Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0358081 Rosa chinensis HOM05D004139 ORTHO05D004873 2.0e-22 108.2 54 100.0
RcHm_v2.0_Chr1g0358161 Rosa chinensis HOM05D004139 ORTHO05D004873 2.0e-22 108.2 54 100.0
MD01G1070100 Malus domestica HOM05D004139 ORTHO05D004873 4.2e-17 90.5 51 86.3
Solyc01g095040.3 Solanum lycopersicum HOM05D004139 ORTHO05D004873 1.6e-16 88.6 51 82.4
Sopen01g038830 Solanum pennellii HOM05D004139 ORTHO05D004873 1.6e-16 88.6 51 82.4
PGSC0003DMG400000190 Solanum tuberosum HOM05D004139 ORTHO05D004873 1.6e-16 88.6 51 82.4
CAN.G78.121 Capsicum annuum HOM05D004139 ORTHO05D004873 2.1e-16 88.2 51 80.4
MD07G1132400 Malus domestica HOM05D004139 ORTHO05D004873 2.1e-16 88.2 51 84.3
AT1G01510 Arabidopsis thaliana HOM05D004139 ORTHO05D004873 2.8e-16 87.8 51 80.4
Carub.0001s0073 Capsella rubella HOM05D004139 ORTHO05D004873 2.8e-16 87.8 51 80.4
CARHR000860 Cardamine hirsuta HOM05D004139 ORTHO05D004873 2.8e-16 87.8 51 80.4
Eucgr.D02321 Eucalyptus grandis HOM05D004139 ORTHO05D004873 2.8e-16 87.8 51 80.4
Thhalv10007060m.g Eutrema salsugineum HOM05D004139 ORTHO05D004873 2.8e-16 87.8 51 80.4
Sp1g00800 Schrenkiella parvula HOM05D004139 ORTHO05D004873 2.8e-16 87.8 51 80.4
TAR629G2568 Trochodendron aralioides HOM05D004139 ORTHO05D004873 2.8e-16 87.8 51 80.4
RcHm_v2.0_Chr1g0357601 Rosa chinensis HOM05D004139 ORTHO05D004873 4.7e-16 87.0 51 86.3
FAN01G2783 Fragaria x ananassa HOM05D004139 ORTHO05D004873 6.1e-16 86.7 51 84.3
FAN03G2760 Fragaria x ananassa HOM05D004139 ORTHO05D004873 6.1e-16 86.7 51 84.3
FAN10G1735 Fragaria x ananassa HOM05D004139 ORTHO05D004873 6.1e-16 86.7 51 84.3
FAN10G1927 Fragaria x ananassa HOM05D004139 ORTHO05D004873 6.1e-16 86.7 51 84.3
Lsat_1_v5_gn_7_3821 Lactuca sativa HOM05D004139 ORTHO05D004873 6.1e-16 86.7 51 84.3
QL04p055168 Quercus lobata HOM05D004139 ORTHO05D004873 6.1e-16 86.7 51 82.4
vmacro13237 Vaccinium macrocarpon HOM05D004139 ORTHO05D004873 6.1e-16 86.7 51 84.3
Lj1g0024287 Lotus japonicus HOM05D004139 ORTHO05D004873 8.0e-16 86.3 51 84.3
Oeu018961.1 Olea europaea HOM05D004139 ORTHO05D004873 8.0e-16 86.3 51 80.4
AL1G10900 Arabidopsis lyrata HOM05D004139 ORTHO05D004873 1.0e-15 85.9 51 78.4
COL.COLO4_12769 Corchorus olitorius HOM05D004139 ORTHO05D004873 1.0e-15 85.9 51 82.4
Thecc.01G353300 Theobroma cacao HOM05D004139 ORTHO05D004873 1.0e-15 85.9 51 82.4
Aa31LG1G10760 Aethionema arabicum HOM05D004139 ORTHO05D004873 1.4e-15 85.5 51 76.5
CANSAT56G2748 Cannabis sativa HOM05D004139 ORTHO05D004873 1.4e-15 85.5 51 80.4
FvH4_7g15180 Fragaria vesca HOM05D004139 ORTHO05D004873 1.4e-15 85.5 51 82.4
FAN06G0792 Fragaria x ananassa HOM05D004139 ORTHO05D004873 1.4e-15 85.5 51 82.4
Manes.01G252900 Manihot esculenta HOM05D004139 ORTHO05D004873 1.4e-15 85.5 51 80.4
Manes.05G030100 Manihot esculenta HOM05D004139 ORTHO05D004873 1.4e-15 85.5 51 80.4
BcaB03g13589 Brassica carinata HOM05D004139 ORTHO05D004873 1.8e-15 85.1 51 78.4
A10p00480 Brassica napus HOM05D004139 ORTHO05D004873 1.8e-15 85.1 51 78.4
