Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0357651 Rosa chinensis HOM05D004687 ORTHO05D006002 0.0e+00 1148.3 600 100.0
FvH4_7g15320 Fragaria vesca HOM05D004687 ORTHO05D006002 3.9e-289 997.7 595 88.4
FAN06G2065 Fragaria x ananassa HOM05D004687 ORTHO05D006002 3.9e-289 997.7 595 88.4
FAN06G2774 Fragaria x ananassa HOM05D004687 ORTHO05D006002 7.4e-288 993.4 595 88.1
FAN10G0227 Fragaria x ananassa HOM05D004687 ORTHO05D006002 5.0e-284 980.7 595 86.7
FAN10G4173 Fragaria x ananassa HOM05D004687 ORTHO05D006002 1.7e-260 902.5 595 81.7
FAN01G0098 Fragaria x ananassa HOM05D004687 ORTHO05D006002 2.4e-222 775.8 492 85.4
FAN03G2011 Fragaria x ananassa HOM05D004687 ORTHO05D006002 4.2e-190 668.7 416 86.5
Prupe.2G177100 Prunus persica HOM05D004687 ORTHO05D006002 2.5e-166 589.7 604 58.3
MD01G1070600 Malus domestica HOM05D004687 ORTHO05D006002 4.5e-144 515.8 601 52.7
CiPaw.02G034500 Carya illinoinensis HOM05D004687 ORTHO05D006002 1.2e-136 491.1 612 51.5
CANSAT56G3669 Cannabis sativa HOM05D004687 ORTHO05D006002 4.3e-134 482.6 611 49.4
Dinv32519 Davidia involucrata HOM05D004687 ORTHO05D006002 2.2e-130 470.3 619 48.9
QL04p055402 Quercus lobata HOM05D004687 ORTHO05D006002 8.3e-130 468.4 708 47.0
Cfa003875 Carpinus fangiana HOM05D004687 ORTHO05D006002 1.2e-128 464.5 577 53.6
TAR374G1208 Trochodendron aralioides HOM05D004687 ORTHO05D006002 8.1e-125 451.8 623 47.4
Atru.chr5.577 Acer truncatum HOM05D004687 ORTHO05D006002 4.9e-122 442.6 606 48.0
Atru.chr5.560 Acer truncatum HOM05D004687 ORTHO05D006002 1.9e-121 440.7 606 48.0
CSS0026327 Camellia sinensis var. sinensis HOM05D004687 ORTHO05D006002 1.2e-115 421.4 614 46.4
Lj7A508T42 Lonicera japonica HOM05D004687 ORTHO05D006002 1.3e-114 417.9 611 46.0
arahy.Tifrunner.gnm1.ann1.X9JZY0 Arachis hypogaea HOM05D004687 ORTHO05D006002 3.2e-113 413.3 611 46.8
GSVIVG01026963001 Vitis vinifera HOM05D004687 ORTHO05D006002 2.1e-112 410.6 612 45.3
arahy.Tifrunner.gnm1.ann1.PSKN5N Arachis hypogaea HOM05D004687 ORTHO05D006002 1.3e-111 407.9 612 46.2
Sabra14G0065300 Salix brachista HOM05D004687 ORTHO05D006002 5.6e-110 402.5 586 44.4
Thecc.01G352900 Theobroma cacao HOM05D004687 ORTHO05D006002 1.3e-109 401.4 603 45.3
Lj3g0008911 Lotus japonicus HOM05D004687 ORTHO05D006002 1.6e-109 401.0 601 44.8
Glyma.16G032000 Glycine max HOM05D004687 ORTHO05D006002 6.2e-109 399.1 617 45.5
VMungo0331G0070 Vigna mungo HOM05D004687 ORTHO05D006002 1.1e-108 398.3 598 46.5
Nitab4.5_0000915g0140 Nicotiana tabacum HOM05D004687 ORTHO05D006002 1.4e-108 397.9 613 44.4
