Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0357411 Rosa chinensis HOM05D006067 ORTHO05D007327 6.9e-139 497.3 247 100.0
RcHm_v2.0_Chr5g0030881 Rosa chinensis HOM05D006067 ORTHO05D007327 9.3e-128 460.3 239 96.2
FvH4_3g18260 Fragaria vesca HOM05D006067 ORTHO05D007327 4.5e-90 335.1 231 72.3
FAN11G2230 Fragaria x ananassa HOM05D006067 ORTHO05D007327 2.4e-83 312.8 231 69.7
RcHm_v2.0_Chr1g0314351 Rosa chinensis HOM05D006067 ORTHO05D007327 2.4e-59 233.0 110 98.2
Prupe.4G164500 Prunus persica HOM05D006067 ORTHO05D007327 3.5e-58 229.2 207 59.4
FAN21G2926 Fragaria x ananassa HOM05D006067 ORTHO05D007327 8.4e-44 181.4 229 48.5
MD11G1264000 Malus domestica HOM05D006067 ORTHO05D007327 2.1e-42 176.8 134 64.2
RcHm_v2.0_Chr7g0196621 Rosa chinensis HOM05D006067 ORTHO05D007327 5.6e-40 168.7 85 90.6
FAN25G1049 Fragaria x ananassa HOM05D006067 ORTHO05D007327 8.1e-39 164.9 158 58.9
Haze_00805 Corylus avellana HOM05D006067 ORTHO05D007327 1.4e-35 154.1 142 54.9
FAN16G1756 Fragaria x ananassa HOM05D006067 ORTHO05D007327 2.4e-35 153.3 231 43.7
Atru.chr2.2107 Acer truncatum HOM05D006067 ORTHO05D007327 9.3e-35 151.4 197 44.2
vmacro09492 Vaccinium macrocarpon HOM05D006067 ORTHO05D007327 9.3e-35 151.4 177 45.8
TWI38G1841 Tripterygium wilfordii HOM05D006067 ORTHO05D007327 4.6e-34 149.1 191 44.0
Potri.011G109600 Populus trichocarpa HOM05D006067 ORTHO05D007327 3.0e-33 146.4 166 47.0
Cfa015710 Carpinus fangiana HOM05D006067 ORTHO05D007327 8.7e-33 144.8 139 53.2
Nn1g04444 Nelumbo nucifera HOM05D006067 ORTHO05D007327 1.1e-32 144.4 198 43.4
Sabra11G0096900 Salix brachista HOM05D006067 ORTHO05D007327 4.3e-32 142.5 175 46.3
ClCG11G017430 Citrullus lanatus HOM05D006067 ORTHO05D007327 3.6e-31 139.4 191 46.1
Lalb_Chr03g0031151 Lupinus albus HOM05D006067 ORTHO05D007327 1.8e-30 137.1 102 60.8
Sed0004545 Sechium edule HOM05D006067 ORTHO05D007327 1.8e-30 137.1 197 43.1
Gohir.A01G054200 Gossypium hirsutum HOM05D006067 ORTHO05D007327 6.9e-30 135.2 201 43.8
Thecc.07G117200 Theobroma cacao HOM05D006067 ORTHO05D007327 9.0e-30 134.8 128 53.1
CSS0029215 Camellia sinensis var. sinensis HOM05D006067 ORTHO05D007327 1.2e-29 134.4 131 52.7
Rhsim04G0026500 Rhododendron simsii HOM05D006067 ORTHO05D007327 1.2e-29 134.4 235 37.9
Cpa.g.sc77.10 Carica papaya HOM05D006067 ORTHO05D007327 2.0e-29 133.7 122 54.1
Dinv14994 Davidia involucrata HOM05D006614 ORTHO05D008217 3.4e-29 132.9 202 39.1
Ciclev10024254m.g Citrus clementina HOM05D006067 ORTHO05D007327 1.7e-28 130.6 105 61.0
Glyma.08G245900 Glycine max HOM05D006067 ORTHO05D007327 1.1e-27 127.9 94 58.5
CsaV3_4G033090 Cucumis sativus L. HOM05D006067 ORTHO05D007327 1.4e-27 127.5 234 41.5
MELO3C025643.2 Cucumis melo HOM05D006067 ORTHO05D007327 1.9e-27 127.1 185 43.8
