Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0358041 Rosa chinensis HOM05D007741 ORTHO05D347005 3.7e-190 667.9 311 100.0
RcHm_v2.0_Chr4g0442201 Rosa chinensis HOM05D028330 ORTHO05D342349 6.1e-60 235.3 377 42.2
RcHm_v2.0_Chr4g0413331 Rosa chinensis HOM05D028330 ORTHO05D343215 1.4e-48 197.6 347 40.6
RcHm_v2.0_Chr5g0050261 Rosa chinensis HOM05D007741 ORTHO05D014215 5.6e-45 185.7 210 53.8
RcHm_v2.0_Chr1g0339901 Rosa chinensis HOM05D007741 ORTHO05D016318 7.1e-40 168.7 197 49.7
RcHm_v2.0_Chr2g0119361 Rosa chinensis HOM05D007741 ORTHO05D016318 7.1e-40 168.7 197 49.7
RcHm_v2.0_Chr4g0423141 Rosa chinensis HOM05D007741 ORTHO05D016318 4.7e-36 156.0 191 48.7
RcHm_v2.0_Chr1g0346381 Rosa chinensis HOM05D007741 ORTHO05D016318 1.1e-35 154.8 186 49.5
RcHm_v2.0_Chr7g0204591 Rosa chinensis HOM05D007741 ORTHO05D016318 1.5e-34 151.0 147 58.5
RcHm_v2.0_Chr1g0320181 Rosa chinensis HOM05D028330 ORTHO05D341788 1.4e-32 144.4 149 53.0
RcHm_v2.0_Chr1g0351211 Rosa chinensis HOM05D007741 ORTHO05D015647 3.6e-28 129.8 169 47.3
RcHm_v2.0_Chr6g0277431 Rosa chinensis HOM05D007741 ORTHO05D014215 8.1e-28 128.6 77 76.6
RcHm_v2.0_Chr6g0279711 Rosa chinensis HOM05D007741 ORTHO05D016318 2.4e-27 127.1 166 45.8
FAN12G2273 Fragaria x ananassa HOM05D007741 ORTHO05D209008 4.0e-27 126.3 138 51.4
RcHm_v2.0_Chr6g0312921 Rosa chinensis HOM05D007741 ORTHO05D014215 5.3e-27 125.9 76 76.3
RcHm_v2.0_Chr7g0213041 Rosa chinensis HOM05D007741 ORTHO05D014215 1.7e-22 110.9 70 74.3
RcHm_v2.0_Chr3g0465101 Rosa chinensis HOM05D007741 ORTHO05D342996 3.0e-22 110.2 372 34.1
RcHm_v2.0_Chr7g0201181 Rosa chinensis HOM05D007741 ORTHO05D014215 1.1e-21 108.2 70 74.3
RcHm_v2.0_Chr4g0422751 Rosa chinensis HOM05D007741 ORTHO05D016318 1.3e-20 104.8 131 48.1
FAN06G3290 Fragaria x ananassa HOM05D007741 ORTHO05D203466 8.1e-20 102.1 182 39.0
FAN14G3085 Fragaria x ananassa HOM05D007741 ORTHO05D201723 4.0e-19 99.8 271 32.1
FAN22G0864 Fragaria x ananassa HOM05D007741 ORTHO05D014215 4.0e-19 99.8 127 48.0
RcHm_v2.0_Chr7g0215471 Rosa chinensis HOM05D007741 ORTHO05D346134 6.9e-19 99.0 134 46.3
RcHm_v2.0_Chr4g0422711 Rosa chinensis HOM05D007741 ORTHO05D011461 9.0e-19 98.6 126 43.7
FAN13G2213 Fragaria x ananassa HOM05D007741 ORTHO05D208410 1.5e-18 97.8 195 36.9
FAN04G0311 Fragaria x ananassa HOM05D007741 ORTHO05D209742 2.6e-18 97.1 129 46.5
RcHm_v2.0_Chr4g0424711 Rosa chinensis HOM05D007741 ORTHO05D006912 2.6e-18 97.1 103 48.5
RcHm_v2.0_Chr4g0427731 Rosa chinensis HOM05D007741 ORTHO05D006912 2.6e-18 97.1 192 35.9
RcHm_v2.0_Chr6g0280951 Rosa chinensis HOM05D007761 ORTHO05D011461 3.4e-18 96.7 121 46.3