Cpa.g.sc184.31 Carica papaya HOM05D004687 ORTHO05D006002 4.4e-107 392.9 597 44.6
Ciclev10019565m.g Citrus clementina HOM05D004687 ORTHO05D006002 7.6e-107 392.1 611 43.7
Lalb_Chr10g0096671 Lupinus albus HOM05D004687 ORTHO05D006002 7.6e-107 392.1 613 43.6
Manes.01G252600 Manihot esculenta HOM05D004687 ORTHO05D006002 2.9e-106 390.2 616 44.3
Solyc01g095090.3 Solanum lycopersicum HOM05D004687 ORTHO05D006002 4.9e-106 389.4 615 44.6
Cc02_g38540 Coffea canephora HOM05D004687 ORTHO05D006002 4.2e-105 386.3 613 43.1
Nn1g01677 Nelumbo nucifera HOM05D004687 ORTHO05D006002 3.0e-103 380.2 604 44.0
Phvul.010G104100 Phaseolus vulgaris HOM05D004687 ORTHO05D006002 6.6e-103 379.0 601 44.1
PGSC0003DMG400000194 Solanum tuberosum HOM05D004687 ORTHO05D006002 6.6e-103 379.0 660 42.0
Potri.014G089800 Populus trichocarpa HOM05D004687 ORTHO05D006002 1.5e-102 377.9 570 44.2
Peaxi162Scf00020g01410 Petunia axillaris HOM05D004687 ORTHO05D006002 6.2e-101 372.5 618 44.3
Rhsim07G0010800 Rhododendron simsii HOM05D004687 ORTHO05D006002 1.8e-100 370.9 633 40.3
Sc01g0003240 Simmondsia chinensis HOM05D004687 ORTHO05D006002 1.8e-100 370.9 607 43.3
COL.COLO4_12774 Corchorus olitorius HOM05D004687 ORTHO05D006002 2.4e-100 370.5 602 41.4
TWI14G1112 Tripterygium wilfordii HOM05D004687 ORTHO05D006002 2.4e-100 370.5 626 43.0
Psat4g212240 Pisum sativum HOM05D004687 ORTHO05D006002 3.1e-100 370.2 610 42.1
Aqoxy7G00187 Aquilegia oxysepala HOM05D004687 ORTHO05D006002 4.0e-100 369.8 629 41.0
Oeu063679.1 Olea europaea HOM05D004687 ORTHO05D006002 9.9e-99 365.2 616 41.9
Duzib138G0011 Durio zibethinus HOM05D004687 ORTHO05D006002 1.3e-98 364.8 603 42.5
ClCG06G003410 Citrullus lanatus HOM05D004687 ORTHO05D006002 1.7e-98 364.4 610 42.8
MSTRG.20861 Avicennia marina HOM05D004687 ORTHO05D006002 2.2e-98 364.0 623 42.4
Haze_15561 Corylus avellana HOM05D004687 ORTHO05D006002 3.8e-98 363.2 606 44.9
Gohir.D11G097000 Gossypium hirsutum HOM05D004687 ORTHO05D006002 3.8e-98 363.2 603 41.5
Gorai.007G103300 Gossypium raimondii HOM05D004687 ORTHO05D006002 3.8e-98 363.2 602 41.7
Sed0003221 Sechium edule HOM05D004687 ORTHO05D006002 4.9e-98 362.8 603 42.6
PGR031G1931 Punica granatum HOM05D004687 ORTHO05D006002 6.4e-98 362.5 594 42.8
Medtr8g028580 Medicago truncatula HOM05D004687 ORTHO05D006002 3.2e-97 360.1 609 41.7
Nitab4.5_0009238g0010 Nicotiana tabacum HOM05D004687 ORTHO05D006002 1.8e-95 354.4 612 42.5
Eucgr.D02323 Eucalyptus grandis HOM05D004687 ORTHO05D006002 1.9e-94 350.9 608 41.6
Migut.B01796 Erythranthe guttata HOM05D004687 ORTHO05D006002 2.1e-93 347.4 611 41.2
