54 72.2
Gohir.A11G091900 Gossypium hirsutum HOM05D004139 ORTHO05D004873 4.6e-15 84.3 54 74.1
Gohir.D08G153900 Gossypium hirsutum HOM05D004139 ORTHO05D004873 4.6e-15 84.3 54 72.2
Gohir.D11G096700 Gossypium hirsutum HOM05D004139 ORTHO05D004873 4.6e-15 84.3 54 74.1
Gorai.004G159800 Gossypium raimondii HOM05D004139 ORTHO05D004873 4.6e-15 84.3 54 72.2
Gorai.007G103000 Gossypium raimondii HOM05D004139 ORTHO05D004873 4.6e-15 84.3 54 74.1
CiPaw.01G065900 Carya illinoinensis HOM05D004139 ORTHO05D004873 6.0e-15 84.0 57 68.4
CiPaw.02G034000 Carya illinoinensis HOM05D004139 ORTHO05D004873 6.0e-15 84.0 57 70.2
Lj1g0024287 Lotus japonicus HOM05D004139 ORTHO05D004873 6.0e-15 84.0 66 62.1
RcHm_v2.0_Chr1g0358151 Rosa chinensis HOM05D004139 ORTHO05D004873 7.8e-15 83.6 50 78.0
GSVIVG01026959001 Vitis vinifera HOM05D004139 ORTHO05D004873 7.8e-15 83.6 54 70.4
Dinv43858 Davidia involucrata HOM05D004139 ORTHO05D004873 1.0e-14 83.2 54 70.4
MBI04_g15071_MAGBIO Magnolia biondii HOM05D004139 ORTHO05D004873 1.0e-14 83.2 54 68.5
PGR031G0269 Punica granatum HOM05D004139 ORTHO05D004873 1.0e-14 83.2 54 70.4
Sabra14G0065100 Salix brachista HOM05D004139 ORTHO05D004873 1.0e-14 83.2 54 70.4
Sed0010543 Sechium edule HOM05D004139 ORTHO05D004873 1.0e-14 83.2 57 66.7
Sc23g0002600 Simmondsia chinensis HOM05D004139 ORTHO05D004873 1.0e-14 83.2 53 67.9
Cpa.g.sc184.28 Carica papaya HOM05D004139 ORTHO05D004873 1.3e-14 82.8 54 68.5
MELO3C006085.2 Cucumis melo HOM05D004139 ORTHO05D004873 1.3e-14 82.8 57 64.9
Hma1.2p1_0623F.1_g191015 Hydrangea macrophylla HOM05D004139 ORTHO05D004873 1.3e-14 82.8 54 70.4
Hma1.2p1_2961F.1_g330910 Hydrangea macrophylla HOM05D004139 ORTHO05D004873 1.3e-14 82.8 54 70.4
Aa31LG1G10760 Aethionema arabicum HOM05D004139 ORTHO05D004873 1.7e-14 82.4 53 71.7
BcaB03g13589 Brassica carinata HOM05D004139 ORTHO05D004873 1.7e-14 82.4 53 71.7
A10p00480 Brassica napus HOM05D004139 ORTHO05D004873 1.7e-14 82.4 53 71.7
C05p00510 Brassica napus HOM05D004139 ORTHO05D004873 1.7e-14 82.4 53 71.7
BolC5t28840H Brassica oleracea HOM05D004139 ORTHO05D004873 1.7e-14 82.4 53 71.7
BraA10t42327Z Brassica rapa HOM05D004139 ORTHO05D004873 1.7e-14 82.4 53 71.7
AUR62022611 Chenopodium quinoa HOM05D004139 ORTHO05D004873 1.7e-14 82.4 53 71.7
Thhalv10007060m.g Eutrema salsugineum HOM05D004139 ORTHO05D004873 1.7e-14 82.4 53 71.7
Rhsim07G0011100 Rhododendron simsii HOM05D004139 ORTHO05D004873 1.7e-14 82.4 54 72.2
RcHm_v2.0_Chr1g0358071 Rosa chinensis HOM05D004139 ORTHO05D004873 1.7e-14 82.4 50 78.0
Sp1g00800 Schrenkiella parvula HOM05D004139 ORTHO05D004873 1.7e-14 82.4 53 71.7
COL.COLO4_12769 Corchorus olitorius HOM05D004139 ORTHO05D004873 2.3e-14 82.0 53 71.7
Oeu018961.1 Olea europaea HOM05D004139 ORTHO05D004873 2.3e-14 82.0 54 70.4
PSO478G1271 Papaver somniferum HOM05D004139 ORTHO05D004873 2.3e-14 82.0 54 68.5