C05p00510 Brassica napus HOM05D004139 ORTHO05D004873 1.8e-15 85.1 51 78.4
BolC5t28840H Brassica oleracea HOM05D004139 ORTHO05D004873 1.8e-15 85.1 51 78.4
BraA10t42327Z Brassica rapa HOM05D004139 ORTHO05D004873 1.8e-15 85.1 51 78.4
Hma1.2p1_0627F.1_g191690 Hydrangea macrophylla HOM05D004139 ORTHO05D004873 1.8e-15 85.1 51 78.4
Prupe.2G176300 Prunus persica HOM05D004139 ORTHO05D004873 1.8e-15 85.1 51 80.4
Zm00001eb021820 Zea mays HOM05D004139 ORTHO05D004873 1.8e-15 85.1 51 78.4
Actinidia10064 Actinidia chinensis HOM05D004139 ORTHO05D004873 2.3e-15 84.7 51 80.4
CSS0009771 Camellia sinensis var. sinensis HOM05D004139 ORTHO05D004873 2.3e-15 84.7 51 78.4
CsaV3_3G008650 Cucumis sativus L. HOM05D004139 ORTHO05D004873 2.3e-15 84.7 51 80.4
Gohir.D08G153900 Gossypium hirsutum HOM05D004139 ORTHO05D004873 2.3e-15 84.7 51 80.4
Gorai.004G159800 Gossypium raimondii HOM05D004139 ORTHO05D004873 2.3e-15 84.7 51 80.4
HanXRQChr04g0121381 Helianthus annuus HOM05D004139 ORTHO05D004873 2.3e-15 84.7 51 82.4
Phvul.008G058900 Phaseolus vulgaris HOM05D004139 ORTHO05D004873 2.3e-15 84.7 51 80.4
SalBow5G0787 Salvia bowleyana HOM05D004139 ORTHO05D004873 2.3e-15 84.7 51 80.4
SalBow5G4419 Salvia bowleyana HOM05D004139 ORTHO05D004873 2.3e-15 84.7 51 80.4
VMungo1383G0046 Vigna mungo HOM05D004139 ORTHO05D004873 2.3e-15 84.7 51 80.4
Zm00001eb001910 Zea mays HOM05D004139 ORTHO05D004873 2.3e-15 84.7 51 78.4
Cfa003879 Carpinus fangiana HOM05D004139 ORTHO05D004873 3.0e-15 84.3 51 76.5
ClCG05G001290 Citrullus lanatus HOM05D004139 ORTHO05D004873 3.0e-15 84.3 51 78.4
Haze_15555 Corylus avellana HOM05D004139 ORTHO05D004873 3.0e-15 84.3 51 76.5
MELO3C006085.2 Cucumis melo HOM05D004139 ORTHO05D004873 3.0e-15 84.3 51 78.4
Dinv43858 Davidia involucrata HOM05D004139 ORTHO05D004873 3.0e-15 84.3 51 78.4
Glyma.09G255200 Glycine max HOM05D004139 ORTHO05D004873 3.0e-15 84.3 51 80.4
Glyma.18G237800 Glycine max HOM05D004139 ORTHO05D004873 3.0e-15 84.3 51 80.4
Hma1.2p1_0623F.1_g191015 Hydrangea macrophylla HOM05D004139 ORTHO05D004873 3.0e-15 84.3 51 78.4
Hma1.2p1_2961F.1_g330910 Hydrangea macrophylla HOM05D004139 ORTHO05D004873 3.0e-15 84.3 51 78.4
Aqoxy7G00189 Aquilegia oxysepala HOM05D004139 ORTHO05D004873 4.0e-15 84.0 51 78.4
Cpa.g.sc184.28 Carica papaya HOM05D004139 ORTHO05D004873 4.0e-15 84.0 51 76.5
DCAR_008636 Daucus carota HOM05D004139 ORTHO05D004873 4.0e-15 84.0 51 76.5
Gohir.A08G132500 Gossypium hirsutum HOM05D004139 ORTHO05D004873 4.0e-15 84.0 51 78.4
Gohir.D11G096700 Gossypium hirsutum HOM05D004139 ORTHO05D004873 4.0e-15 84.0 51 80.4
Gorai.007G103000 Gossypium raimondii HOM05D004139 ORTHO05D004873 4.0e-15 84.0 51 80.4
Lalb_Chr19g0126891 Lupinus albus HOM05D004139 ORTHO05D004873 4.0e-15 84.0 51 82.4
Nn6g32432 Nelumbo nucifera HOM05D004139 ORTHO05D004873 4.0e-15 84.0 51 78.4
Rhsim07G0011100 Rhododendron simsii HOM05D004139 ORTHO05D004873 4.0e-15 84.0 51 82.4
Sed0003876 Sechium edule HOM05D004139 ORTHO05D004873 4.0e-15 84.0 51 76.5
