Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0358021 Rosa chinensis HOM05D004139 ORTHO05D004873 2.4e-34 148.3 77 100.0
RcHm_v2.0_Chr1g0357901 Rosa chinensis HOM05D004139 ORTHO05D004873 1.3e-30 136.0 76 92.1
RcHm_v2.0_Chr1g0358161 Rosa chinensis HOM05D004139 ORTHO05D004873 2.4e-29 131.7 77 92.2
RcHm_v2.0_Chr1g0357601 Rosa chinensis HOM05D004139 ORTHO05D004873 1.1e-18 96.3 51 96.1
FAN03G2760 Fragaria x ananassa HOM05D004139 ORTHO05D004873 1.2e-17 92.8 51 92.2
FAN10G1735 Fragaria x ananassa HOM05D004139 ORTHO05D004873 1.2e-17 92.8 51 92.2
FAN10G1927 Fragaria x ananassa HOM05D004139 ORTHO05D004873 1.2e-17 92.8 51 92.2
FvH4_7g15180 Fragaria vesca HOM05D004139 ORTHO05D004873 1.0e-16 89.7 51 88.2
FAN06G0792 Fragaria x ananassa HOM05D004139 ORTHO05D004873 1.0e-16 89.7 51 88.2
FAN01G2783 Fragaria x ananassa HOM05D004139 ORTHO05D004873 1.3e-16 89.4 51 90.2
FAN06G4247 Fragaria x ananassa HOM05D004139 ORTHO05D004873 1.8e-16 89.0 74 71.6
Cc02_g38470 Coffea canephora HOM05D004139 ORTHO05D004873 2.4e-13 78.6 52 78.8
MD07G1132400 Malus domestica HOM05D004139 ORTHO05D004873 2.4e-13 78.6 55 80.0
Nitab4.5_0000915g0160 Nicotiana tabacum HOM05D004139 ORTHO05D004873 2.4e-13 78.6 52 82.7
Prupe.2G176300 Prunus persica HOM05D004139 ORTHO05D004873 2.4e-13 78.6 55 81.8
Peaxi162Scf00020g01226 Petunia axillaris HOM05D004139 ORTHO05D004873 9.1e-13 76.6 52 80.8
Gohir.D08G153900 Gossypium hirsutum HOM05D004139 ORTHO05D004873 1.5e-12 75.9 52 76.9
Sopen01g038830 Solanum pennellii HOM05D004139 ORTHO05D004873 2.6e-12 75.1 52 76.9
PGSC0003DMG400000190 Solanum tuberosum HOM05D004139 ORTHO05D004873 2.6e-12 75.1 52 76.9
MD01G1070100 Malus domestica HOM05D004139 ORTHO05D004873 4.5e-12 74.3 55 78.2
Dinv32515 Davidia involucrata HOM05D004139 ORTHO05D004873 5.9e-12 73.9 52 76.9
CAN.G78.121 Capsicum annuum HOM05D004139 ORTHO05D004873 7.7e-12 73.6 52 75.0
Solyc01g095040.3 Solanum lycopersicum HOM05D004139 ORTHO05D004873 7.7e-12 73.6 52 75.0
GSVIVG01026959001 Vitis vinifera HOM05D004139 ORTHO05D004873 7.7e-12 73.6 52 75.0
Gohir.A11G091900 Gossypium hirsutum HOM05D004139 ORTHO05D004873 1.3e-11 72.8 53 77.4
COL.COLO4_12769 Corchorus olitorius HOM05D004139 ORTHO05D004873 1.7e-11 72.4 53 77.4
Manes.01G252900 Manihot esculenta HOM05D004139 ORTHO05D004873 1.7e-11 72.4 53 79.2
Cfa003879 Carpinus fangiana HOM05D004139 ORTHO05D004873 2.2e-11 72.0 53 77.4
Thecc.01G353300 Theobroma cacao HOM05D004139 ORTHO05D004873 2.2e-11 72.0 53 77.4
DCAR_008636 Daucus carota HOM05D004139 ORTHO05D004873 2.9e-11 71.6 52 75.0
Oeu018961.1 Olea europaea HOM05D004139 ORTHO05D004873 2.9e-11 71.6 53 77.4
PGR031G0269 Punica granatum HOM05D004139 ORTHO05D004873 2.9e-11 71.6 53 75.5
