Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0357021 Rosa chinensis HOM05D006343 ORTHO05D005694 1.1e-164 583.2 293 100.0
FAN10G3829 Fragaria x ananassa HOM05D006343 ORTHO05D005694 6.1e-134 481.1 297 83.5
FAN10G0914 Fragaria x ananassa HOM05D006343 ORTHO05D005694 7.9e-134 480.7 297 83.5
FAN01G0301 Fragaria x ananassa HOM05D006343 ORTHO05D005694 5.1e-133 478.0 299 81.9
FAN03G1905 Fragaria x ananassa HOM05D006343 ORTHO05D005694 1.4e-127 459.9 298 80.5
FAN06G0921 Fragaria x ananassa HOM05D006343 ORTHO05D005694 1.0e-125 453.8 297 79.1
FvH4_7g14980 Fragaria vesca HOM05D006343 ORTHO05D005694 3.0e-125 452.2 297 78.8
FAN10G3557 Fragaria x ananassa HOM05D006343 ORTHO05D005694 3.1e-53 213.0 307 47.6
FAN03G1311 Fragaria x ananassa HOM05D006343 ORTHO05D005694 9.0e-53 211.5 303 48.2
FvH4_7g14870 Fragaria vesca HOM05D006343 ORTHO05D005694 7.6e-52 208.4 290 45.9
FAN10G3545 Fragaria x ananassa HOM05D006343 ORTHO05D005694 2.4e-50 203.4 344 42.7
FAN06G4353 Fragaria x ananassa HOM05D006343 ORTHO05D005694 4.2e-50 202.6 292 45.9
FAN06G0140 Fragaria x ananassa HOM05D006343 ORTHO05D005694 1.3e-48 197.6 288 45.1
Manes.01G254700 Manihot esculenta HOM05D006343 ORTHO05D005694 5.8e-44 182.2 321 39.3
CiPaw.02G033200 Carya illinoinensis HOM05D006343 ORTHO05D005694 4.6e-41 172.6 323 39.3
Potri.002G161700 Populus trichocarpa HOM05D006343 ORTHO05D005694 1.8e-40 170.6 318 37.7
Ciclev10021525m.g Citrus clementina HOM05D006343 ORTHO05D005694 5.1e-40 169.1 313 39.0
Sabra14G0063500 Salix brachista HOM05D006343 ORTHO05D005694 6.2e-38 162.2 323 38.1
Manes.05G031900 Manihot esculenta HOM05D006343 ORTHO05D005694 3.1e-37 159.8 320 38.8
Potri.014G087500 Populus trichocarpa HOM05D006343 ORTHO05D005694 4.5e-36 156.0 317 37.5
Sabra02G0128600 Salix brachista HOM05D006343 ORTHO05D005694 1.0e-35 154.8 315 37.5
CANSAT56G2487 Cannabis sativa HOM05D006343 ORTHO05D005694 3.8e-35 152.9 330 37.0
Prupe.2G173800 Prunus persica HOM05D006343 ORTHO05D005694 4.2e-34 149.4 316 38.9
Dinv43841 Davidia involucrata HOM05D006343 ORTHO05D005694 1.2e-33 147.9 289 38.8
Actinidia20887 Actinidia chinensis HOM05D006343 ORTHO05D005694 2.1e-33 147.1 294 37.8
MD01G1067400 Malus domestica HOM05D006343 ORTHO05D005694 1.0e-32 144.8 321 39.3
CiPaw.01G064000 Carya illinoinensis HOM05D006343 ORTHO05D005694 5.1e-32 142.5 323 35.3
Glyma.07G068200 Glycine max HOM05D006343 ORTHO05D005694 1.1e-31 141.4 315 34.9
FAN03G2349 Fragaria x ananassa HOM05D006343 ORTHO05D005694 1.9e-31 140.6 74 90.5
Rhsim01G0164400 Rhododendron simsii HOM05D006343 ORTHO05D005694 5.7e-31 139.0 305 34.4
Dinv32502 Davidia involucrata HOM05D006343 ORTHO05D005694 6.2e-30 135.6 242 39.3
Atru.chr5.528 Acer truncatum HOM05D006343 ORTHO05D005694 1.1e-29 134.8 313 34.5