FAN15G0375 Fragaria x ananassa HOM05D007741 ORTHO05D014215 5.8e-18 95.9 116 48.3
FvH4_5g00140 Fragaria vesca HOM05D007761 ORTHO05D015647 9.9e-18 95.1 259 31.3
FAN10G2132 Fragaria x ananassa HOM05D007741 ORTHO05D204785 3.8e-17 93.2 99 51.5
FAN19G1218 Fragaria x ananassa HOM05D007741 ORTHO05D035834 4.9e-17 92.8 120 47.5
RcHm_v2.0_Chr2g0140171 Rosa chinensis HOM05D007741 ORTHO05D015647 4.9e-17 92.8 110 49.1
FAN27G3337 Fragaria x ananassa HOM05D007741 ORTHO05D016314 6.4e-17 92.4 119 51.3
RcHm_v2.0_Chr2g0150711 Rosa chinensis HOM05D007741 ORTHO05D343767 2.4e-16 90.5 163 37.4
FAN18G4008 Fragaria x ananassa HOM05D007741 ORTHO05D200570 4.2e-16 89.7 87 52.9
FAN09G4565 Fragaria x ananassa HOM05D007761 ORTHO05D015647 1.6e-15 87.8 150 37.3
FAN10G3035 Fragaria x ananassa HOM05D010166 ORTHO05D207531 2.1e-15 87.4 153 43.8
FAN17G1839 Fragaria x ananassa HOM05D010166 ORTHO05D204969 4.6e-15 86.3 144 45.1
FAN11G3088 Fragaria x ananassa HOM05D010166 ORTHO05D210407 6.0e-15 85.9 144 44.4
RcHm_v2.0_Chr1g0367541 Rosa chinensis HOM05D007741 ORTHO05D011083 6.0e-15 85.9 244 33.6
RcHm_v2.0_Chr3g0492151 Rosa chinensis HOM05D038236 ORTHO05D340897 6.0e-15 85.9 55 65.5
FAN08G0423 Fragaria x ananassa HOM05D007761 ORTHO05D207630 1.3e-14 84.7 181 34.8
FAN08G3184 Fragaria x ananassa HOM05D007761 ORTHO05D206550 1.3e-14 84.7 181 34.8
FAN24G0121 Fragaria x ananassa HOM05D007741 ORTHO05D208107 3.9e-14 83.2 116 47.4
FAN24G2207 Fragaria x ananassa HOM05D007761 ORTHO05D015647 5.1e-14 82.8 127 37.8
FAN21G0226 Fragaria x ananassa HOM05D007741 ORTHO05D208582 6.7e-14 82.4 114 43.0
FAN11G0182 Fragaria x ananassa HOM05D007741 ORTHO05D016318 8.7e-14 82.0 104 49.0
RcHm_v2.0_Chr2g0151251 Rosa chinensis HOM05D005636 ORTHO05D006912 1.5e-13 81.3 170 37.6
FAN01G0683 Fragaria x ananassa HOM05D007761 ORTHO05D011461 2.5e-13 80.5 110 43.6
FAN05G2149 Fragaria x ananassa HOM05D007741 ORTHO05D016318 2.5e-13 80.5 55 70.9
FAN10G3275 Fragaria x ananassa HOM05D007761 ORTHO05D011461 2.5e-13 80.5 110 43.6
FAN12G0192 Fragaria x ananassa HOM05D007761 ORTHO05D011461 2.5e-13 80.5 110 43.6
FAN25G1610 Fragaria x ananassa HOM05D007761 ORTHO05D011461 2.5e-13 80.5 110 43.6
FvH4_6g29890 Fragaria vesca HOM05D007741 ORTHO05D014215 4.3e-13 79.7 88 52.3
FAN16G2345 Fragaria x ananassa HOM05D007761 ORTHO05D022710 4.3e-13 79.7 162 37.0
RcHm_v2.0_Chr6g0295101 Rosa chinensis HOM05D007741 ORTHO05D035834 4.3e-13 79.7 124 41.1
FAN08G3144 Fragaria x ananassa HOM05D007761 ORTHO05D011461 5.6e-13 79.3 117 43.6
FAN11G1680 Fragaria x ananassa HOM05D007741 ORTHO05D204100 5.6e-13 79.3 108 46.3
FAN27G1171 Fragaria x ananassa HOM05D007761 ORTHO05D011083 5.6e-13 79.3 128 42.2
