Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0358061 Rosa chinensis HOM05D004139 ORTHO05D004873 3.5e-90 335.1 190 100.0
RcHm_v2.0_Chr1g0357891 Rosa chinensis HOM05D005133 ORTHO05D006685 2.0e-77 292.7 156 94.2
RcHm_v2.0_Chr1g0358101 Rosa chinensis HOM05D004139 ORTHO05D004873 2.2e-76 289.3 156 93.6
RcHm_v2.0_Chr1g0357601 Rosa chinensis HOM05D004139 ORTHO05D004873 7.3e-64 247.7 134 94.8
FvH4_7g15180 Fragaria vesca HOM05D004139 ORTHO05D004873 6.2e-63 244.6 134 94.0
FAN03G2760 Fragaria x ananassa HOM05D004139 ORTHO05D004873 6.2e-63 244.6 134 94.0
FAN06G0792 Fragaria x ananassa HOM05D004139 ORTHO05D004873 6.2e-63 244.6 134 94.0
FAN06G4247 Fragaria x ananassa HOM05D004139 ORTHO05D004873 6.2e-63 244.6 134 94.0
FAN10G1735 Fragaria x ananassa HOM05D004139 ORTHO05D004873 6.2e-63 244.6 134 94.0
FAN10G1927 Fragaria x ananassa HOM05D004139 ORTHO05D004873 1.1e-62 243.8 134 94.0
FAN01G2783 Fragaria x ananassa HOM05D004139 ORTHO05D004873 3.4e-61 238.8 134 92.5
MD07G1132400 Malus domestica HOM05D004139 ORTHO05D004873 2.9e-60 235.7 134 91.0
RcHm_v2.0_Chr1g0358141 Rosa chinensis HOM05D004139 ORTHO05D004873 6.4e-60 234.6 137 91.2
RcHm_v2.0_Chr1g0357951 Rosa chinensis HOM05D004139 ORTHO05D004873 8.4e-60 234.2 134 91.0
MD01G1070100 Malus domestica HOM05D004139 ORTHO05D004873 1.7e-57 226.5 134 88.1
QL04p055168 Quercus lobata HOM05D004139 ORTHO05D004873 8.7e-57 224.2 134 85.8
CiPaw.02G034000 Carya illinoinensis HOM05D004139 ORTHO05D004873 1.1e-56 223.8 134 84.3
Dinv43858 Davidia involucrata HOM05D004139 ORTHO05D004873 4.3e-56 221.9 134 84.3
CiPaw.01G065900 Carya illinoinensis HOM05D004139 ORTHO05D004873 5.6e-56 221.5 134 84.3
Cfa003879 Carpinus fangiana HOM05D004139 ORTHO05D004873 7.3e-56 221.1 134 83.6
Haze_15555 Corylus avellana HOM05D004139 ORTHO05D004873 1.6e-55 219.9 134 82.8
Prupe.2G176300 Prunus persica HOM05D004139 ORTHO05D004873 1.6e-55 219.9 125 89.6
Sabra14G0065100 Salix brachista HOM05D004139 ORTHO05D004873 1.6e-55 219.9 134 81.3
CANSAT56G2748 Cannabis sativa HOM05D004139 ORTHO05D004873 2.8e-55 219.2 134 83.6
TWI59G0388 Tripterygium wilfordii HOM05D004139 ORTHO05D004873 1.1e-54 217.2 134 81.3
Eucgr.D02321 Eucalyptus grandis HOM05D004139 ORTHO05D004873 3.1e-54 215.7 134 79.9
Manes.01G252900 Manihot esculenta HOM05D004139 ORTHO05D004873 3.1e-54 215.7 134 82.1
Dinv32515 Davidia involucrata HOM05D004139 ORTHO05D004873 6.9e-54 214.5 134 81.3
Manes.05G030100 Manihot esculenta HOM05D004139 ORTHO05D004873 6.9e-54 214.5 134 81.3