MSTRG.18339 Avicennia marina HOM05D006343 ORTHO05D005694 9.0e-29 131.7 298 34.9
SalBow6G3791 Salvia bowleyana HOM05D006343 ORTHO05D005694 9.0e-29 131.7 304 34.2
FAN01G2602 Fragaria x ananassa HOM05D006343 ORTHO05D005694 2.0e-28 130.6 225 41.3
MD07G1133500 Malus domestica HOM05D006343 ORTHO05D005694 2.6e-28 130.2 311 35.7
Oeu035725.1 Olea europaea HOM05D003054 ORTHO05D003376 4.5e-28 129.4 243 37.0
Oeu055797.1 Olea europaea HOM05D006343 ORTHO05D005694 5.8e-28 129.0 316 32.9
QL04p054168 Quercus lobata HOM05D006343 ORTHO05D005694 1.7e-27 127.5 235 37.0
CsaV3_6G000720 Cucumis sativus L. HOM05D006343 ORTHO05D005694 8.4e-27 125.2 307 35.5
Hma1.2p1_0702F.1_g206150 Hydrangea macrophylla HOM05D006343 ORTHO05D005694 1.4e-26 124.4 312 32.7
FAN06G3406 Fragaria x ananassa HOM05D006343 ORTHO05D005694 3.2e-26 123.2 99 65.7
TAR629G3314 Trochodendron aralioides HOM05D006343 ORTHO05D005694 3.2e-26 123.2 318 32.7
Glyma.16G034200 Glycine max HOM05D006343 ORTHO05D005694 7.1e-26 122.1 325 32.3
MSTRG.12522 Avicennia marina HOM05D006343 ORTHO05D005694 1.2e-25 121.3 304 32.2
Duzib138G0695 Durio zibethinus HOM05D006343 ORTHO05D005694 2.1e-25 120.6 295 36.6
vmacro20912 Vaccinium macrocarpon HOM05D006343 ORTHO05D005694 4.6e-25 119.4 319 34.8
GSVIVG01026998001 Vitis vinifera HOM05D006343 ORTHO05D005694 4.6e-25 119.4 316 31.0
FAN10G1634 Fragaria x ananassa HOM05D006343 ORTHO05D005694 7.9e-25 118.6 300 34.0
FAN10G3360 Fragaria x ananassa HOM05D006343 ORTHO05D005694 1.0e-24 118.2 307 33.2
Oeu035719.1 Olea europaea HOM05D003054 ORTHO05D003376 1.0e-24 118.2 249 34.1
Oeu035731.1 Olea europaea HOM05D006343 ORTHO05D005694 3.0e-24 116.7 319 32.3
vmacro20913 Vaccinium macrocarpon HOM05D006343 ORTHO05D005694 1.5e-23 114.4 323 33.4
FvH4_7g14880 Fragaria vesca HOM05D006343 ORTHO05D005694 1.9e-23 114.0 304 32.2
FAN06G3127 Fragaria x ananassa HOM05D006343 ORTHO05D005694 1.9e-23 114.0 305 32.1
Rhsim01G0164000 Rhododendron simsii HOM05D006343 ORTHO05D005694 3.3e-23 113.2 317 32.8
Phvul.010G101000 Phaseolus vulgaris HOM05D006343 ORTHO05D005694 7.4e-23 112.1 303 33.3
VMungo0331G0061 Vigna mungo HOM05D006343 ORTHO05D005694 2.2e-22 110.5 298 31.9
CSS0004449 Camellia sinensis var. sinensis HOM05D006343 ORTHO05D005694 2.8e-22 110.2 296 33.4
Lalb_Chr17g0339411 Lupinus albus HOM05D006343 ORTHO05D005694 2.8e-22 110.2 234 35.5
COL.COLO4_12739 Corchorus olitorius HOM05D006343 ORTHO05D005694 1.4e-21 107.8 300 35.0
Oeu035722.1 Olea europaea HOM05D006343 ORTHO05D005694 2.4e-21 107.1 318 31.8
Nitab4.5_0001655g0110 Nicotiana tabacum HOM05D006343 ORTHO05D005694 3.1e-21 106.7 346 29.2
Gorai.007G101600 Gossypium raimondii HOM05D006343 ORTHO05D005694 9.0e-21 105.1 292 37.0
