Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0357221 Rosa chinensis HOM05D003847 ORTHO05D026554 2.4e-46 188.3 87 100.0
Peaxi162Scf00020g01122 Petunia axillaris HOM05D003847 ORTHO05D004976 8.1e-26 120.2 155 44.5
Haze_15549 Corylus avellana HOM05D003847 ORTHO05D004976 1.6e-21 105.9 192 35.9
Nitab4.5_0001269g0010 Nicotiana tabacum HOM05D003847 ORTHO05D004976 1.6e-21 105.9 192 35.9
Dinv43851 Davidia involucrata HOM05D003847 ORTHO05D004976 2.1e-21 105.5 192 37.0
Nitab4.5_0003779g0180 Nicotiana tabacum HOM05D003847 ORTHO05D004976 2.1e-21 105.5 192 36.5
MBI04_g26959_MAGBIO Magnolia biondii HOM05D003847 ORTHO05D004976 3.5e-21 104.8 198 35.9
Nitab4.5_0001702g0130 Nicotiana tabacum HOM05D003847 ORTHO05D004976 6.0e-21 104.0 200 34.5
Nitab4.5_0011900g0010 Nicotiana tabacum HOM05D003847 ORTHO05D004976 6.0e-21 104.0 127 44.1
ClCG05G001330 Citrullus lanatus HOM05D003847 ORTHO05D004976 7.8e-21 103.6 192 35.4
Cfa003885 Carpinus fangiana HOM05D003847 ORTHO05D004976 2.3e-20 102.1 202 34.2
SalBow5G2471 Salvia bowleyana HOM05D003847 ORTHO05D004976 6.6e-20 100.5 116 46.6
Sabra02G0147800 Salix brachista HOM05D003847 ORTHO05D004976 2.8e-18 95.1 230 30.4
Lsat_1_v5_gn_4_34641 Lactuca sativa HOM05D003847 ORTHO05D004976 3.6e-18 94.7 230 31.3
FvH4_7g15083 Fragaria vesca HOM05D003847 ORTHO05D004976 4.7e-18 94.4 230 31.7
Oeu015226.2 Olea europaea HOM05D003847 ORTHO05D004976 4.7e-18 94.4 228 32.9
RcHm_v2.0_Chr1g0357211 Rosa chinensis HOM05D003847 ORTHO05D004976 6.2e-18 94.0 230 31.7
vmacro20904 Vaccinium macrocarpon HOM05D003847 ORTHO05D004976 8.1e-18 93.6 113 45.1
Potri.002G162700 Populus trichocarpa HOM05D003847 ORTHO05D004976 1.1e-17 93.2 230 30.0
HanXRQChr17g0562361 Helianthus annuus HOM05D003847 ORTHO05D004976 1.4e-17 92.8 230 31.3
Migut.N01455 Erythranthe guttata HOM05D003847 ORTHO05D004976 1.8e-17 92.4 230 30.4
COL.COLO4_12761 Corchorus olitorius HOM05D003847 ORTHO05D004976 2.4e-17 92.0 230 30.0
Lj9C587T13 Lonicera japonica HOM05D003847 ORTHO05D004976 2.4e-17 92.0 230 30.4
MD01G1069400 Malus domestica HOM05D003847 ORTHO05D004976 2.4e-17 92.0 230 30.4
Oeu036597.2 Olea europaea HOM05D003847 ORTHO05D004976 2.4e-17 92.0 230 30.4
DCAR_025211 Daucus carota HOM05D003847 ORTHO05D004976 3.1e-17 91.7 230 30.4
Duzib133G1387 Durio zibethinus HOM05D003847 ORTHO05D004976 3.1e-17 91.7 230 30.0
FAN10G0014 Fragaria x ananassa HOM05D003847 ORTHO05D004976 3.1e-17 91.7 230 31.3
Thecc.01G354200 Theobroma cacao HOM05D003847 ORTHO05D004976 3.1e-17 91.7 230 30.0
Actinidia02826 Actinidia chinensis HOM05D003847 ORTHO05D004976 4.0e-17 91.3 230 30.4
Cc02_g38410 Coffea canephora HOM05D003847 ORTHO05D004976 4.0e-17 91.3 230 30.4
