Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0357961 Rosa chinensis HOM05D004139 ORTHO05D004873 3.5e-98 361.7 191 100.0
RcHm_v2.0_Chr1g0357901 Rosa chinensis HOM05D004139 ORTHO05D004873 5.6e-56 221.5 126 94.4
Prupe.2G176300 Prunus persica HOM05D004139 ORTHO05D004873 6.7e-41 171.4 127 75.6
Duzib133G0727 Durio zibethinus HOM05D004139 ORTHO05D004873 3.7e-39 165.6 144 67.4
MD01G1070100 Malus domestica HOM05D004139 ORTHO05D004873 7.7e-37 157.9 127 72.4
Cfa003879 Carpinus fangiana HOM05D004139 ORTHO05D004873 1.4e-35 153.7 127 69.3
Haze_15555 Corylus avellana HOM05D004139 ORTHO05D004873 4.2e-35 152.1 127 68.5
QL04p055168 Quercus lobata HOM05D004139 ORTHO05D004873 3.6e-34 149.1 127 66.1
CiPaw.02G034000 Carya illinoinensis HOM05D004139 ORTHO05D004873 6.1e-34 148.3 127 67.7
Potri.014G089400 Populus trichocarpa HOM05D004139 ORTHO05D004873 1.4e-33 147.1 127 65.4
COL.COLO4_12769 Corchorus olitorius HOM05D004139 ORTHO05D004873 3.0e-33 146.0 127 64.6
Dinv43858 Davidia involucrata HOM05D004139 ORTHO05D004873 5.1e-33 145.2 127 63.8
CiPaw.01G065900 Carya illinoinensis HOM05D004139 ORTHO05D004873 1.5e-32 143.7 127 64.6
Thecc.01G353300 Theobroma cacao HOM05D004139 ORTHO05D004873 1.5e-32 143.7 127 64.6
Sabra14G0065100 Salix brachista HOM05D004139 ORTHO05D004873 2.0e-32 143.3 127 64.6
Atru.chr5.554 Acer truncatum HOM05D004139 ORTHO05D004873 4.4e-32 142.1 127 64.6
vmacro13237 Vaccinium macrocarpon HOM05D004139 ORTHO05D004873 4.4e-32 142.1 127 63.0
Rhsim07G0011100 Rhododendron simsii HOM05D004139 ORTHO05D004873 9.7e-32 141.0 127 63.8
CANSAT56G2748 Cannabis sativa HOM05D004139 ORTHO05D004873 2.2e-31 139.8 126 62.7
Actinidia10064 Actinidia chinensis HOM05D004139 ORTHO05D004873 2.8e-31 139.4 127 63.8
ClCG05G001290 Citrullus lanatus HOM05D004139 ORTHO05D004873 2.8e-31 139.4 127 61.4
TAR629G2568 Trochodendron aralioides HOM05D004139 ORTHO05D004873 2.8e-31 139.4 127 61.4
MELO3C006085.2 Cucumis melo HOM05D004139 ORTHO05D004873 6.3e-31 138.3 127 61.4
Actinidia20155 Actinidia chinensis HOM05D004139 ORTHO05D004873 8.2e-31 137.9 127 63.0
Dinv32515 Davidia involucrata HOM05D004139 ORTHO05D004873 1.8e-30 136.7 127 62.2
Sabra02G0147300 Salix brachista HOM05D004139 ORTHO05D004873 1.8e-30 136.7 127 59.8
CSS0009771 Camellia sinensis var. sinensis HOM05D004139 ORTHO05D004873 3.1e-30 136.0 127 60.6
Lj1g0024287 Lotus japonicus HOM05D004139 ORTHO05D004873 1.5e-29 133.7 127 61.4
Duzib138G1274 Durio zibethinus HOM05D004139 ORTHO05D004873 3.4e-29 132.5 127 61.4
Potri.002G163200 Populus trichocarpa HOM05D004139 ORTHO05D004873 3.4e-29 132.5 127 59.8