Cfa003895 Carpinus fangiana HOM05D006343 ORTHO05D005694 3.4e-20 103.2 285 33.7
Lsat_1_v5_gn_7_4060 Lactuca sativa HOM05D006343 ORTHO05D005694 1.3e-19 101.3 311 31.8
Sed0018743 Sechium edule HOM05D006343 ORTHO05D005694 1.3e-19 101.3 301 34.9
Nitab4.5_0003369g0030 Nicotiana tabacum HOM05D006343 ORTHO05D005694 3.8e-19 99.8 318 30.8
DCAR_015701 Daucus carota HOM05D006343 ORTHO05D005694 8.5e-19 98.6 293 31.7
Gohir.D11G095300 Gossypium hirsutum HOM05D006343 ORTHO05D005694 8.5e-19 98.6 295 33.2
Lsat_1_v5_gn_7_4100 Lactuca sativa HOM05D006343 ORTHO05D005694 1.4e-18 97.8 302 30.8
Cc02_g38320 Coffea canephora HOM05D006343 ORTHO05D005694 3.2e-18 96.7 322 29.5
DCAR_015699 Daucus carota HOM05D006343 ORTHO05D005694 4.2e-18 96.3 252 37.7
Eucgr.I00992 Eucalyptus grandis HOM05D006343 ORTHO05D005694 4.2e-18 96.3 325 31.4
Nitab4.5_0001040g0020 Nicotiana tabacum HOM05D006343 ORTHO05D005694 4.2e-18 96.3 343 28.3
CAN.G650.35 Capsicum annuum HOM05D006343 ORTHO05D005694 7.2e-18 95.5 326 30.4
Rhsim06G0236200 Rhododendron simsii HOM05D006343 ORTHO05D005694 9.4e-18 95.1 302 30.5
Nn1g01591 Nelumbo nucifera HOM05D006343 ORTHO05D005694 2.1e-17 94.0 322 29.5
CAN.G2424.1 Capsicum annuum HOM05D006343 ORTHO05D005694 6.1e-17 92.4 356 28.7
MELO3C021196.2 Cucumis melo HOM05D006343 ORTHO05D005694 1.0e-16 91.7 309 31.4
Nitab4.5_0002749g0010 Nicotiana tabacum HOM05D006343 ORTHO05D005694 1.0e-16 91.7 318 29.6
THA.LOC104825850 Tarenaya hassleriana HOM05D012121 ORTHO05D005694 1.4e-16 91.3 327 29.1
CAN.G650.25 Capsicum annuum HOM05D006343 ORTHO05D005694 1.8e-16 90.9 319 27.9
TWI23G0998 Tripterygium wilfordii HOM05D006343 ORTHO05D005694 3.9e-16 89.7 300 32.3
BcaB01g02239 Brassica carinata HOM05D012121 ORTHO05D005694 1.5e-15 87.8 327 29.1
CAN.G650.32 Capsicum annuum HOM05D006343 ORTHO05D005694 4.3e-15 86.3 329 28.9
SGA_v2.0_scaffold1G00635 Striga asiatica HOM05D006343 ORTHO05D005694 5.7e-15 85.9 356 27.5
Thecc.01G356100 Theobroma cacao HOM05D006343 ORTHO05D005694 5.7e-15 85.9 223 32.3
Lj3g0021957 Lotus japonicus HOM05D006343 ORTHO05D005694 1.3e-14 84.7 232 32.3
Thhalv10028840m.g Eutrema salsugineum HOM05D012121 ORTHO05D005694 2.8e-14 83.6 327 30.3
CAN.G650.28 Capsicum annuum HOM05D006343 ORTHO05D005694 3.7e-14 83.2 240 28.3
Sp6g00380 Schrenkiella parvula HOM05D012121 ORTHO05D005694 3.7e-14 83.2 325 28.6
unitig_22.g5289 Utricularia gibba HOM05D006343 ORTHO05D005694 8.2e-14 82.0 297 28.3
Haze_15537 Corylus avellana HOM05D006343 ORTHO05D005694 1.4e-13 81.3 285 30.9
Medtr3g015950 Medicago truncatula HOM05D006343 ORTHO05D005694 1.4e-13 81.3 295 30.8
Cpa.g.sc11.35 Carica papaya HOM05D006343 ORTHO05D005694 2.4e-13 80.5 316 30.7
Medtr8g028845 Medicago truncatula HOM05D006343 ORTHO05D005694 3.1e-13 80.1 289 29.8