FAN28G2015 Fragaria x ananassa HOM05D010166 ORTHO05D205652 5.6e-13 79.3 122 44.3
FAN16G3080 Fragaria x ananassa HOM05D007761 ORTHO05D000537 9.6e-13 78.6 120 45.0
FAN22G1765 Fragaria x ananassa HOM05D007741 ORTHO05D016314 9.6e-13 78.6 81 55.6
RcHm_v2.0_Chr1g0330531 Rosa chinensis HOM05D007741 ORTHO05D011461 1.3e-12 78.2 92 43.5
FvH4_2g30030 Fragaria vesca HOM05D017632 ORTHO05D029434 2.8e-12 77.0 65 63.1
FAN02G2687 Fragaria x ananassa HOM05D007741 ORTHO05D211123 4.8e-12 76.3 111 45.0
FAN26G3015 Fragaria x ananassa HOM05D007741 ORTHO05D199990 4.8e-12 76.3 114 42.1
RcHm_v2.0_Chr5g0057351 Rosa chinensis HOM05D006059 ORTHO05D010613 4.8e-12 76.3 163 38.0
FAN04G2478 Fragaria x ananassa HOM05D007761 ORTHO05D011461 6.2e-12 75.9 103 44.7
FAN12G3955 Fragaria x ananassa HOM05D007761 ORTHO05D015647 8.1e-12 75.5 106 39.6
FAN20G2857 Fragaria x ananassa HOM05D017632 ORTHO05D029434 1.1e-11 75.1 52 69.2
FAN23G1385 Fragaria x ananassa HOM05D015953 ORTHO05D019200 1.1e-11 75.1 138 41.3
FAN27G1253 Fragaria x ananassa HOM05D007761 ORTHO05D011461 2.4e-11 73.9 85 49.4
FAN20G1840 Fragaria x ananassa HOM05D007741 ORTHO05D202158 3.1e-11 73.6 163 35.0
FAN05G5109 Fragaria x ananassa HOM05D007761 ORTHO05D011461 4.0e-11 73.2 93 44.1
FAN19G0161 Fragaria x ananassa HOM05D007741 ORTHO05D204998 4.0e-11 73.2 117 39.3
FAN07G1261 Fragaria x ananassa HOM05D007761 ORTHO05D011461 5.3e-11 72.8 123 41.5
FAN11G1752 Fragaria x ananassa HOM05D007741 ORTHO05D204122 9.0e-11 72.0 122 41.8
FAN06G3287 Fragaria x ananassa HOM05D007761 ORTHO05D011461 1.2e-10 71.6 78 48.7
RcHm_v2.0_Chr3g0459951 Rosa chinensis HOM05D007741 ORTHO05D342834 1.5e-10 71.2 121 38.8
FAN14G1493 Fragaria x ananassa HOM05D001253 ORTHO05D001086 2.0e-10 70.9 78 48.7
RcHm_v2.0_Chr4g0410721 Rosa chinensis HOM05D038236 ORTHO05D342381 2.0e-10 70.9 173 37.6
RcHm_v2.0_Chr6g0280101 Rosa chinensis HOM05D007741 ORTHO05D343715 2.0e-10 70.9 90 42.2
FAN18G4536 Fragaria x ananassa HOM05D007761 ORTHO05D015647 2.6e-10 70.5 74 51.4
FAN10G2127 Fragaria x ananassa HOM05D022609 ORTHO05D029410 7.6e-10 68.9 74 47.3
FAN08G0049 Fragaria x ananassa HOM05D007741 ORTHO05D210836 1.3e-09 68.2 187 34.8
FAN15G1618 Fragaria x ananassa HOM05D007761 ORTHO05D011461 1.3e-09 68.2 123 41.5
FAN13G3075 Fragaria x ananassa HOM05D001229 ORTHO05D001374 2.9e-09 67.0 83 44.6
FAN22G0676 Fragaria x ananassa HOM05D007741 ORTHO05D204708 3.8e-09 66.6 116 38.8
FAN22G2406 Fragaria x ananassa HOM05D007741 ORTHO05D210186 3.8e-09 66.6 116 38.8
FAN24G0486 Fragaria x ananassa HOM05D007761 ORTHO05D011461 3.8e-09 66.6 95 35.8
FAN06G2936 Fragaria x ananassa HOM05D007741 ORTHO05D203393 4.9e-09 66.2 134 36.6