Actinidia10064 Actinidia chinensis HOM05D004139 ORTHO05D004873 2.6e-53 212.6 134 79.1
COL.COLO4_12769 Corchorus olitorius HOM05D004139 ORTHO05D004873 9.9e-53 210.7 134 81.3
Oeu054345.1 Olea europaea HOM05D004139 ORTHO05D004873 9.9e-53 210.7 134 78.4
Cpa.g.sc184.28 Carica papaya HOM05D004139 ORTHO05D004873 1.3e-52 210.3 134 80.6
Atru.chr5.554 Acer truncatum HOM05D004139 ORTHO05D004873 2.2e-52 209.5 134 81.3
Potri.014G089400 Populus trichocarpa HOM05D004139 ORTHO05D004873 2.9e-52 209.1 134 79.9
Thecc.01G353300 Theobroma cacao HOM05D004139 ORTHO05D004873 6.4e-52 208.0 134 80.6
THA.LOC104801394 Tarenaya hassleriana HOM05D004139 ORTHO05D004873 1.1e-51 207.2 134 76.9
CSS0009771 Camellia sinensis var. sinensis HOM05D004139 ORTHO05D004873 1.4e-51 206.8 134 79.1
Potri.002G163200 Populus trichocarpa HOM05D004139 ORTHO05D004873 2.4e-51 206.1 134 77.6
Rhsim07G0011100 Rhododendron simsii HOM05D004139 ORTHO05D004873 2.4e-51 206.1 134 79.1
Duzib133G0727 Durio zibethinus HOM05D004139 ORTHO05D004873 3.2e-51 205.7 134 79.1
vmacro13237 Vaccinium macrocarpon HOM05D004139 ORTHO05D004873 7.1e-51 204.5 134 77.6
AT1G01510 Arabidopsis thaliana HOM05D004139 ORTHO05D004873 1.6e-50 203.4 134 75.4
AL1G10900 Arabidopsis lyrata HOM05D004139 ORTHO05D004873 2.1e-50 203.0 134 75.4
Gohir.D11G096700 Gossypium hirsutum HOM05D004139 ORTHO05D004873 4.6e-50 201.8 134 77.6
Gorai.007G103000 Gossypium raimondii HOM05D004139 ORTHO05D004873 4.6e-50 201.8 134 77.6
Sopen01g038830 Solanum pennellii HOM05D004139 ORTHO05D004873 4.6e-50 201.8 134 77.6
Duzib138G1274 Durio zibethinus HOM05D004139 ORTHO05D004873 6.0e-50 201.4 134 76.9
Oeu018961.1 Olea europaea HOM05D004139 ORTHO05D004873 6.0e-50 201.4 134 76.1
CsaV3_3G008650 Cucumis sativus L. HOM05D004139 ORTHO05D004873 7.9e-50 201.1 134 74.6
PGSC0003DMG400000190 Solanum tuberosum HOM05D004139 ORTHO05D004873 7.9e-50 201.1 134 77.6
Aa31LG1G10760 Aethionema arabicum HOM05D004139 ORTHO05D004873 1.0e-49 200.7 134 73.9
MELO3C006085.2 Cucumis melo HOM05D004139 ORTHO05D004873 1.0e-49 200.7 134 73.9
Gohir.A08G132500 Gossypium hirsutum HOM05D004139 ORTHO05D004873 1.0e-49 200.7 134 77.6
Gohir.A11G091900 Gossypium hirsutum HOM05D004139 ORTHO05D004873 1.3e-49 200.3 134 76.9
Actinidia20155 Actinidia chinensis HOM05D004139 ORTHO05D004873 1.7e-49 199.9 135 75.6
ClCG05G001290 Citrullus lanatus HOM05D004139 ORTHO05D004873 1.7e-49 199.9 134 73.9
Sp1g00800 Schrenkiella parvula HOM05D004139 ORTHO05D004873 1.7e-49 199.9 134 73.9
Solyc01g095040.3 Solanum lycopersicum HOM05D004139 ORTHO05D004873 1.7e-49 199.9 134 76.9