PSO782G2833 Papaver somniferum HOM05D004139 ORTHO05D004873 2.3e-14 82.0 54 68.5
Potri.002G163200 Populus trichocarpa HOM05D004139 ORTHO05D004873 2.3e-14 82.0 54 70.4
Hund27248 Selenicereus undatus HOM05D004139 ORTHO05D004873 2.3e-14 82.0 53 71.7
vmacro13237 Vaccinium macrocarpon HOM05D004139 ORTHO05D004873 2.3e-14 82.0 54 70.4
EL10Ac1g00363 Beta vulgaris HOM05D004139 ORTHO05D004873 3.0e-14 81.6 53 69.8
CsaV3_3G008650 Cucumis sativus L. HOM05D004139 ORTHO05D004873 3.0e-14 81.6 57 63.2
DCAR_008636 Daucus carota HOM05D004139 ORTHO05D004873 3.0e-14 81.6 54 68.5
CAN.G78.121 Capsicum annuum HOM05D004139 ORTHO05D004873 3.9e-14 81.3 54 70.4
CDE11G0755 Ceratophyllum demersum HOM05D004139 ORTHO05D004873 3.9e-14 81.3 54 68.5
Nitab4.5_0000915g0160 Nicotiana tabacum HOM05D004139 ORTHO05D004873 3.9e-14 81.3 54 70.4
Os10g0533000 Oryza sativa ssp. japonica HOM05D004139 ORTHO05D004873 3.9e-14 81.3 57 64.9
Solyc01g095040.3 Solanum lycopersicum HOM05D004139 ORTHO05D004873 3.9e-14 81.3 54 70.4
Sopen01g038830 Solanum pennellii HOM05D004139 ORTHO05D004873 3.9e-14 81.3 54 70.4
PGSC0003DMG400000190 Solanum tuberosum HOM05D004139 ORTHO05D004873 3.9e-14 81.3 54 70.4
Actinidia10064 Actinidia chinensis HOM05D004139 ORTHO05D004873 5.0e-14 80.9 53 69.8
AUR62004405 Chenopodium quinoa HOM05D004139 ORTHO05D004873 5.0e-14 80.9 53 69.8
Oeu054345.1 Olea europaea HOM05D004139 ORTHO05D004873 5.0e-14 80.9 54 68.5
Os03g0126100 Oryza sativa ssp. japonica HOM05D004139 ORTHO05D004873 5.0e-14 80.9 57 64.9
ATR0661G136 Amborella trichopoda HOM05D004139 ORTHO05D004873 6.6e-14 80.5 54 63.0
AL1G10900 Arabidopsis lyrata HOM05D004139 ORTHO05D004873 6.6e-14 80.5 53 69.8
AT1G01510 Arabidopsis thaliana HOM05D004139 ORTHO05D004873 6.6e-14 80.5 53 69.8
Carub.0001s0073 Capsella rubella HOM05D004139 ORTHO05D004873 6.6e-14 80.5 53 69.8
CARHR000860 Cardamine hirsuta HOM05D004139 ORTHO05D004873 6.6e-14 80.5 53 69.8
Dinv32515 Davidia involucrata HOM05D004139 ORTHO05D004873 6.6e-14 80.5 54 70.4
Duzib133G0727 Durio zibethinus HOM05D004139 ORTHO05D004873 6.6e-14 80.5 43 86.0
Nn1g01661 Nelumbo nucifera HOM05D004139 ORTHO05D004873 6.6e-14 80.5 57 63.2
Zm00001eb001910 Zea mays HOM05D004139 ORTHO05D004873 6.6e-14 80.5 57 64.9
SalBow3G2657 Salvia bowleyana HOM05D004139 ORTHO05D004873 8.6e-14 80.1 54 68.5
SEGI_14155 Sequoiadendron giganteum HOM05D004139 ORTHO05D004873 8.6e-14 80.1 53 66.0
CDE02G4181 Ceratophyllum demersum HOM05D004139 ORTHO05D004873 1.1e-13 79.7 54 68.5
Lsat_1_v5_gn_7_3821 Lactuca sativa HOM05D004139 ORTHO05D004873 1.1e-13 79.7 53 67.9
CSS0009771 Camellia sinensis var. sinensis HOM05D004139 ORTHO05D004873 1.5e-13 79.3 54 68.5
Lj9A588G64 Lonicera japonica HOM05D004139 ORTHO05D004873 1.5e-13 79.3 53 71.7