FAN15G0652 Fragaria x ananassa HOM05D007741 ORTHO05D014215 8.4e-09 65.5 134 39.6
FAN01G0838 Fragaria x ananassa HOM05D008445 ORTHO05D011083 1.4e-08 64.7 218 31.7
FAN13G1293 Fragaria x ananassa HOM05D007741 ORTHO05D203552 1.4e-08 64.7 43 69.8
FAN22G1122 Fragaria x ananassa HOM05D007761 ORTHO05D011461 1.9e-08 64.3 122 42.6
FAN12G2570 Fragaria x ananassa HOM05D015068 ORTHO05D046416 2.5e-08 63.9 165 37.0
FAN16G1673 Fragaria x ananassa HOM05D007741 ORTHO05D035834 2.5e-08 63.9 104 37.5
FAN23G2308 Fragaria x ananassa HOM05D007741 ORTHO05D014215 5.5e-08 62.8 120 36.7
RcHm_v2.0_Chr1g0319561 Rosa chinensis HOM05D007741 ORTHO05D342843 5.5e-08 62.8 116 41.4
FAN21G2484 Fragaria x ananassa HOM05D007741 ORTHO05D014215 9.3e-08 62.0 138 36.2
FAN17G0063 Fragaria x ananassa HOM05D015068 ORTHO05D210308 1.2e-07 61.6 107 33.6
RcHm_v2.0_Chr7g0204801 Rosa chinensis HOM05D007741 ORTHO05D016318 3.5e-07 60.1 68 50.0
RcHm_v2.0_Chr2g0160901 Rosa chinensis HOM05D007741 ORTHO05D011461 4.6e-07 59.7 92 39.1
FAN02G2026 Fragaria x ananassa HOM05D007761 ORTHO05D204379 6.0e-07 59.3 34 70.6
FAN19G1460 Fragaria x ananassa HOM05D007761 ORTHO05D011461 6.0e-07 59.3 44 61.4
FAN25G2115 Fragaria x ananassa HOM05D007741 ORTHO05D014215 7.9e-07 58.9 72 50.0
FAN05G2747 Fragaria x ananassa HOM05D015953 ORTHO05D202276 1.3e-06 58.2 89 41.6
FAN11G2655 Fragaria x ananassa HOM05D022094 ORTHO05D202872 1.3e-06 58.2 33 75.8
FAN12G2794 Fragaria x ananassa HOM05D007741 ORTHO05D210173 1.8e-06 57.8 51 56.9
FAN22G1235 Fragaria x ananassa HOM05D007761 ORTHO05D011461 1.8e-06 57.8 95 38.9
FAN27G0095 Fragaria x ananassa HOM05D007761 ORTHO05D011461 1.8e-06 57.8 95 40.0
RcHm_v2.0_Chr6g0245711 Rosa chinensis HOM05D000057 ORTHO05D000021 1.8e-06 57.8 53 54.7
FAN15G2716 Fragaria x ananassa HOM05D007761 ORTHO05D015647 2.3e-06 57.4 40 62.5
FAN01G0429 Fragaria x ananassa HOM05D007761 ORTHO05D011461 3.0e-06 57.0 95 40.0
FAN05G5759 Fragaria x ananassa HOM05D007761 ORTHO05D201104 3.0e-06 57.0 104 37.5
FAN07G0379 Fragaria x ananassa HOM05D040498 ORTHO05D035315 3.0e-06 57.0 152 34.9
FAN12G3425 Fragaria x ananassa HOM05D008445 ORTHO05D011083 3.0e-06 57.0 162 34.0
FAN24G1835 Fragaria x ananassa HOM05D018529 ORTHO05D016305 3.0e-06 57.0 44 56.8
FAN02G0387 Fragaria x ananassa HOM05D007761 ORTHO05D011083 3.9e-06 56.6 70 51.4
FAN06G3588 Fragaria x ananassa HOM05D007741 ORTHO05D201100 5.1e-06 56.2 85 43.5
FAN12G3907 Fragaria x ananassa HOM05D022609 ORTHO05D029410 5.1e-06 56.2 78 41.0
RcHm_v2.0_Chr7g0218611 Rosa chinensis HOM05D017029 ORTHO05D022658 5.1e-06 56.2 50 52.0


User provided reference genes

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