PSO478G3840 Papaver somniferum HOM05D004687 ORTHO05D006002 2.0e-91 340.9 629 40.7
Ca_03498_v3 Cicer arietinum L. HOM05D004687 ORTHO05D006002 2.6e-91 340.5 612 41.2
Prupe.2G177000 Prunus persica HOM05D004687 ORTHO05D006002 1.4e-89 334.7 535 44.1
MBI04_g26968_MAGBIO Magnolia biondii HOM05D004687 ORTHO05D006002 1.9e-89 334.3 620 41.3
PSO266G0021 Papaver somniferum HOM05D004687 ORTHO05D006002 2.5e-89 334.0 636 39.6
Hund27243 Selenicereus undatus HOM05D004687 ORTHO05D006002 3.1e-84 317.0 602 39.2
Peaxi162Scf00403g00830 Petunia axillaris HOM05D004687 ORTHO05D006002 2.0e-83 314.3 534 41.4
DCAR_006947 Daucus carota HOM05D004687 ORTHO05D006002 1.7e-82 311.2 576 41.1
CSS0041346 Camellia sinensis var. sinensis HOM05D004687 ORTHO05D006002 2.2e-82 310.8 510 43.3
MELO3C021180.2 Cucumis melo HOM05D004687 ORTHO05D006002 1.9e-81 307.8 629 37.7
ECA236G1242 Erigeron canadensis HOM05D004687 ORTHO05D006002 1.9e-81 307.8 603 37.0
Actinidia20159 Actinidia chinensis HOM05D004687 ORTHO05D006002 7.1e-81 305.8 614 38.6
THA.LOC104817038 Tarenaya hassleriana HOM05D004687 ORTHO05D006002 7.9e-80 302.4 593 39.1
Lsat_1_v5_gn_7_3881 Lactuca sativa HOM05D004687 ORTHO05D006002 1.0e-79 302.0 612 36.9
TPR.G28289 Trifolium pratense HOM05D004687 ORTHO05D006002 5.7e-78 296.2 576 40.3
SalBow3G3455 Salvia bowleyana HOM05D004687 ORTHO05D006002 8.2e-77 292.4 657 36.7
PGSC0003DMG400033881 Solanum tuberosum HOM05D004687 ORTHO05D006002 1.1e-76 292.0 543 39.2
Sp6g00860 Schrenkiella parvula HOM05D004687 ORTHO05D006002 5.9e-75 286.2 606 37.8
CSS0036615 Camellia sinensis var. sinensis HOM05D004687 ORTHO05D006002 7.7e-75 285.8 559 38.8
SGA_v2.0_scaffold95G28807 Striga asiatica HOM05D004687 ORTHO05D006002 1.3e-74 285.0 640 36.2
Sopen05g028410 Solanum pennellii HOM05D004687 ORTHO05D006002 2.2e-74 284.3 548 38.9
Aa31LG5G750 Aethionema arabicum HOM05D004687 ORTHO05D006002 1.1e-73 282.0 599 37.6
Solyc05g050020.3 Solanum lycopersicum HOM05D004687 ORTHO05D006002 1.4e-73 281.6 548 38.9
MD01G1070500 Malus domestica HOM05D004687 ORTHO05D006002 2.5e-73 280.8 530 39.8
BcaB01g02150 Brassica carinata HOM05D004687 ORTHO05D006002 3.2e-73 280.4 605 37.0
A03p31950 Brassica napus HOM05D004687 ORTHO05D006002 2.7e-72 277.3 601 37.1
BraA03t12367Z Brassica rapa HOM05D004687 ORTHO05D006002 4.6e-72 276.6 598 37.0
AL6G52120 Arabidopsis lyrata HOM05D004687 ORTHO05D006002 6.1e-72 276.2 604 36.4
Thhalv10029490m.g Eutrema salsugineum HOM05D004687 ORTHO05D006002 1.8e-71 274.6 606 37.0
BraA09t35739Z Brassica rapa HOM05D004687 ORTHO05D006002 6.7e-71 272.7 599 36.1