QL04p055168 Quercus lobata HOM05D004139 ORTHO05D004873 2.9e-11 71.6 53 79.2
Cpa.g.sc184.28 Carica papaya HOM05D004139 ORTHO05D004873 3.8e-11 71.2 53 77.4
CiPaw.01G065900 Carya illinoinensis HOM05D004139 ORTHO05D004873 3.8e-11 71.2 53 77.4
Haze_15555 Corylus avellana HOM05D004139 ORTHO05D004873 3.8e-11 71.2 53 77.4
Duzib138G1274 Durio zibethinus HOM05D004139 ORTHO05D004873 3.8e-11 71.2 53 75.5
Gohir.D11G096700 Gossypium hirsutum HOM05D004139 ORTHO05D004873 3.8e-11 71.2 53 75.5
Gorai.004G159800 Gossypium raimondii HOM05D004139 ORTHO05D004873 3.8e-11 71.2 53 75.5
Gorai.007G103000 Gossypium raimondii HOM05D004139 ORTHO05D004873 3.8e-11 71.2 53 75.5
EL10Ac1g00363 Beta vulgaris HOM05D004139 ORTHO05D004873 6.5e-11 70.5 51 72.5
Ah.05g180200 Amaranthus hybridus HOM05D004139 ORTHO05D004873 8.5e-11 70.1 51 70.6
Oeu054345.1 Olea europaea HOM05D004139 ORTHO05D004873 8.5e-11 70.1 53 75.5
Sed0010543 Sechium edule HOM05D004139 ORTHO05D004873 8.5e-11 70.1 53 73.6
Sed0003876 Sechium edule HOM05D004139 ORTHO05D004873 1.1e-10 69.7 53 73.6
MSTRG.4838 Avicennia marina HOM05D004139 ORTHO05D004873 1.4e-10 69.3 52 71.2
CSS0009771 Camellia sinensis var. sinensis HOM05D004139 ORTHO05D004873 1.4e-10 69.3 53 75.5
Gohir.A08G132500 Gossypium hirsutum HOM05D004139 ORTHO05D004873 1.4e-10 69.3 53 73.6
Lj9A588G64 Lonicera japonica HOM05D004139 ORTHO05D004873 1.4e-10 69.3 52 75.0
Sc23g0002600 Simmondsia chinensis HOM05D004139 ORTHO05D004873 1.4e-10 69.3 53 75.5
CiPaw.02G034000 Carya illinoinensis HOM05D004139 ORTHO05D004873 1.9e-10 68.9 53 75.5
Migut.N01462 Erythranthe guttata HOM05D004139 ORTHO05D004873 1.9e-10 68.9 53 77.4
Potri.002G163200 Populus trichocarpa HOM05D004139 ORTHO05D004873 1.9e-10 68.9 53 75.5
Rhsim07G0011100 Rhododendron simsii HOM05D004139 ORTHO05D004873 1.9e-10 68.9 53 77.4
MSTRG.28234 Avicennia marina HOM05D004139 ORTHO05D004873 2.5e-10 68.6 53 73.6
ClCG05G001290 Citrullus lanatus HOM05D004139 ORTHO05D004873 2.5e-10 68.6 53 71.7
Eucgr.D02321 Eucalyptus grandis HOM05D004139 ORTHO05D004873 2.5e-10 68.6 53 71.7
MELO3C006085.2 Cucumis melo HOM05D004139 ORTHO05D004873 3.2e-10 68.2 53 71.7
Sabra02G0147300 Salix brachista HOM05D004139 ORTHO05D004873 3.2e-10 68.2 53 73.6
SGA_v2.0_scaffold43G16391 Striga asiatica HOM05D004139 ORTHO05D004873 3.2e-10 68.2 52 67.3
Hma1.2p1_0623F.1_g191015 Hydrangea macrophylla HOM05D004139 ORTHO05D004873 4.2e-10 67.8 52 67.3
Potri.014G089400 Populus trichocarpa HOM05D004139 ORTHO05D004873 4.2e-10 67.8 53 73.6
Sabra14G0065100 Salix brachista HOM05D004139 ORTHO05D004873 4.2e-10 67.8 53 71.7
TWI59G0388 Tripterygium wilfordii HOM05D004139 ORTHO05D004873 4.2e-10 67.8 53 73.6
Aqoxy7G00189 Aquilegia oxysepala HOM05D004139 ORTHO05D004873 5.5e-10 67.4 53 71.7