Sed0010543 Sechium edule HOM05D004139 ORTHO05D004873 4.0e-15 84.0 51 76.5
TWI59G0388 Tripterygium wilfordii HOM05D004139 ORTHO05D004873 4.0e-15 84.0 51 78.4
TAR636G3175 Trochodendron aralioides HOM05D004139 ORTHO05D004873 4.0e-15 84.0 51 78.4
Cc02_g38470 Coffea canephora HOM05D004139 ORTHO05D004873 5.2e-15 83.6 51 78.4
Migut.N01462 Erythranthe guttata HOM05D004139 ORTHO05D004873 5.2e-15 83.6 51 78.4
HanXRQChr06g0170301 Helianthus annuus HOM05D004139 ORTHO05D004873 5.2e-15 83.6 51 78.4
Lalb_Chr03g0038301 Lupinus albus HOM05D004139 ORTHO05D004873 5.2e-15 83.6 51 80.4
Os03g0126100 Oryza sativa ssp. japonica HOM05D004139 ORTHO05D004873 5.2e-15 83.6 51 76.5
Os10g0533000 Oryza sativa ssp. japonica HOM05D004139 ORTHO05D004873 5.2e-15 83.6 51 76.5
Peaxi162Scf00020g01226 Petunia axillaris HOM05D004139 ORTHO05D004873 5.2e-15 83.6 51 78.4
Potri.002G163200 Populus trichocarpa HOM05D004139 ORTHO05D004873 5.2e-15 83.6 51 78.4
Potri.014G089400 Populus trichocarpa HOM05D004139 ORTHO05D004873 5.2e-15 83.6 51 78.4
PGR031G0269 Punica granatum HOM05D004139 ORTHO05D004873 5.2e-15 83.6 51 78.4
Sabra02G0147300 Salix brachista HOM05D004139 ORTHO05D004873 5.2e-15 83.6 51 78.4
THA.LOC104801394 Tarenaya hassleriana HOM05D004139 ORTHO05D004873 5.2e-15 83.6 51 78.4
GSVIVG01026959001 Vitis vinifera HOM05D004139 ORTHO05D004873 5.2e-15 83.6 51 76.5
ATR0661G136 Amborella trichopoda HOM05D004139 ORTHO05D004873 6.8e-15 83.2 51 76.5
arahy.Tifrunner.gnm1.ann1.G1BLE5 Arachis hypogaea HOM05D004139 ORTHO05D004873 6.8e-15 83.2 51 80.4
arahy.Tifrunner.gnm1.ann1.Y78NPN Arachis hypogaea HOM05D004139 ORTHO05D004873 6.8e-15 83.2 51 80.4
FAN06G4247 Fragaria x ananassa HOM05D004139 ORTHO05D004873 6.8e-15 83.2 51 80.4
Medtr7g078990 Medicago truncatula HOM05D004139 ORTHO05D004873 6.8e-15 83.2 51 80.4
Psat3g106200 Pisum sativum HOM05D004139 ORTHO05D004873 6.8e-15 83.2 51 80.4
TPR.G22297 Trifolium pratense HOM05D004139 ORTHO05D004873 6.8e-15 83.2 51 80.4
MSTRG.4838 Avicennia marina HOM05D004139 ORTHO05D004873 8.9e-15 82.8 51 78.4
CiPaw.02G034000 Carya illinoinensis HOM05D004139 ORTHO05D004873 1.2e-14 82.4 47 83.0
Gohir.A11G091900 Gossypium hirsutum HOM05D004139 ORTHO05D004873 1.2e-14 82.4 51 78.4
Nn1g01661 Nelumbo nucifera HOM05D004139 ORTHO05D004873 1.5e-14 82.0 51 76.5
Atru.chr5.554 Acer truncatum HOM05D004139 ORTHO05D004873 2.0e-14 81.6 51 78.4
Ciclev10019285m.g Citrus clementina HOM05D004139 ORTHO05D004873 2.0e-14 81.6 51 76.5
Duzib138G1274 Durio zibethinus HOM05D004139 ORTHO05D004873 2.0e-14 81.6 51 80.4
MBI04_g15071_MAGBIO Magnolia biondii HOM05D004139 ORTHO05D004873 2.0e-14 81.6 51 72.5
Nitab4.5_0000915g0160 Nicotiana tabacum HOM05D004139 ORTHO05D004873 2.0e-14 81.6 51 76.5
SGA_v2.0_scaffold43G16391 Striga asiatica HOM05D004139 ORTHO05D004873 2.0e-14 81.6 51 76.5
MSTRG.17294 Avicennia marina HOM05D004139 ORTHO05D004873 2.6e-14 81.3 51 76.5
MSTRG.28234 Avicennia marina HOM05D004139 ORTHO05D004873 2.6e-14 81.3 51 76.5