Carub.0006s3633 Capsella rubella HOM05D004687 ORTHO05D006002 8.8e-71 272.3 606 36.6
ATR0661G462 Amborella trichopoda HOM05D004687 ORTHO05D006002 4.3e-70 270.0 625 34.1
BolC3t16169H Brassica oleracea HOM05D004687 ORTHO05D006002 4.3e-70 270.0 603 36.3
BcaC01g06853 Brassica carinata HOM05D004687 ORTHO05D006002 2.2e-69 267.7 601 37.1
C03p38970 Brassica napus HOM05D004687 ORTHO05D006002 6.3e-69 266.2 601 37.3
SEGI_33633 Sequoiadendron giganteum HOM05D004687 ORTHO05D006002 8.2e-69 265.8 623 35.3
vmacro13232 Vaccinium macrocarpon HOM05D004687 ORTHO05D006002 1.1e-68 265.4 337 45.7
AT4G01270 Arabidopsis thaliana HOM05D004687 ORTHO05D006002 1.4e-68 265.0 608 35.2
BcaC04g24137 Brassica carinata HOM05D004687 ORTHO05D006002 4.1e-68 263.5 602 35.9
C09p00700 Brassica napus HOM05D004687 ORTHO05D006002 4.1e-68 263.5 602 35.9
BolC9t53004H Brassica oleracea HOM05D004687 ORTHO05D006002 4.1e-68 263.5 602 35.9
CARHR249040 Cardamine hirsuta HOM05D004687 ORTHO05D006002 4.1e-68 263.5 613 36.5
A09p00090 Brassica napus HOM05D004687 ORTHO05D006002 9.1e-68 262.3 599 35.1
Ah.05g180180 Amaranthus hybridus HOM05D004687 ORTHO05D006002 1.3e-66 258.5 308 50.6
AUR62004410 Chenopodium quinoa HOM05D004687 ORTHO05D006002 5.0e-66 256.5 325 49.8
HanXRQChr06g0170331 Helianthus annuus HOM05D004687 ORTHO05D006002 7.2e-65 252.7 592 35.1
CsaV3_6G000900 Cucumis sativus L. HOM05D004687 ORTHO05D006002 2.3e-63 247.7 515 38.3
Lalb_Chr17g0339021 Lupinus albus HOM05D004687 ORTHO05D006002 1.5e-62 245.0 237 56.5
unitig_699.g19806 Utricularia gibba HOM05D004687 ORTHO05D006002 4.4e-62 243.4 647 33.4
HanXRQChr04g0120761 Helianthus annuus HOM05D004687 ORTHO05D006002 7.4e-62 242.7 606 33.7
CSS0021310 Camellia sinensis var. sinensis HOM05D004687 ORTHO05D006002 2.8e-61 240.7 559 35.6
RcHm_v2.0_Chr2g0111671 Rosa chinensis HOM05D004687 ORTHO05D006002 4.1e-60 236.9 627 33.7
Zm00001eb416420 Zea mays HOM05D004687 ORTHO05D006002 7.2e-57 226.1 621 32.9
Gohir.A11G092200 Gossypium hirsutum HOM05D004687 ORTHO05D006002 3.6e-56 223.8 453 38.2
FvH4_1g19860 Fragaria vesca HOM05D004687 ORTHO05D006002 6.7e-55 219.5 626 32.9
BcaB01g02289 Brassica carinata HOM05D004687 ORTHO05D006002 1.3e-53 215.3 608 32.9
FAN19G0767 Fragaria x ananassa HOM05D004687 ORTHO05D006002 1.7e-53 214.9 626 32.7
FAN26G2006 Fragaria x ananassa HOM05D004687 ORTHO05D006002 4.1e-52 210.3 627 32.2
FAN28G2978 Fragaria x ananassa HOM05D004687 ORTHO05D006002 7.0e-52 209.5 626 32.4
Os08g0151700 Oryza sativa ssp. japonica HOM05D004687 ORTHO05D006002 7.2e-49 199.5 631 30.1