Gorai.007G103000 Gossypium raimondii HOM05D004139 ORTHO05D004873 4.5e-29 132.1 127 60.6
Nn6g32432 Nelumbo nucifera HOM05D004139 ORTHO05D004873 4.5e-29 132.1 130 58.5
Ciclev10019285m.g Citrus clementina HOM05D004139 ORTHO05D004873 7.7e-29 131.3 128 60.9
Gohir.A11G091900 Gossypium hirsutum HOM05D004139 ORTHO05D004873 7.7e-29 131.3 127 60.6
Hma1.2p1_0627F.1_g191690 Hydrangea macrophylla HOM05D004139 ORTHO05D004873 7.7e-29 131.3 128 60.9
TWI59G0388 Tripterygium wilfordii HOM05D004139 ORTHO05D004873 7.7e-29 131.3 126 57.9
Glyma.18G237800 Glycine max HOM05D004139 ORTHO05D004873 1.0e-28 131.0 127 60.6
Phvul.008G058900 Phaseolus vulgaris HOM05D004139 ORTHO05D004873 1.3e-28 130.6 127 60.6
CsaV3_3G008650 Cucumis sativus L. HOM05D004139 ORTHO05D004873 1.7e-28 130.2 127 59.8
Lalb_Chr19g0126891 Lupinus albus HOM05D004139 ORTHO05D004873 2.2e-28 129.8 127 61.4
arahy.Tifrunner.gnm1.ann1.Y78NPN Arachis hypogaea HOM05D004139 ORTHO05D004873 3.8e-28 129.0 128 60.9
Sed0003876 Sechium edule HOM05D004139 ORTHO05D004873 3.8e-28 129.0 127 60.6
Gohir.D11G096700 Gossypium hirsutum HOM05D004139 ORTHO05D004873 5.0e-28 128.6 127 59.1
TAR636G3175 Trochodendron aralioides HOM05D004139 ORTHO05D004873 6.5e-28 128.3 126 62.7
Gohir.D08G153900 Gossypium hirsutum HOM05D004139 ORTHO05D004873 8.5e-28 127.9 126 57.1
Gorai.004G159800 Gossypium raimondii HOM05D004139 ORTHO05D004873 8.5e-28 127.9 126 57.1
Medtr7g078990 Medicago truncatula HOM05D004139 ORTHO05D004873 8.5e-28 127.9 126 57.9
Psat3g106200 Pisum sativum HOM05D004139 ORTHO05D004873 8.5e-28 127.9 126 57.9
Sed0010543 Sechium edule HOM05D004139 ORTHO05D004873 8.5e-28 127.9 123 60.2
Gohir.A08G132500 Gossypium hirsutum HOM05D004139 ORTHO05D004873 1.1e-27 127.5 126 57.1
TPR.G22297 Trifolium pratense HOM05D004139 ORTHO05D004873 7.2e-27 124.8 126 57.1
AUR62022611 Chenopodium quinoa HOM05D004139 ORTHO05D004873 9.4e-27 124.4 125 57.6
Cpa.g.sc184.28 Carica papaya HOM05D004139 ORTHO05D004873 2.7e-26 122.9 127 57.5
Hma1.2p1_0018F.1_g013550 Hydrangea macrophylla HOM05D004139 ORTHO05D004873 3.6e-26 122.5 121 61.2
Ca_07939_v3 Cicer arietinum L. HOM05D004139 ORTHO05D004873 4.7e-26 122.1 126 56.3
Nn1g01661 Nelumbo nucifera HOM05D004139 ORTHO05D004873 1.4e-25 120.6 130 54.6
Glyma.09G255200 Glycine max HOM05D004139 ORTHO05D004873 2.3e-25 119.8 110 60.0
Lalb_Chr03g0038301 Lupinus albus HOM05D004139 ORTHO05D004873 2.3e-25 119.8 110 63.6
AUR62004405 Chenopodium quinoa HOM05D004139 ORTHO05D004873 3.9e-25 119.0 125 56.0