QL04p055042 Quercus lobata HOM05D003847 ORTHO05D004976 4.0e-17 91.3 229 30.1
Sabra02G0148200 Salix brachista HOM05D003847 ORTHO05D004976 4.0e-17 91.3 154 36.4
MSTRG.4846 Avicennia marina HOM05D003847 ORTHO05D004976 5.2e-17 90.9 230 29.6
Manes.05G031000 Manihot esculenta HOM05D003847 ORTHO05D004976 5.2e-17 90.9 230 29.6
FAN01G0997 Fragaria x ananassa HOM05D003847 ORTHO05D004976 6.8e-17 90.5 230 30.4
FAN03G0710 Fragaria x ananassa HOM05D003847 ORTHO05D004976 6.8e-17 90.5 230 31.3
FAN06G3510 Fragaria x ananassa HOM05D003847 ORTHO05D004976 6.8e-17 90.5 230 30.4
Potri.014G088900 Populus trichocarpa HOM05D003847 ORTHO05D004976 6.8e-17 90.5 230 29.6
EL10Ac1g00369 Beta vulgaris HOM05D003847 ORTHO05D004976 8.9e-17 90.1 231 29.4
DCAR_008629 Daucus carota HOM05D003847 ORTHO05D004976 8.9e-17 90.1 230 30.0
FAN10G1372 Fragaria x ananassa HOM05D003847 ORTHO05D004976 8.9e-17 90.1 230 30.0
FAN10G2219 Fragaria x ananassa HOM05D003847 ORTHO05D004976 8.9e-17 90.1 230 30.0
Gohir.A11G091500 Gossypium hirsutum HOM05D003847 ORTHO05D004976 8.9e-17 90.1 230 30.0
Gohir.D11G096200 Gossypium hirsutum HOM05D003847 ORTHO05D004976 8.9e-17 90.1 230 30.0
Gorai.007G102500 Gossypium raimondii HOM05D003847 ORTHO05D004976 8.9e-17 90.1 230 30.0
Hund16669 Selenicereus undatus HOM05D003847 ORTHO05D004976 8.9e-17 90.1 231 30.3
Solyc01g094930.3 Solanum lycopersicum HOM05D003847 ORTHO05D004976 8.9e-17 90.1 230 29.6
Sopen01g038710 Solanum pennellii HOM05D003847 ORTHO05D004976 8.9e-17 90.1 230 29.6
TAR375G0471 Trochodendron aralioides HOM05D003847 ORTHO05D004976 8.9e-17 90.1 230 30.0
ECA234G3268 Erigeron canadensis HOM05D003847 ORTHO05D004976 1.2e-16 89.7 230 30.4
TWI59G0695 Tripterygium wilfordii HOM05D003847 ORTHO05D004976 1.2e-16 89.7 230 30.0
PGR042G1058 Punica granatum HOM05D003847 ORTHO05D004976 1.5e-16 89.4 230 30.0
CSS0029735 Camellia sinensis var. sinensis HOM05D003847 ORTHO05D004976 2.0e-16 89.0 230 30.0
CANSAT56G2934 Cannabis sativa HOM05D003847 ORTHO05D004976 2.0e-16 89.0 230 29.6
CiPaw.01G065300 Carya illinoinensis HOM05D003847 ORTHO05D004976 2.0e-16 89.0 230 29.6
Ciclev10020054m.g Citrus clementina HOM05D003847 ORTHO05D004976 2.0e-16 89.0 227 29.5
Glyma.18G237300 Glycine max HOM05D003847 ORTHO05D004976 2.0e-16 89.0 230 29.6
arahy.Tifrunner.gnm1.ann1.9YV9D4 Arachis hypogaea HOM05D003847 ORTHO05D004976 2.6e-16 88.6 227 29.5
arahy.Tifrunner.gnm1.ann1.P1PLPP Arachis hypogaea HOM05D003847 ORTHO05D004976 2.6e-16 88.6 227 29.5
Lalb_Chr04g0259201 Lupinus albus HOM05D003847 ORTHO05D004976 2.6e-16 88.6 230 29.6
THA.LOC104825858 Tarenaya hassleriana HOM05D003847 ORTHO05D004976 2.6e-16 88.6 230 29.6