AUR62022616 Chenopodium quinoa HOM05D004687 ORTHO05D006002 1.2e-46 192.2 523 35.0
EL10Ac1g00358 Beta vulgaris HOM05D004687 ORTHO05D006002 2.8e-45 187.6 585 32.3
Nitab4.5_0002262g0080 Nicotiana tabacum HOM05D004687 ORTHO05D006002 8.5e-42 176.0 338 39.1
Potri.002G164000 Populus trichocarpa HOM05D004687 ORTHO05D006002 3.2e-41 174.1 330 37.0
Pp3c23_12760 Physcomitrium patens HOM05D004687 ORTHO05D006002 2.3e-39 167.9 646 27.9
SMO147G0044 Selaginella moellendorffii HOM05D004687 ORTHO05D006002 2.0e-38 164.9 324 35.2
FAN23G1626 Fragaria x ananassa HOM05D004687 ORTHO05D006002 5.7e-38 163.3 555 31.4
Lalb_Chr17g0339031 Lupinus albus HOM05D004687 ORTHO05D006002 2.8e-37 161.0 321 38.3
SGA_v2.0_scaffold95G28804 Striga asiatica HOM05D004687 ORTHO05D006002 1.4e-36 158.7 304 37.8
MD01G1071100 Malus domestica HOM05D004687 ORTHO05D006002 4.0e-31 140.6 97 71.1
Sopen01g038880 Solanum pennellii HOM05D004687 ORTHO05D006002 1.1e-28 132.5 323 36.2
GSVIVG01013521001 Vitis vinifera HOM05D004687 ORTHO05D006002 5.4e-28 130.2 124 54.8
vmacro13233 Vaccinium macrocarpon HOM05D004687 ORTHO05D006002 2.0e-27 128.3 184 45.1
SHI13366 Sapria himalayana HOM05D004687 ORTHO05D006002 2.7e-27 127.9 161 46.0
CDE11G0743 Ceratophyllum demersum HOM05D002440 ORTHO05D002576 5.0e-26 123.6 442 31.0
Nitab4.5_0003779g0080 Nicotiana tabacum HOM05D004687 ORTHO05D006002 3.3e-25 120.9 300 34.7
QL06p033484 Quercus lobata HOM05D004687 ORTHO05D006002 2.1e-24 118.2 117 50.4
SHI13367 Sapria himalayana HOM05D004687 ORTHO05D006002 5.2e-23 113.6 431 28.8
Actinidia20138 Actinidia chinensis HOM05D004687 ORTHO05D006002 2.0e-22 111.7 120 51.7
Actinidia10067 Actinidia chinensis HOM05D004687 ORTHO05D006002 2.6e-22 111.3 387 31.3
COL.COLO4_21921 Corchorus olitorius HOM05D004687 ORTHO05D006002 3.9e-18 97.4 98 50.0
CBR_g45680 Chara braunii HOM05D004687 ORTHO05D006002 1.9e-17 95.1 363 28.1
ATR0804G028 Amborella trichopoda HOM05D004687 ORTHO05D006002 2.3e-15 88.2 137 41.6
SGA_v2.0_scaffold95G28808 Striga asiatica HOM05D005821 ORTHO05D006649 1.7e-13 82.0 106 46.2
PSO541G1518 Papaver somniferum HOM05D004687 ORTHO05D006002 2.2e-13 81.6 156 34.6
Aa31sc194G60 Aethionema arabicum HOM05D004687 ORTHO05D006002 1.4e-12 79.0 150 38.0
Mapoly0091s0017 Marchantia polymorpha HOM05D004687 ORTHO05D006002 4.1e-12 77.4 318 24.8
Ca_03421_v3 Cicer arietinum L. HOM05D004687 ORTHO05D006002 3.9e-10 70.9 132 39.4
RcHm_v2.0_Chr5g0025761 Rosa chinensis HOM05D006316 ORTHO05D008032 1.2e-08 65.9 81 51.9


User provided reference genes

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