PGR031G0269 Punica granatum HOM05D004139 ORTHO05D004873 3.9e-25 119.0 127 55.1
VMungo1383G0046 Vigna mungo HOM05D004139 ORTHO05D004873 5.2e-25 118.6 107 61.7
Manes.01G252900 Manihot esculenta HOM05D004139 ORTHO05D004873 8.8e-25 117.9 127 58.3
unitig_748.g7106 Utricularia gibba HOM05D004139 ORTHO05D004873 8.8e-25 117.9 142 54.9
Hma1.2p1_0623F.1_g191015 Hydrangea macrophylla HOM05D004139 ORTHO05D004873 1.1e-24 117.5 127 59.1
Manes.05G030100 Manihot esculenta HOM05D004139 ORTHO05D004873 1.5e-24 117.1 127 56.7
Hund27248 Selenicereus undatus HOM05D004139 ORTHO05D004873 1.5e-24 117.1 127 58.3
Lj9A588G64 Lonicera japonica HOM05D004139 ORTHO05D004873 2.0e-24 116.7 125 58.4
DCAR_008636 Daucus carota HOM05D004139 ORTHO05D004873 2.6e-24 116.3 127 56.7
Nitab4.5_0000915g0160 Nicotiana tabacum HOM05D004139 ORTHO05D004873 4.4e-24 115.5 126 58.7
RcHm_v2.0_Chr1g0358071 Rosa chinensis HOM05D004139 ORTHO05D004873 1.3e-23 114.0 60 95.0
PSO478G1271 Papaver somniferum HOM05D004139 ORTHO05D004873 1.7e-23 113.6 127 52.8
ECA236G4877 Erigeron canadensis HOM05D004139 ORTHO05D004873 2.2e-23 113.2 124 54.0
CAN.G78.121 Capsicum annuum HOM05D004139 ORTHO05D004873 2.8e-23 112.8 126 59.5
Zm00001eb021820 Zea mays HOM05D004139 ORTHO05D004873 2.8e-23 112.8 121 53.7
Aqoxy7G00189 Aquilegia oxysepala HOM05D004139 ORTHO05D004873 4.8e-23 112.1 126 52.4
Peaxi162Scf00020g01226 Petunia axillaris HOM05D004139 ORTHO05D004873 4.8e-23 112.1 125 56.8
Solyc01g095040.3 Solanum lycopersicum HOM05D004139 ORTHO05D004873 8.2e-23 111.3 126 58.7
Sopen01g038830 Solanum pennellii HOM05D004139 ORTHO05D004873 8.2e-23 111.3 126 58.7
PGSC0003DMG400000190 Solanum tuberosum HOM05D004139 ORTHO05D004873 8.2e-23 111.3 126 58.7
Ah.05g180200 Amaranthus hybridus HOM05D004139 ORTHO05D004873 1.4e-22 110.5 125 54.4
Nitab4.5_0022943g0010 Nicotiana tabacum HOM05D004139 ORTHO05D004873 1.4e-22 110.5 118 61.0
RcHm_v2.0_Chr1g0358151 Rosa chinensis HOM05D004139 ORTHO05D004873 1.4e-22 110.5 61 90.2
SalBow5G4419 Salvia bowleyana HOM05D004139 ORTHO05D004873 1.4e-22 110.5 115 53.9
MSTRG.17294 Avicennia marina HOM05D004139 ORTHO05D004873 1.8e-22 110.2 125 50.4
SalBow5G0787 Salvia bowleyana HOM05D004139 ORTHO05D004873 1.8e-22 110.2 110 55.5
EL10Ac1g00363 Beta vulgaris HOM05D004139 ORTHO05D004873 3.1e-22 109.4 125 54.4
RcHm_v2.0_Chr1g0357601 Rosa chinensis HOM05D004139 ORTHO05D004873 3.1e-22 109.4 126 55.6
MSTRG.4838 Avicennia marina HOM05D004139 ORTHO05D004873 5.3e-22 108.6 126 53.2
SalBow3G2657 Salvia bowleyana HOM05D004139 ORTHO05D004873 5.3e-22 108.6 126 55.6