TAR629G2568 Trochodendron aralioides HOM05D004139 ORTHO05D004873 5.5e-10 67.4 53 73.6
SalBow5G0787 Salvia bowleyana HOM05D004139 ORTHO05D004873 7.2e-10 67.0 53 71.7
SalBow5G4419 Salvia bowleyana HOM05D004139 ORTHO05D004873 7.2e-10 67.0 53 71.7
HanXRQChr04g0121381 Helianthus annuus HOM05D004139 ORTHO05D004873 9.4e-10 66.6 52 75.0
Nn1g01661 Nelumbo nucifera HOM05D004139 ORTHO05D004873 9.4e-10 66.6 53 73.6
Nn6g32432 Nelumbo nucifera HOM05D004139 ORTHO05D004873 9.4e-10 66.6 53 73.6
MSTRG.17294 Avicennia marina HOM05D004139 ORTHO05D004873 1.2e-09 66.2 53 73.6
Manes.05G030100 Manihot esculenta HOM05D004139 ORTHO05D004873 1.2e-09 66.2 53 69.8
SalBow3G2657 Salvia bowleyana HOM05D004139 ORTHO05D004873 1.2e-09 66.2 53 69.8
Actinidia20155 Actinidia chinensis HOM05D004139 ORTHO05D004873 1.6e-09 65.9 53 71.7
arahy.Tifrunner.gnm1.ann1.G1BLE5 Arachis hypogaea HOM05D004139 ORTHO05D004873 1.6e-09 65.9 52 73.1
arahy.Tifrunner.gnm1.ann1.Y78NPN Arachis hypogaea HOM05D004139 ORTHO05D004873 1.6e-09 65.9 52 73.1
AUR62022611 Chenopodium quinoa HOM05D004139 ORTHO05D004873 1.6e-09 65.9 51 68.6
Ciclev10019285m.g Citrus clementina HOM05D004139 ORTHO05D004873 1.6e-09 65.9 52 71.2
vmacro13237 Vaccinium macrocarpon HOM05D004139 ORTHO05D004873 1.6e-09 65.9 54 70.4
Actinidia10064 Actinidia chinensis HOM05D004139 ORTHO05D004873 2.1e-09 65.5 58 65.5
CANSAT56G2748 Cannabis sativa HOM05D004139 ORTHO05D004873 2.1e-09 65.5 53 71.7
ECA236G4877 Erigeron canadensis HOM05D004139 ORTHO05D004873 2.1e-09 65.5 52 73.1
Hma1.2p1_0627F.1_g191690 Hydrangea macrophylla HOM05D004139 ORTHO05D004873 2.1e-09 65.5 54 66.7
Hund16674 Selenicereus undatus HOM05D004139 ORTHO05D004873 2.1e-09 65.5 51 62.7
Zm00001eb021820 Zea mays HOM05D004139 ORTHO05D004873 2.1e-09 65.5 54 70.4
Zm00001eb001910 Zea mays HOM05D004139 ORTHO05D004873 2.7e-09 65.1 54 70.4
PSO478G1271 Papaver somniferum HOM05D004139 ORTHO05D004873 3.6e-09 64.7 51 68.6
PSO782G2833 Papaver somniferum HOM05D004139 ORTHO05D004873 3.6e-09 64.7 51 68.6
Lalb_Chr03g0038301 Lupinus albus HOM05D004139 ORTHO05D004873 4.6e-09 64.3 52 71.2
HPP92_003462 Vanilla planifolia HOM05D004139 ORTHO05D004873 4.6e-09 64.3 53 67.9
ATR0661G136 Amborella trichopoda HOM05D004139 ORTHO05D004873 6.1e-09 63.9 54 64.8
Hund27248 Selenicereus undatus HOM05D004139 ORTHO05D004873 6.1e-09 63.9 51 64.7
AUR62004405 Chenopodium quinoa HOM05D004139 ORTHO05D004873 7.9e-09 63.5 51 66.7
THA.LOC104801394 Tarenaya hassleriana HOM05D004139 ORTHO05D004873 7.9e-09 63.5 52 67.3
Atru.chr5.554 Acer truncatum HOM05D004139 ORTHO05D004873 1.0e-08 63.2 51 72.5
MBI04_g15071_MAGBIO Magnolia biondii HOM05D004139 ORTHO05D004873 1.0e-08 63.2 53 69.8