Lj9A588G64 Lonicera japonica HOM05D004139 ORTHO05D004873 2.6e-14 81.3 51 74.5
Oeu054345.1 Olea europaea HOM05D004139 ORTHO05D004873 3.4e-14 80.9 51 74.5
PSO478G1271 Papaver somniferum HOM05D004139 ORTHO05D004873 3.4e-14 80.9 51 78.4
PSO782G2833 Papaver somniferum HOM05D004139 ORTHO05D004873 3.4e-14 80.9 51 78.4
SEGI_14155 Sequoiadendron giganteum HOM05D004139 ORTHO05D004873 3.4e-14 80.9 51 72.5
SalBow3G2657 Salvia bowleyana HOM05D004139 ORTHO05D004873 4.4e-14 80.5 51 76.5
Hund16641 Selenicereus undatus HOM05D004139 ORTHO05D004873 4.4e-14 80.5 51 74.5
Hund16674 Selenicereus undatus HOM05D004139 ORTHO05D004873 4.4e-14 80.5 51 74.5
Dinv32515 Davidia involucrata HOM05D004139 ORTHO05D004873 5.7e-14 80.1 51 72.5
Ah.05g180200 Amaranthus hybridus HOM05D004139 ORTHO05D004873 7.5e-14 79.7 51 72.5
Sc23g0002600 Simmondsia chinensis HOM05D004139 ORTHO05D004873 7.5e-14 79.7 51 72.5
ECA236G4877 Erigeron canadensis HOM05D004139 ORTHO05D004873 9.8e-14 79.3 51 78.4
RcHm_v2.0_Chr1g0357901 Rosa chinensis HOM05D004139 ORTHO05D004873 9.8e-14 79.3 48 81.2
SGA_v2.0_scaffold11G05679 Striga asiatica HOM05D004139 ORTHO05D004873 9.8e-14 79.3 51 72.5
EL10Ac1g00363 Beta vulgaris HOM05D004139 ORTHO05D004873 1.3e-13 79.0 51 70.6
CDE02G4181 Ceratophyllum demersum HOM05D004139 ORTHO05D004873 1.3e-13 79.0 51 72.5
AUR62022611 Chenopodium quinoa HOM05D004139 ORTHO05D004873 1.7e-13 78.6 51 70.6
CiPaw.01G065900 Carya illinoinensis HOM05D004139 ORTHO05D004873 2.2e-13 78.2 47 78.7
SHI13391 Sapria himalayana HOM05D004139 ORTHO05D004873 3.7e-13 77.4 51 72.5
Hund27248 Selenicereus undatus HOM05D004139 ORTHO05D004873 4.9e-13 77.0 51 68.6
unitig_0.g2768 Utricularia gibba HOM05D004139 ORTHO05D004873 4.9e-13 77.0 51 66.7
EL10Ac4g08914 Beta vulgaris HOM05D000251 ORTHO05D004873 1.1e-12 75.9 47 74.5
CDE11G0755 Ceratophyllum demersum HOM05D004139 ORTHO05D004873 1.8e-12 75.1 51 68.6
HPP92_003462 Vanilla planifolia HOM05D004139 ORTHO05D004873 5.4e-12 73.6 51 68.6
EL10Ac3g06780 Beta vulgaris HOM05D004139 ORTHO05D004873 7.0e-12 73.2 51 66.7
AagrBONN_evm.TU.Sc2ySwM_117.2892 Anthoceros agrestis HOM05D004139 ORTHO05D004873 3.9e-10 67.4 49 59.2
Pp3c8_4660 Physcomitrium patens HOM05D004139 ORTHO05D004873 3.9e-10 67.4 51 56.9
SMO259G0050 Selaginella moellendorffii HOM05D004139 ORTHO05D004873 5.0e-10 67.0 51 52.9
Ca_07939_v3 Cicer arietinum L. HOM05D004139 ORTHO05D004873 4.3e-09 63.9 51 68.6
Pp3c9_22880 Physcomitrium patens HOM05D004139 ORTHO05D004873 4.3e-09 63.9 51 56.9
Pp3c15_25330 Physcomitrium patens HOM05D004139 ORTHO05D004873 5.6e-09 63.5 51 58.8
Mapoly0077s0060 Marchantia polymorpha HOM05D004139 ORTHO05D004873 2.8e-08 61.2 50 52.0
PSO591G0166 Papaver somniferum HOM05D004045 ORTHO05D004923 3.6e-08 60.8 52 61.5
Sabra14G0065100 Salix brachista HOM05D004139 ORTHO05D004873 6.1e-08 60.1 51 64.7
Pp3c3_30270 Physcomitrium patens HOM05D004139 ORTHO05D004873 1.0e-07 59.3 51 49.0


User provided reference genes

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