Rhsim06G0208300 Rhododendron simsii HOM05D006067 ORTHO05D007327 1.9e-27 127.1 197 42.1
arahy.Tifrunner.gnm1.ann1.V1MG1J Arachis hypogaea HOM05D006067 ORTHO05D007327 2.4e-27 126.7 99 54.5
Glyma.12G229800 Glycine max HOM05D006067 ORTHO05D007327 2.4e-27 126.7 94 58.5
vmacro11942 Vaccinium macrocarpon HOM05D006067 ORTHO05D007327 2.4e-27 126.7 188 42.0
Glyma.13G269800 Glycine max HOM05D006067 ORTHO05D007327 3.2e-27 126.3 94 58.5
Manes.15G095100 Manihot esculenta HOM05D006067 ORTHO05D007327 3.2e-27 126.3 165 46.1
Gorai.002G054500 Gossypium raimondii HOM05D006067 ORTHO05D007327 5.5e-27 125.6 192 41.7
MBI07_g09563_MAGBIO Magnolia biondii HOM05D006067 ORTHO05D007327 9.3e-27 124.8 109 55.0
PGR031G0069 Punica granatum HOM05D006067 ORTHO05D007327 9.3e-27 124.8 126 50.8
arahy.Tifrunner.gnm1.ann1.9BW5EX Arachis hypogaea HOM05D006067 ORTHO05D007327 1.6e-26 124.0 99 52.5
TPR.G13942 Trifolium pratense HOM05D006067 ORTHO05D007327 2.7e-26 123.2 133 44.4
QL12p009545 Quercus lobata HOM05D006067 ORTHO05D007327 3.5e-26 122.9 131 49.6
TAR624G0749 Trochodendron aralioides HOM05D006067 ORTHO05D007327 4.6e-26 122.5 184 40.8
Gohir.D01G042720 Gossypium hirsutum HOM05D006067 ORTHO05D007327 6.0e-26 122.1 219 37.4
Ca_03979_v3 Cicer arietinum L. HOM05D006067 ORTHO05D007327 7.9e-26 121.7 128 48.4
Aqoxy4G00317 Aquilegia oxysepala HOM05D006067 ORTHO05D007327 2.3e-25 120.2 129 47.3
Lalb_Chr24g0400331 Lupinus albus HOM05D006067 ORTHO05D007327 2.3e-25 120.2 96 52.1
Duzib268G0832 Durio zibethinus HOM05D006067 ORTHO05D007327 3.0e-25 119.8 218 38.5
Lalb_Chr14g0365891 Lupinus albus HOM05D006067 ORTHO05D007327 3.9e-25 119.4 96 52.1
Medtr2g076330 Medicago truncatula HOM05D006067 ORTHO05D007327 1.5e-24 117.5 149 40.9
VMungo1080G1893 Vigna mungo HOM05D006067 ORTHO05D007327 1.5e-24 117.5 94 53.2
Phvul.005G065400 Phaseolus vulgaris HOM05D006067 ORTHO05D007327 1.9e-24 117.1 94 54.3
GSVIVG01014195001 Vitis vinifera HOM05D006067 ORTHO05D007327 3.3e-24 116.3 184 39.1
Sabra16G0255800 Salix brachista HOM05D006067 ORTHO05D007327 5.6e-24 115.5 253 34.0
Cc05_g11060 Coffea canephora HOM05D006067 ORTHO05D007327 9.6e-24 114.8 217 34.6
COL.COLO4_17541 Corchorus olitorius HOM05D006067 ORTHO05D007327 1.3e-23 114.4 221 36.2
Phvul.011G162500 Phaseolus vulgaris HOM05D006067 ORTHO05D007327 1.3e-23 114.4 154 40.9
Peaxi162Scf00111g01468 Petunia axillaris HOM05D001990 ORTHO05D002033 1.6e-23 114.0 100 53.0
CANSAT35G0531 Cannabis sativa HOM05D006067 ORTHO05D007327 2.1e-23 113.6 97 52.6
Glyma.06G229200 Glycine max HOM05D006067 ORTHO05D007327 4.8e-23 112.5 147 41.5
Nitab4.5_0006953g0020 Nicotiana tabacum HOM05D001990 ORTHO05D002033 8.1e-23 111.7 95 55.8
VMungo1127G0097 Vigna mungo HOM05D006067 ORTHO05D007327 1.4e-22 110.9 220 33.6