PGR042G0313 Punica granatum HOM05D006343 ORTHO05D005694 4.1e-13 79.7 183 32.8
Migut.D00457 Erythranthe guttata HOM05D006343 ORTHO05D005694 2.6e-12 77.0 104 39.4
Duzib133G0920 Durio zibethinus HOM05D006343 ORTHO05D005694 3.4e-12 76.6 298 29.2
Solyc02g070700.3 Solanum lycopersicum HOM05D006343 ORTHO05D005694 3.4e-12 76.6 251 25.5
Potri.014G099800 Populus trichocarpa HOM05D006343 ORTHO05D005694 4.5e-12 76.3 247 30.8
CARHR248400 Cardamine hirsuta HOM05D012121 ORTHO05D005694 1.0e-11 75.1 330 27.0
Oeu035728.1 Olea europaea HOM05D006343 ORTHO05D005694 1.0e-11 75.1 295 29.8
PSO478G4526 Papaver somniferum HOM05D020029 ORTHO05D005694 1.3e-11 74.7 208 30.8
Aqoxy7G00256 Aquilegia oxysepala HOM05D006343 ORTHO05D005694 5.0e-11 72.8 343 25.7
Sopen02g019780 Solanum pennellii HOM05D006343 ORTHO05D005694 5.0e-11 72.8 320 24.7
BcaC04g24184 Brassica carinata HOM05D012121 ORTHO05D005694 6.5e-11 72.4 330 28.2
BolC9t52962H Brassica oleracea HOM05D012121 ORTHO05D005694 6.5e-11 72.4 330 28.2
C09p00270 Brassica napus HOM05D012121 ORTHO05D005694 8.5e-11 72.0 332 28.0
TWI14G1134 Tripterygium wilfordii HOM05D006343 ORTHO05D005694 1.1e-10 71.6 298 28.2
ECA233G1044 Erigeron canadensis HOM05D006343 ORTHO05D005694 3.2e-10 70.1 300 26.0
Gohir.D08G153300 Gossypium hirsutum HOM05D006343 ORTHO05D005694 5.5e-10 69.3 288 26.4
EL10Ac1g00388 Beta vulgaris HOM05D029301 ORTHO05D005694 7.2e-10 68.9 121 41.3
CDE06G1281 Ceratophyllum demersum HOM05D006343 ORTHO05D005694 7.2e-10 68.9 117 35.0
ClCG06G003540 Citrullus lanatus HOM05D006343 ORTHO05D005694 9.4e-10 68.6 310 28.4
Actinidia10044 Actinidia chinensis HOM05D006343 ORTHO05D005694 2.7e-09 67.0 132 37.9
CDE02G1832 Ceratophyllum demersum HOM05D006343 ORTHO05D005694 3.6e-09 66.6 200 25.5
AT4G00310 Arabidopsis thaliana HOM05D012121 ORTHO05D005694 1.4e-08 64.7 331 25.1
AL6G53170 Arabidopsis lyrata HOM05D012121 ORTHO05D005694 1.8e-08 64.3 326 26.7
Gorai.004G159200 Gossypium raimondii HOM05D006343 ORTHO05D005694 5.1e-08 62.8 107 38.3
unitig_8.g3737 Utricularia gibba HOM05D006343 ORTHO05D005694 5.1e-08 62.8 324 24.7
Solyc03g095830.3 Solanum lycopersicum HOM05D064734 ORTHO05D005694 6.7e-08 62.4 227 26.9
PSO782G0031 Papaver somniferum HOM05D020029 ORTHO05D005694 2.6e-07 60.5 217 29.0
Sc01g0003550 Simmondsia chinensis HOM05D006343 ORTHO05D005694 3.3e-07 60.1 299 28.1
Carub.0006s3693 Capsella rubella HOM05D012121 ORTHO05D005694 4.4e-07 59.7 320 25.6
PSO782G1271 Papaver somniferum HOM05D020029 ORTHO05D005694 7.4e-07 58.9 192 25.5
Gohir.A08G131933 Gossypium hirsutum HOM05D006343 ORTHO05D005694 1.7e-06 57.8 107 36.4
Gohir.A11G090700 Gossypium hirsutum HOM05D006343 ORTHO05D005694 4.8e-06 56.2 295 27.5


User provided reference genes

Program Settings