VMungo1383G0817 Vigna mungo HOM05D003847 ORTHO05D004976 2.6e-16 88.6 230 29.6
MELO3C006089.2 Cucumis melo HOM05D003847 ORTHO05D004976 3.4e-16 88.2 230 29.6
CsaV3_3G008710 Cucumis sativus L. HOM05D003847 ORTHO05D004976 3.4e-16 88.2 230 29.6
Phvul.008G059300 Phaseolus vulgaris HOM05D003847 ORTHO05D004976 3.4e-16 88.2 230 29.6
Prupe.2G175500 Prunus persica HOM05D003847 ORTHO05D004976 3.4e-16 88.2 230 29.6
RcHm_v2.0_Chr1g0357201 Rosa chinensis HOM05D003847 ORTHO05D004976 3.4e-16 88.2 230 30.0
CDE11G0931 Ceratophyllum demersum HOM05D003847 ORTHO05D004976 4.4e-16 87.8 230 29.6
Hma1.2p1_0627F.1_g191710 Hydrangea macrophylla HOM05D003847 ORTHO05D004976 4.4e-16 87.8 230 30.0
GSVIVG01026981001 Vitis vinifera HOM05D003847 ORTHO05D004976 4.4e-16 87.8 230 29.6
AUR62022605 Chenopodium quinoa HOM05D003847 ORTHO05D004976 5.8e-16 87.4 231 29.4
Glyma.09G255600 Glycine max HOM05D003847 ORTHO05D004976 5.8e-16 87.4 230 29.1
Lj1g0024026 Lotus japonicus HOM05D003847 ORTHO05D004976 5.8e-16 87.4 230 30.0
PSO478G2530 Papaver somniferum HOM05D003847 ORTHO05D004976 5.8e-16 87.4 227 29.1
PSO782G0912 Papaver somniferum HOM05D003847 ORTHO05D004976 5.8e-16 87.4 227 29.1
Sabra14G0064600 Salix brachista HOM05D003847 ORTHO05D004976 7.6e-16 87.0 230 29.1
TAR629G0433 Trochodendron aralioides HOM05D003847 ORTHO05D004976 7.6e-16 87.0 230 29.1
CAN.G78.110 Capsicum annuum HOM05D003847 ORTHO05D004976 9.9e-16 86.7 230 29.6
CDE09G0314 Ceratophyllum demersum HOM05D003847 ORTHO05D004976 1.3e-15 86.3 230 29.1
Nn1g01640 Nelumbo nucifera HOM05D003847 ORTHO05D004976 1.3e-15 86.3 230 28.7
Sed0007018 Sechium edule HOM05D003847 ORTHO05D004976 1.3e-15 86.3 230 28.7
Ca_00820_v3 Cicer arietinum L. HOM05D003847 ORTHO05D004976 1.7e-15 85.9 226 29.6
THA.LOC104817033 Tarenaya hassleriana HOM05D003847 ORTHO05D004976 1.7e-15 85.9 227 29.5
FAN03G1748 Fragaria x ananassa HOM05D003847 ORTHO05D004976 2.2e-15 85.5 154 35.1
SEGI_36957 Sequoiadendron giganteum HOM05D003847 ORTHO05D004976 2.2e-15 85.5 227 28.6
TPR.G22298 Trifolium pratense HOM05D003847 ORTHO05D004976 2.2e-15 85.5 230 30.0
Sc26g0000820 Simmondsia chinensis HOM05D003847 ORTHO05D004976 2.9e-15 85.1 230 28.7
Aqoxy5G04080 Aquilegia oxysepala HOM05D003847 ORTHO05D004976 4.9e-15 84.3 229 30.1
Medtr7g078760 Medicago truncatula HOM05D003847 ORTHO05D004976 4.9e-15 84.3 226 29.6
AUR62004399 Chenopodium quinoa HOM05D003847 ORTHO05D004976 8.4e-15 83.6 231 28.6
arahy.Tifrunner.gnm1.ann1.U13Q33 Arachis hypogaea HOM05D003847 ORTHO05D004976 1.1e-14 83.2 227 30.0
arahy.Tifrunner.gnm1.ann1.W45FS6 Arachis hypogaea HOM05D003847 ORTHO05D004976 1.1e-14 83.2 227 30.0