MSTRG.6678 Avicennia marina HOM05D006067 ORTHO05D007327 1.8e-22 110.5 135 43.7
Lj3g0019341 Lotus japonicus HOM05D006067 ORTHO05D007327 4.0e-22 109.4 94 50.0
Sopen07g030660 Solanum pennellii HOM05D006067 ORTHO05D007327 9.0e-22 108.2 125 44.0
CSS0028289 Camellia sinensis var. sinensis HOM05D006067 ORTHO05D007327 1.2e-21 107.8 132 43.2
Lj3g0000770 Lotus japonicus HOM05D006067 ORTHO05D007327 2.0e-21 107.1 226 33.6
HanXRQChr13g0389481 Helianthus annuus HOM05D006067 ORTHO05D007327 3.4e-21 106.3 150 41.3
Peaxi162Scf00692g00416 Petunia axillaris HOM05D006067 ORTHO05D007327 4.5e-21 105.9 162 35.2
SalBow8G2822 Salvia bowleyana HOM05D006067 ORTHO05D007327 4.5e-21 105.9 156 42.9
SGA_v2.0_scaffold70G23375 Striga asiatica HOM05D006067 ORTHO05D007327 4.5e-21 105.9 211 38.9
EL10Ac4g08347 Beta vulgaris HOM05D006067 ORTHO05D007327 1.3e-20 104.4 203 34.0
CDE02G3386 Ceratophyllum demersum HOM05D006067 ORTHO05D007327 1.3e-20 104.4 152 36.8
Migut.M00726 Erythranthe guttata HOM05D006067 ORTHO05D007327 1.7e-20 104.0 147 43.5
Psat4g136000 Pisum sativum HOM05D006067 ORTHO05D007327 2.9e-20 103.2 92 52.2
Solyc07g062410.4 Solanum lycopersicum HOM05D006067 ORTHO05D007327 4.9e-20 102.4 194 35.1
TPR.G11309 Trifolium pratense HOM05D006067 ORTHO05D007327 1.1e-19 101.3 120 43.3
AUR62042783 Chenopodium quinoa HOM05D006067 ORTHO05D007327 1.4e-19 100.9 115 43.5
Ca_26225_v3 Cicer arietinum L. HOM05D006067 ORTHO05D007327 1.4e-19 100.9 165 37.6
Lsat_1_v5_gn_9_99841 Lactuca sativa HOM05D006067 ORTHO05D007327 1.4e-19 100.9 179 33.5
arahy.Tifrunner.gnm1.ann1.2G52JQ Arachis hypogaea HOM05D006067 ORTHO05D007327 1.9e-19 100.5 86 51.2
Eucgr.F03271 Eucalyptus grandis HOM05D006067 ORTHO05D007327 1.9e-19 100.5 111 45.0
Hund25365 Selenicereus undatus HOM05D006067 ORTHO05D007327 1.9e-19 100.5 84 53.6
arahy.Tifrunner.gnm1.ann1.VQ55QZ Arachis hypogaea HOM05D006067 ORTHO05D007327 2.5e-19 100.1 89 49.4
CDE09G1032 Ceratophyllum demersum HOM05D001990 ORTHO05D002033 2.5e-19 100.1 155 35.5
Os06g0153600 Oryza sativa ssp. japonica HOM05D006067 ORTHO05D007327 2.5e-19 100.1 152 38.8
Solyc10g007340.3 Solanum lycopersicum HOM05D006067 ORTHO05D007327 2.5e-19 100.1 195 36.9
Sopen10g003150 Solanum pennellii HOM05D006067 ORTHO05D007327 3.2e-19 99.8 96 51.0
Sopen10g003170 Solanum pennellii HOM05D006067 ORTHO05D007327 7.1e-19 98.6 245 31.8
PGSC0003DMG400007100 Solanum tuberosum HOM05D006067 ORTHO05D007327 7.1e-19 98.6 188 35.6
Medtr0022s0280 Medicago truncatula HOM05D006067 ORTHO05D007327 1.2e-18 97.8 177 36.7
ECA240G2089 Erigeron canadensis HOM05D006067 ORTHO05D007327 6.0e-18 95.5 156 36.5
Aa31LG4G2200 Aethionema arabicum HOM05D006067 ORTHO05D007327 7.9e-18 95.1 82 52.4