CARHR000860 Cardamine hirsuta HOM05D004139 ORTHO05D004873 3.0e-49 199.1 134 73.9
PGR031G0269 Punica granatum HOM05D004139 ORTHO05D004873 3.0e-49 199.1 134 76.9
PSO478G1271 Papaver somniferum HOM05D004139 ORTHO05D004873 3.9e-49 198.7 134 74.6
Carub.0001s0073 Capsella rubella HOM05D004139 ORTHO05D004873 6.6e-49 198.0 135 74.1
Peaxi162Scf00020g01226 Petunia axillaris HOM05D004139 ORTHO05D004873 6.6e-49 198.0 134 75.4
Sed0003876 Sechium edule HOM05D004139 ORTHO05D004873 1.5e-48 196.8 134 73.1
CAN.G78.121 Capsicum annuum HOM05D004139 ORTHO05D004873 1.9e-48 196.4 134 74.6
Gohir.D08G153900 Gossypium hirsutum HOM05D004139 ORTHO05D004873 1.9e-48 196.4 134 76.1
Gorai.004G159800 Gossypium raimondii HOM05D004139 ORTHO05D004873 1.9e-48 196.4 134 76.1
Hma1.2p1_0623F.1_g191015 Hydrangea macrophylla HOM05D004139 ORTHO05D004873 1.9e-48 196.4 131 75.6
Glyma.09G255200 Glycine max HOM05D004139 ORTHO05D004873 4.3e-48 195.3 134 75.4
Nn6g32432 Nelumbo nucifera HOM05D004139 ORTHO05D004873 5.6e-48 194.9 134 73.1
VMungo1383G0046 Vigna mungo HOM05D004139 ORTHO05D004873 7.3e-48 194.5 134 76.9
Glyma.18G237800 Glycine max HOM05D004139 ORTHO05D004873 1.3e-47 193.7 134 75.4
Phvul.008G058900 Phaseolus vulgaris HOM05D004139 ORTHO05D004873 1.3e-47 193.7 134 76.1
MSTRG.4838 Avicennia marina HOM05D004139 ORTHO05D004873 2.1e-47 193.0 135 72.6
DCAR_008636 Daucus carota HOM05D004139 ORTHO05D004873 2.1e-47 193.0 134 75.4
Lalb_Chr19g0126891 Lupinus albus HOM05D004139 ORTHO05D004873 2.1e-47 193.0 134 75.4
MSTRG.28234 Avicennia marina HOM05D004139 ORTHO05D004873 2.8e-47 192.6 134 72.4
PSO782G2833 Papaver somniferum HOM05D004139 ORTHO05D004873 3.6e-47 192.2 134 72.4
BcaB03g13589 Brassica carinata HOM05D004139 ORTHO05D004873 4.8e-47 191.8 134 70.1
A10p00480 Brassica napus HOM05D004139 ORTHO05D004873 4.8e-47 191.8 134 70.1
C05p00510 Brassica napus HOM05D004139 ORTHO05D004873 4.8e-47 191.8 134 70.1
BolC5t28840H Brassica oleracea HOM05D004139 ORTHO05D004873 4.8e-47 191.8 134 70.1
Nitab4.5_0022943g0010 Nicotiana tabacum HOM05D004139 ORTHO05D004873 4.8e-47 191.8 157 66.2
Lalb_Chr03g0038301 Lupinus albus HOM05D004139 ORTHO05D004873 6.2e-47 191.4 134 73.9
MSTRG.17294 Avicennia marina HOM05D004139 ORTHO05D004873 8.1e-47 191.0 134 70.1
Hma1.2p1_0627F.1_g191690 Hydrangea macrophylla HOM05D004139 ORTHO05D004873 1.1e-46 190.7 130 74.6
arahy.Tifrunner.gnm1.ann1.Y78NPN Arachis hypogaea HOM05D004139 ORTHO05D004873 1.4e-46 190.3 134 73.9