Zm00001eb187240 Zea mays HOM05D003847 ORTHO05D004976 1.1e-14 83.2 229 28.8
AL6G52080 Arabidopsis lyrata HOM05D003847 ORTHO05D004976 1.4e-14 82.8 230 28.7
AT4G01320 Arabidopsis thaliana HOM05D003847 ORTHO05D004976 1.4e-14 82.8 230 28.7
BcaB01g02281 Brassica carinata HOM05D003847 ORTHO05D004976 1.4e-14 82.8 230 28.7
BcaC04g24142 Brassica carinata HOM05D003847 ORTHO05D004976 1.4e-14 82.8 230 28.7
A09p00040 Brassica napus HOM05D003847 ORTHO05D004976 1.4e-14 82.8 230 28.7
C09p00660 Brassica napus HOM05D003847 ORTHO05D004976 1.4e-14 82.8 230 28.7
BolC9t53000H Brassica oleracea HOM05D003847 ORTHO05D004976 1.4e-14 82.8 230 28.7
BraA09t35735Z Brassica rapa HOM05D003847 ORTHO05D004976 1.4e-14 82.8 230 28.7
CARHR249000 Cardamine hirsuta HOM05D003847 ORTHO05D004976 1.4e-14 82.8 230 28.7
Thhalv10028603m.g Eutrema salsugineum HOM05D003847 ORTHO05D004976 1.4e-14 82.8 230 28.7
SGA_v2.0_scaffold43G16402 Striga asiatica HOM05D003847 ORTHO05D004976 1.4e-14 82.8 230 29.1
HPP92_022235 Vanilla planifolia HOM05D003847 ORTHO05D004976 1.4e-14 82.8 229 29.3
Pp3c12_25070 Physcomitrium patens HOM05D003847 ORTHO05D004976 1.9e-14 82.4 154 33.8
RcHm_v2.0_Chr1g0357271 Rosa chinensis HOM05D003847 ORTHO05D004976 1.9e-14 82.4 227 28.6
BcaC01g06856 Brassica carinata HOM05D003847 ORTHO05D004976 2.4e-14 82.0 230 28.7
C03p39000 Brassica napus HOM05D003847 ORTHO05D004976 2.4e-14 82.0 230 28.7
BolC3t16172H Brassica oleracea HOM05D003847 ORTHO05D004976 2.4e-14 82.0 230 28.7
Os02g0680400 Oryza sativa ssp. japonica HOM05D003847 ORTHO05D004976 2.4e-14 82.0 229 27.1
TAR636G3069 Trochodendron aralioides HOM05D003847 ORTHO05D004976 2.4e-14 82.0 230 28.3
Carub.0006s3638 Capsella rubella HOM05D003847 ORTHO05D004976 5.4e-14 80.9 230 28.3
Atru.chr5.1381 Acer truncatum HOM05D003847 ORTHO05D004976 7.1e-14 80.5 235 27.7
AagrBONN_evm.TU.Sc2ySwM_344.5530 Anthoceros agrestis HOM05D003847 ORTHO05D004976 7.1e-14 80.5 230 28.3
BcaB01g02153 Brassica carinata HOM05D003847 ORTHO05D004976 7.1e-14 80.5 230 28.3
BraA03t12370Z Brassica rapa HOM05D003847 ORTHO05D004976 7.1e-14 80.5 230 28.3
FAN06G0785 Fragaria x ananassa HOM05D003847 ORTHO05D004976 7.1e-14 80.5 227 28.2
Eucgr.D02317 Eucalyptus grandis HOM05D003847 ORTHO05D004976 9.2e-14 80.1 230 29.6
A03p31980 Brassica napus HOM05D003847 ORTHO05D004976 1.2e-13 79.7 230 28.3
Sp6g00820 Schrenkiella parvula HOM05D003847 ORTHO05D004976 1.2e-13 79.7 230 28.3
ATR0661G289 Amborella trichopoda HOM05D003847 ORTHO05D004976 1.6e-13 79.3 227 28.2
Pp3c4_3300 Physcomitrium patens HOM05D003847 ORTHO05D004976 2.1e-13 79.0 230 27.4
Cpa.g.sc184.22 Carica papaya HOM05D003847 ORTHO05D004976 3.5e-13 78.2 150 32.7