Aqoxy7G00189 Aquilegia oxysepala HOM05D004139 ORTHO05D004873 1.9e-13 79.0 53 67.9
Migut.N01462 Erythranthe guttata HOM05D004139 ORTHO05D004873 1.9e-13 79.0 54 68.5
Peaxi162Scf00020g01226 Petunia axillaris HOM05D004139 ORTHO05D004873 2.5e-13 78.6 54 66.7
Ah.05g180200 Amaranthus hybridus HOM05D004139 ORTHO05D004873 3.3e-13 78.2 53 66.0
MSTRG.28234 Avicennia marina HOM05D004139 ORTHO05D004873 3.3e-13 78.2 54 66.7
Actinidia20155 Actinidia chinensis HOM05D004139 ORTHO05D004873 4.3e-13 77.8 53 67.9
Hund16674 Selenicereus undatus HOM05D004139 ORTHO05D004873 4.3e-13 77.8 53 66.0
HanXRQChr04g0121381 Helianthus annuus HOM05D004139 ORTHO05D004873 5.6e-13 77.4 53 67.9
SGA_v2.0_scaffold43G16391 Striga asiatica HOM05D004139 ORTHO05D004873 5.6e-13 77.4 54 64.8
Zm00001eb021820 Zea mays HOM05D004139 ORTHO05D004873 5.6e-13 77.4 57 61.4
HPP92_003462 Vanilla planifolia HOM05D004139 ORTHO05D004873 7.3e-13 77.0 53 66.0
ECA236G4877 Erigeron canadensis HOM05D004139 ORTHO05D004873 9.5e-13 76.6 53 67.9
HanXRQChr06g0170301 Helianthus annuus HOM05D004139 ORTHO05D004873 1.2e-12 76.3 53 66.0
Hma1.2p1_0627F.1_g191690 Hydrangea macrophylla HOM05D004139 ORTHO05D004873 1.2e-12 76.3 53 64.2
SalBow5G0787 Salvia bowleyana HOM05D004139 ORTHO05D004873 1.6e-12 75.9 57 61.4
SalBow5G4419 Salvia bowleyana HOM05D004139 ORTHO05D004873 1.6e-12 75.9 57 61.4
MSTRG.4838 Avicennia marina HOM05D004139 ORTHO05D004873 2.1e-12 75.5 57 63.2
Cc02_g38470 Coffea canephora HOM05D004139 ORTHO05D004873 2.1e-12 75.5 54 63.0
MSTRG.17294 Avicennia marina HOM05D004139 ORTHO05D004873 2.8e-12 75.1 54 61.1
Pp3c8_4660 Physcomitrium patens HOM05D004139 ORTHO05D004873 3.6e-12 74.7 53 66.0
Hund16641 Selenicereus undatus HOM05D004139 ORTHO05D004873 4.7e-12 74.3 53 64.2
unitig_0.g2768 Utricularia gibba HOM05D004139 ORTHO05D004873 1.8e-11 72.4 54 64.8
Mapoly0077s0060 Marchantia polymorpha HOM05D004139 ORTHO05D004873 4.0e-11 71.2 53 62.3
Pp3c3_30270 Physcomitrium patens HOM05D004139 ORTHO05D004873 4.0e-11 71.2 57 59.6
Nitab4.5_0022943g0010 Nicotiana tabacum HOM05D004139 ORTHO05D004873 1.2e-10 69.7 40 80.0
unitig_748.g7106 Utricularia gibba HOM05D004139 ORTHO05D004873 2.0e-10 68.9 43 76.7
Hma1.2p1_0018F.1_g013550 Hydrangea macrophylla HOM05D004139 ORTHO05D004873 5.8e-10 67.4 45 64.4
SHI13389 Sapria himalayana HOM05D004139 ORTHO05D004873 5.8e-10 67.4 42 71.4
Pp3c15_25330 Physcomitrium patens HOM05D004139 ORTHO05D004873 7.5e-10 67.0 53 56.6
CBR_g48406 Chara braunii HOM05D000019 ORTHO05D000048 1.7e-09 65.9 53 50.9
AagrBONN_evm.TU.Sc2ySwM_117.2892 Anthoceros agrestis HOM05D004139 ORTHO05D004873 4.9e-09 64.3 53 50.9
Pp3c9_22880 Physcomitrium patens HOM05D004139 ORTHO05D004873 1.9e-08 62.4 52 51.9
SMO259G0050 Selaginella moellendorffii HOM05D004139 ORTHO05D004873 1.9e-08 62.4 53 52.8


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