arahy.Tifrunner.gnm1.ann1.G1BLE5 Arachis hypogaea HOM05D004139 ORTHO05D004873 1.8e-46 189.9 134 73.9
TAR636G3175 Trochodendron aralioides HOM05D004139 ORTHO05D004873 1.8e-46 189.9 134 73.9
Lj1g0024287 Lotus japonicus HOM05D004139 ORTHO05D004873 2.4e-46 189.5 134 73.9
BraA10t42327Z Brassica rapa HOM05D004139 ORTHO05D004873 3.1e-46 189.1 134 68.7
Ciclev10019285m.g Citrus clementina HOM05D004139 ORTHO05D004873 3.1e-46 189.1 137 74.5
TAR629G2568 Trochodendron aralioides HOM05D004139 ORTHO05D004873 3.1e-46 189.1 134 74.6
SalBow5G4419 Salvia bowleyana HOM05D004139 ORTHO05D004873 2.6e-45 186.0 134 70.9
Cc02_g38470 Coffea canephora HOM05D004139 ORTHO05D004873 3.4e-45 185.7 129 72.9
Lj9A588G64 Lonicera japonica HOM05D004139 ORTHO05D004873 5.8e-45 184.9 135 71.9
SalBow3G2657 Salvia bowleyana HOM05D004139 ORTHO05D004873 5.8e-45 184.9 135 72.6
Aqoxy7G00189 Aquilegia oxysepala HOM05D004139 ORTHO05D004873 1.3e-44 183.7 134 70.1
EL10Ac1g00363 Beta vulgaris HOM05D004139 ORTHO05D004873 1.3e-44 183.7 134 71.6
Thhalv10007060m.g Eutrema salsugineum HOM05D004139 ORTHO05D004873 1.3e-44 183.7 134 69.4
Sabra02G0147300 Salix brachista HOM05D004139 ORTHO05D004873 3.8e-44 182.2 181 56.9
SalBow5G0787 Salvia bowleyana HOM05D004139 ORTHO05D004873 3.8e-44 182.2 134 70.1
Medtr7g078990 Medicago truncatula HOM05D004139 ORTHO05D004873 4.9e-44 181.8 134 71.6
AUR62004405 Chenopodium quinoa HOM05D004139 ORTHO05D004873 6.4e-44 181.4 134 71.6
Ah.05g180200 Amaranthus hybridus HOM05D004139 ORTHO05D004873 8.4e-44 181.0 134 70.9
ECA236G4877 Erigeron canadensis HOM05D004139 ORTHO05D004873 8.4e-44 181.0 135 71.1
AUR62022611 Chenopodium quinoa HOM05D004139 ORTHO05D004873 1.1e-43 180.6 134 70.9
TPR.G22297 Trifolium pratense HOM05D004139 ORTHO05D004873 1.1e-43 180.6 134 71.6
HanXRQChr06g0170301 Helianthus annuus HOM05D004139 ORTHO05D004873 2.4e-43 179.5 134 69.4
Nn1g01661 Nelumbo nucifera HOM05D004139 ORTHO05D004873 2.4e-43 179.5 134 70.1
Ca_07939_v3 Cicer arietinum L. HOM05D004139 ORTHO05D004873 9.3e-43 177.6 134 70.1
Psat3g106200 Pisum sativum HOM05D004139 ORTHO05D004873 2.1e-42 176.4 134 68.7
Sed0010543 Sechium edule HOM05D004139 ORTHO05D004873 2.1e-42 176.4 123 72.4
Nitab4.5_0000915g0160 Nicotiana tabacum HOM05D004139 ORTHO05D004873 3.5e-42 175.6 167 60.5
Migut.N01462 Erythranthe guttata HOM05D004139 ORTHO05D004873 1.0e-41 174.1 134 66.4
SGA_v2.0_scaffold43G16391 Striga asiatica HOM05D004139 ORTHO05D004873 1.0e-41 174.1 134 67.2
Hund27248 Selenicereus undatus HOM05D004139 ORTHO05D004873 1.3e-41 173.7 134 69.4
