Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0358051 Rosa chinensis HOM05D005133 ORTHO05D006685 1.3e-191 672.9 348 100.0
RcHm_v2.0_Chr1g0358181 Rosa chinensis HOM05D005133 ORTHO05D006685 8.9e-100 367.9 364 62.6
FAN10G2939 Fragaria x ananassa HOM05D005133 ORTHO05D006685 1.0e-95 354.4 357 60.2
FAN10G2725 Fragaria x ananassa HOM05D005133 ORTHO05D006685 2.3e-95 353.2 365 60.3
FAN06G1776 Fragaria x ananassa HOM05D005133 ORTHO05D006685 3.9e-95 352.4 364 60.2
FvH4_7g15540 Fragaria vesca HOM05D005133 ORTHO05D006685 6.6e-95 351.7 364 60.2
FAN06G1340 Fragaria x ananassa HOM05D005133 ORTHO05D006685 2.3e-92 343.2 356 59.8
Prupe.2G179100 Prunus persica HOM05D005133 ORTHO05D006685 2.1e-85 320.1 367 55.6
MD07G1130200 Malus domestica HOM05D005133 ORTHO05D006685 6.2e-85 318.5 362 53.9
RcHm_v2.0_Chr1g0357891 Rosa chinensis HOM05D005133 ORTHO05D006685 8.1e-85 318.2 177 96.6
Gohir.D07G145800 Gossypium hirsutum HOM05D005133 ORTHO05D006685 1.6e-77 293.9 349 52.7
Gorai.001G158000 Gossypium raimondii HOM05D005133 ORTHO05D006685 1.6e-77 293.9 349 52.7
GSVIVG01027010001 Vitis vinifera HOM05D005133 ORTHO05D006685 8.1e-77 291.6 357 51.0
Cpa.g.sc11.53 Carica papaya HOM05D005133 ORTHO05D006685 9.9e-75 284.6 355 51.0
Ciclev10020434m.g Citrus clementina HOM05D005133 ORTHO05D006685 2.9e-74 283.1 360 48.6
Atru.chr5.593 Acer truncatum HOM05D005133 ORTHO05D006685 6.4e-74 282.0 358 50.6
Peaxi162Scf00020g01713 Petunia axillaris HOM05D005133 ORTHO05D006685 1.2e-72 277.7 355 49.6
Lj7C506T5 Lonicera japonica HOM05D005133 ORTHO05D006685 2.1e-72 276.9 353 49.6
COL.COLO4_06373 Corchorus olitorius HOM05D005133 ORTHO05D006685 6.0e-72 275.4 337 51.3
Thecc.01G351000 Theobroma cacao HOM05D005133 ORTHO05D006685 6.0e-72 275.4 340 50.6
Dinv43872 Davidia involucrata HOM05D005133 ORTHO05D006685 1.0e-71 274.6 363 48.2
CiPaw.02G036200 Carya illinoinensis HOM05D005133 ORTHO05D006685 1.7e-71 273.9 356 49.2
Duzib133G0222 Durio zibethinus HOM05D005133 ORTHO05D006685 5.1e-71 272.3 348 49.4
Potri.014G091400 Populus trichocarpa HOM05D005133 ORTHO05D006685 5.1e-71 272.3 349 51.0
Cfa003860 Carpinus fangiana HOM05D005133 ORTHO05D006685 1.6e-69 267.3 362 47.2
DCAR_025229 Daucus carota HOM05D005133 ORTHO05D006685 2.8e-69 266.5 362 48.9
arahy.Tifrunner.gnm1.ann1.YZ0HQS Arachis hypogaea HOM05D005133 ORTHO05D006685 1.1e-68 264.6 359 46.0
Cfa007878 Carpinus fangiana HOM05D005133 ORTHO05D006685 1.1e-68 264.6 360 47.5
Actinidia20170 Actinidia chinensis HOM05D005133 ORTHO05D006685 1.4e-68 264.2 364 47.8
TAR375G0148 Trochodendron aralioides HOM05D005133 ORTHO05D006685 1.4e-68 264.2 366 46.7
Manes.01G251600 Manihot esculenta HOM05D005133 ORTHO05D006685 5.3e-68 262.3 356 48.3
arahy.Tifrunner.gnm1.ann1.ZNWN3Y Arachis hypogaea HOM05D005133 ORTHO05D006685 1.2e-67 261.2 359 45.4
Solyc01g095230.4 Solanum lycopersicum HOM05D005133 ORTHO05D006685 1.2e-67 261.2 355 49.0