MSTRG.28234 Avicennia marina HOM05D004139 ORTHO05D004873 9.1e-22 107.8 126 53.2
Cc02_g38470 Coffea canephora HOM05D004139 ORTHO05D004873 2.0e-21 106.7 127 49.6
Migut.N01462 Erythranthe guttata HOM05D004139 ORTHO05D004873 3.5e-21 105.9 125 52.0
HanXRQChr04g0121381 Helianthus annuus HOM05D004139 ORTHO05D004873 3.5e-21 105.9 111 55.0
Eucgr.D02321 Eucalyptus grandis HOM05D004139 ORTHO05D004873 7.7e-21 104.8 127 51.2
GSVIVG01026959001 Vitis vinifera HOM05D004139 ORTHO05D004873 7.7e-21 104.8 78 69.2
Os03g0126100 Oryza sativa ssp. japonica HOM05D004139 ORTHO05D004873 1.0e-20 104.4 127 51.2
THA.LOC104801394 Tarenaya hassleriana HOM05D004139 ORTHO05D004873 1.0e-20 104.4 130 50.8
Oeu054345.1 Olea europaea HOM05D004139 ORTHO05D004873 1.3e-20 104.0 127 52.0
Oeu018961.1 Olea europaea HOM05D004139 ORTHO05D004873 1.7e-20 103.6 127 49.6
Hund16674 Selenicereus undatus HOM05D004139 ORTHO05D004873 2.2e-20 103.2 126 50.0
Sc23g0002600 Simmondsia chinensis HOM05D004139 ORTHO05D004873 2.2e-20 103.2 127 48.8
PSO782G2833 Papaver somniferum HOM05D004139 ORTHO05D004873 2.9e-20 102.8 127 48.8
HanXRQChr06g0170301 Helianthus annuus HOM05D004139 ORTHO05D004873 3.8e-20 102.4 124 50.8
MBI04_g15071_MAGBIO Magnolia biondii HOM05D004139 ORTHO05D004873 5.0e-20 102.1 130 50.0
RcHm_v2.0_Chr1g0358001 Rosa chinensis HOM05D004139 ORTHO05D345912 1.1e-19 100.9 59 93.2
ATR0661G136 Amborella trichopoda HOM05D004139 ORTHO05D004873 3.2e-19 99.4 126 48.4
FAN06G0792 Fragaria x ananassa HOM05D004139 ORTHO05D004873 3.2e-19 99.4 126 54.0
SEGI_14155 Sequoiadendron giganteum HOM05D004139 ORTHO05D004873 3.2e-19 99.4 127 47.2
SGA_v2.0_scaffold43G16391 Striga asiatica HOM05D004139 ORTHO05D004873 3.2e-19 99.4 111 52.3
Hma1.2p1_2961F.1_g330910 Hydrangea macrophylla HOM05D004139 ORTHO05D004873 9.4e-19 97.8 127 50.4
Zm00001eb001910 Zea mays HOM05D004139 ORTHO05D004873 9.4e-19 97.8 126 50.0
FvH4_7g15180 Fragaria vesca HOM05D004139 ORTHO05D004873 1.2e-18 97.4 126 53.2
Sp1g00800 Schrenkiella parvula HOM05D004139 ORTHO05D004873 1.2e-18 97.4 132 49.2
Aa31LG1G10760 Aethionema arabicum HOM05D004139 ORTHO05D004873 1.6e-18 97.1 127 46.5
AT1G01510 Arabidopsis thaliana HOM05D004139 ORTHO05D004873 1.6e-18 97.1 126 46.8
MD07G1132400 Malus domestica HOM05D004139 ORTHO05D004873 1.6e-18 97.1 127 53.5
Hund16641 Selenicereus undatus HOM05D004139 ORTHO05D004873 2.1e-18 96.7 126 48.4
FAN10G1735 Fragaria x ananassa HOM05D004139 ORTHO05D004873 2.7e-18 96.3 126 52.4
FAN10G1927 Fragaria x ananassa HOM05D004139 ORTHO05D004873 2.7e-18 96.3 126 52.4