Os10g0533000 Oryza sativa ssp. japonica HOM05D004139 ORTHO05D004873 1.0e-08 63.2 54 68.5
Hund16641 Selenicereus undatus HOM05D004139 ORTHO05D004873 1.0e-08 63.2 71 49.3
Lsat_1_v5_gn_7_3821 Lactuca sativa HOM05D004139 ORTHO05D004873 1.4e-08 62.8 52 73.1
Ca_07939_v3 Cicer arietinum L. HOM05D004139 ORTHO05D004873 1.8e-08 62.4 52 67.3
Lj1g0024287 Lotus japonicus HOM05D004139 ORTHO05D004873 1.8e-08 62.4 52 65.4
Lalb_Chr19g0126891 Lupinus albus HOM05D004139 ORTHO05D004873 1.8e-08 62.4 52 67.3
TPR.G22297 Trifolium pratense HOM05D004139 ORTHO05D004873 1.8e-08 62.4 51 66.7
Medtr7g078990 Medicago truncatula HOM05D004139 ORTHO05D004873 2.3e-08 62.0 51 66.7
HanXRQChr06g0170301 Helianthus annuus HOM05D004139 ORTHO05D004873 3.0e-08 61.6 52 69.2
Aa31LG1G10760 Aethionema arabicum HOM05D004139 ORTHO05D004873 3.9e-08 61.2 52 63.5
CDE02G4181 Ceratophyllum demersum HOM05D004139 ORTHO05D004873 3.9e-08 61.2 53 66.0
Glyma.18G237800 Glycine max HOM05D004139 ORTHO05D004873 6.7e-08 60.5 52 67.3
TAR636G3175 Trochodendron aralioides HOM05D004139 ORTHO05D004873 8.8e-08 60.1 35 82.9
BraA10t42327Z Brassica rapa HOM05D004139 ORTHO05D004873 1.1e-07 59.7 52 63.5
Phvul.008G058900 Phaseolus vulgaris HOM05D004139 ORTHO05D004873 1.1e-07 59.7 52 65.4
VMungo1383G0046 Vigna mungo HOM05D004139 ORTHO05D004873 1.1e-07 59.7 52 65.4
Glyma.09G255200 Glycine max HOM05D004139 ORTHO05D004873 1.5e-07 59.3 52 65.4
SEGI_14155 Sequoiadendron giganteum HOM05D004139 ORTHO05D004873 1.5e-07 59.3 53 64.2
BolC5t28840H Brassica oleracea HOM05D004139 ORTHO05D004873 2.0e-07 58.9 52 63.5
A10p00480 Brassica napus HOM05D004139 ORTHO05D004873 2.6e-07 58.5 52 63.5
AT1G01510 Arabidopsis thaliana HOM05D004139 ORTHO05D004873 3.3e-07 58.2 52 61.5
Carub.0001s0073 Capsella rubella HOM05D004139 ORTHO05D004873 3.3e-07 58.2 52 61.5
CARHR000860 Cardamine hirsuta HOM05D004139 ORTHO05D004873 3.3e-07 58.2 52 61.5
Thhalv10007060m.g Eutrema salsugineum HOM05D004139 ORTHO05D004873 3.3e-07 58.2 52 61.5
Sp1g00800 Schrenkiella parvula HOM05D004139 ORTHO05D004873 3.3e-07 58.2 52 61.5
Duzib133G0727 Durio zibethinus HOM05D004139 ORTHO05D004873 4.4e-07 57.8 35 80.0
AL1G10900 Arabidopsis lyrata HOM05D004139 ORTHO05D004873 5.7e-07 57.4 52 61.5
BcaB03g13589 Brassica carinata HOM05D004139 ORTHO05D004873 5.7e-07 57.4 53 62.3
C05p00510 Brassica napus HOM05D004139 ORTHO05D004873 5.7e-07 57.4 53 62.3
SHI13391 Sapria himalayana HOM05D004139 ORTHO05D004873 5.7e-07 57.4 51 60.8
unitig_748.g7106 Utricularia gibba HOM05D004139 ORTHO05D004873 7.4e-07 57.0 35 80.0
unitig_0.g2769 Utricularia gibba HOM05D004139 ORTHO05D004873 9.7e-07 56.6 35 80.0


User provided reference genes

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