Haze_14198 Corylus avellana HOM05D005133 ORTHO05D006685 2.6e-67 260.0 360 47.5
PGR031G0061 Punica granatum HOM05D005133 ORTHO05D006685 2.6e-67 260.0 357 47.9
Sopen01g039020 Solanum pennellii HOM05D005133 ORTHO05D006685 2.6e-67 260.0 350 50.0
Migut.B01807 Erythranthe guttata HOM05D005133 ORTHO05D006685 3.4e-67 259.6 345 47.2
CSS0040148 Camellia sinensis var. sinensis HOM05D005133 ORTHO05D006685 5.8e-67 258.8 357 46.5
Nitab4.5_0003501g0010 Nicotiana tabacum HOM05D005133 ORTHO05D006685 5.8e-67 258.8 354 47.5
PSO135G0656 Papaver somniferum HOM05D005133 ORTHO05D006685 7.6e-67 258.5 338 48.5
SalBow1G3823 Salvia bowleyana HOM05D005133 ORTHO05D006685 9.9e-67 258.1 345 47.5
arahy.Tifrunner.gnm1.ann1.JRPH7J Arachis hypogaea HOM05D005133 ORTHO05D006685 1.7e-66 257.3 359 44.8
Dinv32531 Davidia involucrata HOM05D005133 ORTHO05D006685 2.2e-66 256.9 370 46.8
Glyma.12G050200 Glycine max HOM05D005133 ORTHO05D006685 2.2e-66 256.9 360 46.1
SGA_v2.0_scaffold95G28800 Striga asiatica HOM05D003721 ORTHO05D004303 4.9e-66 255.8 355 46.2
Aqoxy3G00498 Aquilegia oxysepala HOM05D005133 ORTHO05D006685 6.4e-66 255.4 337 48.4
Migut.H02011 Erythranthe guttata HOM05D005133 ORTHO05D006685 6.4e-66 255.4 340 46.8
Cc06_g17440 Coffea canephora HOM05D005133 ORTHO05D006685 8.4e-66 255.0 354 45.5
Psat7g208960 Pisum sativum HOM05D005133 ORTHO05D006685 1.1e-65 254.6 361 46.0
Sed0023612 Sechium edule HOM05D005133 ORTHO05D006685 1.4e-65 254.2 360 45.0
CSS0009332 Camellia sinensis var. sinensis HOM05D005133 ORTHO05D006685 1.9e-65 253.8 355 46.2
TWI34G1432 Tripterygium wilfordii HOM05D005133 ORTHO05D006685 4.2e-65 252.7 343 45.5
PGSC0003DMG401000198 Solanum tuberosum HOM05D005133 ORTHO05D006685 5.4e-65 252.3 350 47.1
ClCG05G014200 Citrullus lanatus HOM05D005133 ORTHO05D006685 7.1e-65 251.9 373 44.5
Migut.B01808 Erythranthe guttata HOM05D005133 ORTHO05D006685 9.3e-65 251.5 340 46.5
HanXRQChr17g0562291 Helianthus annuus HOM05D005133 ORTHO05D006685 2.1e-64 250.4 344 46.2
Rhsim07G0009300 Rhododendron simsii HOM05D005133 ORTHO05D006685 2.1e-64 250.4 340 45.6
MSTRG.20869 Avicennia marina HOM05D005133 ORTHO05D006685 2.7e-64 250.0 343 45.8
SalBow3G2243 Salvia bowleyana HOM05D005133 ORTHO05D006685 4.6e-64 249.2 384 44.3
Phvul.011G052300 Phaseolus vulgaris HOM05D005133 ORTHO05D006685 1.0e-63 248.1 359 43.7
TPR.G34211 Trifolium pratense HOM05D005133 ORTHO05D006685 1.0e-63 248.1 362 44.8
MELO3C006074.2 Cucumis melo HOM05D005133 ORTHO05D006685 2.3e-63 246.9 373 45.3
Sabra14G0066300 Salix brachista HOM05D005133 ORTHO05D006685 2.3e-63 246.9 385 45.2
Lalb_Chr19g0138411 Lupinus albus HOM05D005133 ORTHO05D006685 3.0e-63 246.5 365 43.3
LjContig00310g0005517 Lotus japonicus HOM05D005133 ORTHO05D006685 3.9e-63 246.1 360 44.2
VMungo1127G1104 Vigna mungo HOM05D005133 ORTHO05D006685 6.6e-63 245.4 359 43.7