Sc23g0002600 Simmondsia chinensis HOM05D004139 ORTHO05D004873 1.3e-41 173.7 134 67.9
unitig_748.g7106 Utricularia gibba HOM05D004139 ORTHO05D004873 8.7e-41 171.0 134 64.2
ATR0661G136 Amborella trichopoda HOM05D004139 ORTHO05D004873 2.5e-40 169.5 135 67.4
HanXRQChr04g0121381 Helianthus annuus HOM05D004139 ORTHO05D004873 4.3e-40 168.7 134 65.7
MBI04_g15071_MAGBIO Magnolia biondii HOM05D004139 ORTHO05D004873 4.3e-40 168.7 135 68.9
CDE11G0755 Ceratophyllum demersum HOM05D004139 ORTHO05D004873 1.2e-37 160.6 133 64.7
Lsat_1_v5_gn_7_3821 Lactuca sativa HOM05D004139 ORTHO05D004873 4.9e-36 155.2 131 64.1
GSVIVG01026958001 Vitis vinifera HOM05D004139 ORTHO05D004873 1.1e-35 154.1 92 84.8
CDE02G4181 Ceratophyllum demersum HOM05D004139 ORTHO05D004873 1.4e-35 153.7 133 63.9
Os03g0126100 Oryza sativa ssp. japonica HOM05D004139 ORTHO05D004873 2.5e-35 152.9 136 61.8
SEGI_14155 Sequoiadendron giganteum HOM05D004139 ORTHO05D004873 2.5e-35 152.9 138 57.2
Zm00001eb001910 Zea mays HOM05D004139 ORTHO05D004873 1.3e-33 147.1 136 61.0
Os10g0533000 Oryza sativa ssp. japonica HOM05D004139 ORTHO05D004873 3.9e-33 145.6 134 59.7
Zm00001eb021820 Zea mays HOM05D004139 ORTHO05D004873 8.7e-33 144.4 128 59.4
HPP92_003462 Vanilla planifolia HOM05D004139 ORTHO05D004873 5.9e-29 131.7 121 57.0
SHI13389 Sapria himalayana HOM05D004139 ORTHO05D004873 2.9e-28 129.4 110 60.9
Hma1.2p1_2961F.1_g330910 Hydrangea macrophylla HOM05D004139 ORTHO05D004873 3.5e-26 122.5 88 71.6
SGA_v2.0_scaffold11G05679 Striga asiatica HOM05D004139 ORTHO05D004873 8.7e-25 117.9 136 50.0
SMO259G0050 Selaginella moellendorffii HOM05D004139 ORTHO05D004873 1.5e-24 117.1 133 45.9
Mapoly0077s0060 Marchantia polymorpha HOM05D004139 ORTHO05D004873 3.3e-24 115.9 139 46.8
FAN06G0709 Fragaria x ananassa HOM05D004139 ORTHO05D000018 2.8e-23 112.8 67 82.1
AagrBONN_evm.TU.Sc2ySwM_117.2892 Anthoceros agrestis HOM05D004139 ORTHO05D004873 8.2e-23 111.3 140 48.6
Pp3c9_22880 Physcomitrium patens HOM05D004139 ORTHO05D004873 4.5e-21 105.5 135 44.4
RcHm_v2.0_Chr1g0357991 Rosa chinensis HOM05D004139 ORTHO05D004873 5.9e-21 105.1 59 96.6
Pp3c15_25330 Physcomitrium patens HOM05D004139 ORTHO05D004873 2.2e-20 103.2 135 44.4
unitig_0.g2768 Utricularia gibba HOM05D004139 ORTHO05D004873 2.5e-19 99.8 104 49.0
RcHm_v2.0_Chr1g0357981 Rosa chinensis HOM05D004139 ORTHO05D004873 1.4e-17 94.0 49 93.9
Hund16674 Selenicereus undatus HOM05D004139 ORTHO05D004873 1.0e-09 67.8 134 38.1


User provided reference genes

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