ATR0012G052 Amborella trichopoda HOM05D006067 ORTHO05D007327 2.3e-17 93.6 73 58.9
AT1G78810 Arabidopsis thaliana HOM05D006067 ORTHO05D007327 3.0e-17 93.2 89 49.4
Sc16g0007610 Simmondsia chinensis HOM05D006067 ORTHO05D007327 1.5e-16 90.9 144 36.1
AL2G39210 Arabidopsis lyrata HOM05D006067 ORTHO05D007327 1.9e-16 90.5 147 39.5
SalBow1G5118 Salvia bowleyana HOM05D006067 ORTHO05D007327 2.5e-16 90.1 125 44.8
Oeu031029.1 Olea europaea HOM05D006067 ORTHO05D007327 3.3e-16 89.7 175 35.4
HPP92_012804 Vanilla planifolia HOM05D006067 ORTHO05D007327 7.4e-16 88.6 95 44.2
Carub.0002s2563 Capsella rubella HOM05D006067 ORTHO05D007327 1.3e-15 87.8 99 47.5
AUR62007119 Chenopodium quinoa HOM05D006067 ORTHO05D007327 1.3e-15 87.8 75 53.3
SHI37128 Sapria himalayana HOM05D006067 ORTHO05D007327 3.7e-15 86.3 61 62.3
THA.LOC104812320 Tarenaya hassleriana HOM05D006067 ORTHO05D007327 4.8e-15 85.9 81 49.4
BolC2t09603H Brassica oleracea HOM05D006067 ORTHO05D007327 4.1e-14 82.8 99 46.5
Sp5g33840 Schrenkiella parvula HOM05D006067 ORTHO05D007327 5.3e-14 82.4 129 41.1
C02p35900 Brassica napus HOM05D006067 ORTHO05D007327 6.9e-14 82.0 99 46.5
Hma1.2p1_0290F.1_g114870 Hydrangea macrophylla HOM05D006067 ORTHO05D007327 6.9e-14 82.0 68 52.9
Mapoly0061s0049 Marchantia polymorpha HOM05D006067 ORTHO05D007327 9.0e-14 81.6 83 44.6
Eucgr.F03267 Eucalyptus grandis HOM05D006067 ORTHO05D007327 1.2e-13 81.3 106 41.5
Thhalv10018481m.g Eutrema salsugineum HOM05D006067 ORTHO05D007327 1.2e-13 81.3 142 36.6
A02p22360 Brassica napus HOM05D006067 ORTHO05D007327 1.5e-13 80.9 99 45.5
BraA02t07240Z Brassica rapa HOM05D006067 ORTHO05D007327 1.5e-13 80.9 99 45.5
Nitab4.5_0003565g0020 Nicotiana tabacum HOM05D001990 ORTHO05D002033 1.5e-13 80.9 79 50.6
BcaB05g25155 Brassica carinata HOM05D006067 ORTHO05D007327 2.0e-13 80.5 95 46.3
CARHR072360 Cardamine hirsuta HOM05D006067 ORTHO05D007327 7.6e-13 78.6 187 33.2
PGSC0003DMG400021262 Solanum tuberosum HOM05D006067 ORTHO05D007327 2.9e-12 76.6 78 48.7
Os01g0759000 Oryza sativa ssp. japonica HOM05D006067 ORTHO05D007327 5.0e-12 75.9 81 43.2
Eucgr.F03268 Eucalyptus grandis HOM05D006067 ORTHO05D007327 2.5e-11 73.6 51 58.8
Zm00001eb152520 Zea mays HOM05D006067 ORTHO05D007327 2.5e-11 73.6 89 42.7
SEGI_27593 Sequoiadendron giganteum HOM05D006067 ORTHO05D007327 9.3e-11 71.6 154 29.9
Mapoly1798s0001 Marchantia polymorpha HOM05D006067 ORTHO05D007327 1.5e-08 64.3 62 48.4
Nitab4.5_0000383g0160 Nicotiana tabacum HOM05D006067 ORTHO05D007327 3.3e-08 63.2 105 31.4
AUR62019577 Chenopodium quinoa HOM05D006067 ORTHO05D007327 2.2e-07 60.5 206 27.7
Psat0s911g0040 Pisum sativum HOM05D006067 ORTHO05D007327 2.4e-06 57.0 43 53.5


User provided reference genes

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