AL1G10900 Arabidopsis lyrata HOM05D004139 ORTHO05D004873 3.6e-18 95.9 126 46.8
Carub.0001s0073 Capsella rubella HOM05D004139 ORTHO05D004873 3.6e-18 95.9 126 47.6
Os10g0533000 Oryza sativa ssp. japonica HOM05D004139 ORTHO05D004873 4.7e-18 95.5 126 46.0
FAN01G2783 Fragaria x ananassa HOM05D004139 ORTHO05D004873 8.0e-18 94.7 126 52.4
Lsat_1_v5_gn_7_3821 Lactuca sativa HOM05D004139 ORTHO05D004873 1.0e-17 94.4 127 52.0
FAN03G2760 Fragaria x ananassa HOM05D004139 ORTHO05D004873 1.8e-17 93.6 126 51.6
BcaB03g13589 Brassica carinata HOM05D004139 ORTHO05D004873 3.0e-17 92.8 64 70.3
A10p00480 Brassica napus HOM05D004139 ORTHO05D004873 3.0e-17 92.8 64 70.3
C05p00510 Brassica napus HOM05D004139 ORTHO05D004873 3.0e-17 92.8 64 70.3
CDE02G4181 Ceratophyllum demersum HOM05D004139 ORTHO05D004873 3.0e-17 92.8 74 67.6
FAN06G4247 Fragaria x ananassa HOM05D004139 ORTHO05D004873 3.0e-17 92.8 126 51.6
CDE11G0755 Ceratophyllum demersum HOM05D004139 ORTHO05D004873 4.0e-17 92.4 130 47.7
CARHR000860 Cardamine hirsuta HOM05D004139 ORTHO05D004873 6.7e-17 91.7 135 45.9
BolC5t28840H Brassica oleracea HOM05D004139 ORTHO05D004873 1.5e-16 90.5 57 73.7
BraA10t42327Z Brassica rapa HOM05D004139 ORTHO05D004873 1.5e-16 90.5 57 73.7
arahy.Tifrunner.gnm1.ann1.G1BLE5 Arachis hypogaea HOM05D004139 ORTHO05D004873 2.6e-16 89.7 57 71.9
HPP92_003462 Vanilla planifolia HOM05D004139 ORTHO05D004873 4.4e-16 89.0 126 48.4
Thhalv10007060m.g Eutrema salsugineum HOM05D004139 ORTHO05D004873 9.7e-16 87.8 128 47.7
unitig_0.g2768 Utricularia gibba HOM05D004139 ORTHO05D004873 9.7e-16 87.8 125 48.0
RcHm_v2.0_Chr1g0358111 Rosa chinensis HOM05D004139 ORTHO05D004873 4.8e-15 85.5 51 82.4
RcHm_v2.0_Chr1g0358011 Rosa chinensis HOM05D004139 ORTHO05D004873 8.2e-15 84.7 43 95.3
SHI13389 Sapria himalayana HOM05D004139 ORTHO05D004873 5.9e-13 78.6 125 41.6
Pp3c8_4660 Physcomitrium patens HOM05D004139 ORTHO05D004873 1.0e-12 77.8 54 64.8
Mapoly0077s0060 Marchantia polymorpha HOM05D004139 ORTHO05D004873 5.0e-12 75.5 106 38.7
Pp3c15_25330 Physcomitrium patens HOM05D004139 ORTHO05D004873 5.5e-11 72.0 56 57.1
Pp3c3_30270 Physcomitrium patens HOM05D004139 ORTHO05D004873 7.2e-11 71.6 113 40.7
CBR_g48406 Chara braunii HOM05D000019 ORTHO05D000048 9.4e-11 71.2 57 54.4
AagrBONN_evm.TU.Sc2ySwM_117.2892 Anthoceros agrestis HOM05D004139 ORTHO05D004873 2.6e-08 63.2 130 36.9
SMO259G0050 Selaginella moellendorffii HOM05D004139 ORTHO05D004873 7.5e-08 61.6 75 42.7
Pp3c9_22880 Physcomitrium patens HOM05D004139 ORTHO05D004873 1.8e-06 57.0 147 30.6


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