FvH4_7g15084 Fragaria vesca HOM05D003847 ORTHO05D004976 3.5e-13 78.2 227 27.3
Hund27252 Selenicereus undatus HOM05D003847 ORTHO05D004976 4.6e-13 77.8 152 32.9
SMO364G0773 Selaginella moellendorffii HOM05D003847 ORTHO05D004976 6.0e-13 77.4 154 31.8
MSTRG.28227 Avicennia marina HOM05D003847 ORTHO05D004976 1.3e-12 76.3 230 27.8
FAN06G4922 Fragaria x ananassa HOM05D003847 ORTHO05D004976 2.3e-12 75.5 224 27.7
Duzib138G0396 Durio zibethinus HOM05D003847 ORTHO05D004976 8.7e-12 73.6 40 82.5
HanXRQChr16g0521851 Helianthus annuus HOM05D003847 ORTHO05D004976 8.7e-12 73.6 158 32.3
FAN06G4494 Fragaria x ananassa HOM05D003847 ORTHO05D004976 1.5e-11 72.8 221 27.1
FAN10G3432 Fragaria x ananassa HOM05D003847 ORTHO05D004976 2.5e-11 72.0 200 28.0
vmacro04325 Vaccinium macrocarpon HOM05D003847 ORTHO05D004976 3.3e-11 71.6 113 37.2
CBR_g23782 Chara braunii HOM05D003847 ORTHO05D004976 5.6e-11 70.9 225 26.2
FAN10G3576 Fragaria x ananassa HOM05D003847 ORTHO05D004976 5.6e-11 70.9 148 31.8
Mapoly0151s0045 Marchantia polymorpha HOM05D003847 ORTHO05D004976 5.6e-11 70.9 230 27.0
ATR0763G219 Amborella trichopoda HOM05D003847 ORTHO05D026554 1.3e-10 69.7 37 81.1
FAN10G2623 Fragaria x ananassa HOM05D003847 ORTHO05D004976 9.0e-09 63.5 222 25.2
Mapoly1163s0001 Marchantia polymorpha HOM05D003847 ORTHO05D026554 2.6e-08 62.0 40 67.5
QL12p031965 Quercus lobata HOM05D003847 ORTHO05D004976 5.8e-08 60.8 155 25.8
Aa31LG5G720 Aethionema arabicum HOM05D003847 ORTHO05D004976 9.9e-08 60.1 115 31.3
FvH4_7g15081 Fragaria vesca HOM05D003847 ORTHO05D004976 9.9e-08 60.1 104 36.5
Dinv32510 Davidia involucrata HOM05D003847 ORTHO05D004976 1.3e-07 59.7 104 36.5
Psat3g106680 Pisum sativum HOM05D003847 ORTHO05D004976 1.3e-07 59.7 101 36.6
Atru.chr5.547 Acer truncatum HOM05D003847 ORTHO05D004976 3.8e-07 58.2 104 35.6
Medtr8g028680 Medicago truncatula HOM05D003847 ORTHO05D004976 4.9e-07 57.8 153 29.4
HanXRQChr16g0521861 Helianthus annuus HOM05D003847 ORTHO05D004976 6.4e-07 57.4 40 62.5
Sed0024082 Sechium edule HOM05D003847 ORTHO05D004976 1.4e-06 56.2 104 34.6
Cre07.g356150 Chlamydomonas reinhardtii HOM05D003847 ORTHO05D004976 1.9e-06 55.8 31 74.2
FAN01G2116 Fragaria x ananassa HOM05D003847 ORTHO05D004976 1.9e-06 55.8 32 71.9
Lsat_1_v5_gn_9_59821 Lactuca sativa HOM05D000726 ORTHO05D025737 3.2e-06 55.1 27 81.5
Lsat_1_v5_gn_2_83340 Lactuca sativa HOM05D003847 ORTHO05D028506 9.3e-06 53.5 23 91.3
Lsat_1_v5_gn_3_43021 Lactuca sativa HOM05D003847 ORTHO05D028506 9.3e-06 53.5 23 91.3
PRCOL_00003828 Prasinoderma coloniale HOM05D003847 ORTHO05D004976 9.3e-06 53.5 40 60.0


User provided reference genes

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