Oeu015214.1 Olea europaea HOM05D005133 ORTHO05D006685 1.5e-62 244.2 430 41.4
CAN.G78.137 Capsicum annuum HOM05D005133 ORTHO05D006685 5.6e-62 242.3 346 46.5
CsaV3_3G008530 Cucumis sativus L. HOM05D005133 ORTHO05D006685 1.3e-61 241.1 373 43.7
Nn7g37315 Nelumbo nucifera HOM05D005133 ORTHO05D006685 3.6e-61 239.6 348 43.7
QL07p038619 Quercus lobata HOM05D005133 ORTHO05D006685 3.6e-61 239.6 358 44.4
Ca_20805_v3 Cicer arietinum L. HOM05D005133 ORTHO05D006685 4.0e-60 236.1 353 43.9
unitig_0.g335 Utricularia gibba HOM05D005133 ORTHO05D006685 9.0e-60 235.0 342 45.6
Aa31LG1G27580 Aethionema arabicum HOM05D005133 ORTHO05D006685 1.2e-59 234.6 353 44.2
Eucgr.J01063 Eucalyptus grandis HOM05D005133 ORTHO05D006685 1.5e-59 234.2 332 45.2
EL10Ac1g00344 Beta vulgaris HOM05D005133 ORTHO05D006685 3.4e-59 233.0 346 43.9
ATR0626G352 Amborella trichopoda HOM05D005133 ORTHO05D006685 9.9e-59 231.5 335 45.1
CSS0000155 Camellia sinensis var. sinensis HOM05D005133 ORTHO05D006685 1.3e-58 231.1 344 45.6
Haze_15581 Corylus avellana HOM05D005133 ORTHO05D006685 4.9e-58 229.2 354 43.8
THA.LOC104817324 Tarenaya hassleriana HOM05D005133 ORTHO05D006685 6.4e-58 228.8 351 43.3
CANSAT01G0674 Cannabis sativa HOM05D005133 ORTHO05D006685 1.1e-57 228.0 334 47.9
Haze_15576 Corylus avellana HOM05D005133 ORTHO05D006685 4.2e-57 226.1 369 42.3
BcaC02g12500 Brassica carinata HOM05D005133 ORTHO05D006685 2.1e-56 223.8 354 42.1
Sc01g0003150 Simmondsia chinensis HOM05D005133 ORTHO05D006685 2.1e-56 223.8 365 44.1
AL4G45460 Arabidopsis lyrata HOM05D005133 ORTHO05D006685 6.0e-56 222.2 357 43.7
C04p01840 Brassica napus HOM05D005133 ORTHO05D006685 6.0e-56 222.2 355 42.0
Lsat_1_v5_gn_4_34900 Lactuca sativa HOM05D005133 ORTHO05D006685 1.8e-55 220.7 352 40.9
Medtr4g068010 Medicago truncatula HOM05D005133 ORTHO05D006685 1.8e-55 220.7 359 41.2
BcaC02g12707 Brassica carinata HOM05D005133 ORTHO05D006685 2.3e-55 220.3 350 42.6
Sp5g32810 Schrenkiella parvula HOM05D005133 ORTHO05D006685 3.0e-55 219.9 356 42.7
vmacro20884 Vaccinium macrocarpon HOM05D005133 ORTHO05D006685 3.0e-55 219.9 384 39.8
ECA234G4221 Erigeron canadensis HOM05D005133 ORTHO05D006685 3.9e-55 219.5 360 42.2
AUR62022626 Chenopodium quinoa HOM05D005133 ORTHO05D006685 2.1e-53 213.8 341 43.7
Zm00001eb339090 Zea mays HOM05D005133 ORTHO05D006685 4.8e-53 212.6 351 43.0
BraA05t19159Z Brassica rapa HOM05D005133 ORTHO05D006685 1.1e-52 211.5 353 41.6
Hund27238 Selenicereus undatus HOM05D005133 ORTHO05D006685 2.4e-52 210.3 362 41.2
A05p01630 Brassica napus HOM05D005133 ORTHO05D006685 3.1e-52 209.9 353 41.4
RcHm_v2.0_Chr1g0358091 Rosa chinensis HOM05D005133 ORTHO05D006685 3.1e-52 209.9 302 48.0
Thhalv10028732m.g Eutrema salsugineum HOM05D005133 ORTHO05D006685 1.5e-51 207.6 326 42.6
Carub.0004s2888 Capsella rubella HOM05D005133 ORTHO05D006685 2.6e-51 206.8 352 39.8
Os01g0226500 Oryza sativa ssp. japonica HOM05D005133 ORTHO05D006685 3.4e-51 206.5 334 41.6
CARHR141470 Cardamine hirsuta HOM05D005133 ORTHO05D006685 4.5e-51 206.1 329 42.6
Gohir.A07G140500 Gossypium hirsutum HOM05D005133 ORTHO05D006685 1.0e-50 204.9 310 46.1
Nitab4.5_0000915g0010 Nicotiana tabacum HOM05D005133 ORTHO05D006685 1.0e-50 204.9 319 44.2
vmacro13220 Vaccinium macrocarpon HOM05D005133 ORTHO05D006685 1.7e-50 204.1 324 43.5
Thhalv10001493m.g Eutrema salsugineum HOM05D005133 ORTHO05D006685 3.8e-50 203.0 358 39.9
vmacro22850 Vaccinium macrocarpon HOM05D005133 ORTHO05D006685 2.3e-47 193.7 354 39.3
AUR62004420 Chenopodium quinoa HOM05D005133 ORTHO05D006685 5.7e-46 189.1 339 41.0
Pp3c4_26280 Physcomitrium patens HOM05D005133 ORTHO05D006685 6.5e-42 175.6 318 38.4
MBI16_g41624_MAGBIO Magnolia biondii HOM05D005133 ORTHO05D006685 1.5e-38 164.5 316 39.2
PSO384G2230 Papaver somniferum HOM05D005133 ORTHO05D006685 4.3e-38 162.9 165 58.2
AT2G46200 Arabidopsis thaliana HOM05D005133 ORTHO05D006685 9.7e-38 161.8 314 40.4
HPP92_023966 Vanilla planifolia HOM05D005133 ORTHO05D006685 4.5e-35 152.9 157 58.0
Mapoly0001s0322 Marchantia polymorpha HOM05D005133 ORTHO05D006685 5.9e-35 152.5 323 36.2
arahy.Tifrunner.gnm1.ann1.Z00T6Z Arachis hypogaea HOM05D005133 ORTHO05D006685 2.1e-32 144.1 166 49.4
CDE09G0708 Ceratophyllum demersum HOM05D005133 ORTHO05D006685 7.9e-32 142.1 331 35.6
PSO478G1127 Papaver somniferum HOM05D005133 ORTHO05D006685 1.1e-30 138.3 158 55.1
Ah.05g180080 Amaranthus hybridus HOM05D005133 ORTHO05D006685 2.0e-30 137.5 354 34.2
FAN03G0151 Fragaria x ananassa HOM05D005133 ORTHO05D006685 2.2e-29 134.0 59 98.3
Zm00001eb201120 Zea mays HOM05D005133 ORTHO05D006685 6.1e-24 115.9 140 50.7
Zm00001eb407270 Zea mays HOM05D005133 ORTHO05D006685 6.1e-24 115.9 140 50.7
AagrBONN_evm.TU.Sc2ySwM_344.4499 Anthoceros agrestis HOM05D005133 ORTHO05D006685 1.4e-20 104.8 336 33.6
CBR_g45167 Chara braunii HOM05D005133 ORTHO05D006685 2.5e-17 94.0 55 67.3
SHI13349 Sapria himalayana HOM05D005133 ORTHO05D006685 4.7e-16 89.7 141 43.3
Gohir.A03G093200 Gossypium hirsutum HOM05D005133 ORTHO05D006685 8.8e-15 85.5 107 49.5
RcHm_v2.0_Chr1g0358101 Rosa chinensis HOM05D004139 ORTHO05D004873 2.6e-14 84.0 43 100.0
HanXRQChr04g0107751 Helianthus annuus HOM05D005133 ORTHO05D006685 3.7e-13 80.1 101 51.5
vmacro01745 Vaccinium macrocarpon HOM05D005133 ORTHO05D006685 8.2e-13 79.0 135 39.3
C04p01870 Brassica napus HOM05D005133 ORTHO05D006685 2.7e-11 73.9 39 71.8
Glyma.11G125567 Glycine max HOM05D005133 ORTHO05D006685 2.7e-08 63.9 73 43.8
SMO239G0112 Selaginella moellendorffii HOM05D005133 ORTHO05D006685 8.0e-08 62.4 143 34.3
AUR62025074 Chenopodium quinoa HOM05D005133 ORTHO05D006685 1.5e-06 58.2 66 54.5
SMO114G0022 Selaginella moellendorffii HOM05D005133 ORTHO05D006685 2.6e-06 57.4 83 43.4


User provided reference genes

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