Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0356911 Rosa chinensis HOM05D004297 ORTHO05D005213 1.3e-23 112.1 50 100.0
CSS0008006 Camellia sinensis var. sinensis HOM05D004297 ORTHO05D005213 3.2e-11 70.9 34 82.4
Cpa.g.sc11.37 Carica papaya HOM05D004297 ORTHO05D005213 3.2e-11 70.9 34 82.4
FvH4_5g28900 Fragaria vesca HOM05D004297 ORTHO05D005213 3.2e-11 70.9 34 82.4
FAN08G3284 Fragaria x ananassa HOM05D004297 ORTHO05D005213 3.2e-11 70.9 34 82.4
FAN18G0188 Fragaria x ananassa HOM05D004297 ORTHO05D005213 3.2e-11 70.9 34 82.4
MD01G1067900 Malus domestica HOM05D004297 ORTHO05D005213 3.2e-11 70.9 34 82.4
MD11G1239500 Malus domestica HOM05D004297 ORTHO05D005213 3.2e-11 70.9 34 82.4
Prupe.2G174200 Prunus persica HOM05D004297 ORTHO05D005213 3.2e-11 70.9 34 82.4
RcHm_v2.0_Chr7g0221211 Rosa chinensis HOM05D004297 ORTHO05D005213 3.2e-11 70.9 34 82.4
Carub.0005s2817 Capsella rubella HOM05D004297 ORTHO05D005213 4.2e-11 70.5 34 82.4
Thhalv10005756m.g Eutrema salsugineum HOM05D004297 ORTHO05D005213 4.2e-11 70.5 34 82.4
FAN13G2415 Fragaria x ananassa HOM05D004297 ORTHO05D005213 4.2e-11 70.5 34 79.4
AL5G43780 Arabidopsis lyrata HOM05D004297 ORTHO05D005213 5.5e-11 70.1 34 82.4
AL5G43840 Arabidopsis lyrata HOM05D004297 ORTHO05D005213 5.5e-11 70.1 34 82.4
AT3G61480 Arabidopsis thaliana HOM05D004297 ORTHO05D005213 5.5e-11 70.1 34 82.4
AT5G28350 Arabidopsis thaliana HOM05D004297 ORTHO05D005213 5.5e-11 70.1 34 82.4
CARHR171820 Cardamine hirsuta HOM05D004297 ORTHO05D005213 5.5e-11 70.1 34 82.4
Sp5g01920 Schrenkiella parvula HOM05D004297 ORTHO05D005213 5.5e-11 70.1 34 82.4
Aqoxy5G04078 Aquilegia oxysepala HOM05D004297 ORTHO05D005213 9.4e-11 69.3 34 79.4
Sabra14G0063700 Salix brachista HOM05D004297 ORTHO05D005213 9.4e-11 69.3 34 82.4
SalBow3G3037 Salvia bowleyana HOM05D004297 ORTHO05D005213 9.4e-11 69.3 34 79.4
TAR636G0349 Trochodendron aralioides HOM05D004297 ORTHO05D005213 9.4e-11 69.3 48 58.3
HPP92_012695 Vanilla planifolia HOM05D004297 ORTHO05D005213 9.4e-11 69.3 48 56.2
CSS0030491 Camellia sinensis var. sinensis HOM05D004297 ORTHO05D005213 1.2e-10 68.9 34 79.4
PGR042G3632 Punica granatum HOM05D004297 ORTHO05D005213 1.2e-10 68.9 34 79.4
ATR0661G292 Amborella trichopoda HOM05D004297 ORTHO05D005213 1.6e-10 68.6 34 79.4
BcaC07g40648 Brassica carinata HOM05D004297 ORTHO05D005213 1.6e-10 68.6 34 79.4
Lj9C586G6 Lonicera japonica HOM05D004297 ORTHO05D005213 1.6e-10 68.6 34 79.4
MSTRG.17286 Avicennia marina HOM05D004297 ORTHO05D005213 2.1e-10 68.2 34 79.4
Cc02_g38370 Coffea canephora HOM05D004297 ORTHO05D005213 2.1e-10 68.2 34 79.4
Dinv32504 Davidia involucrata HOM05D004297 ORTHO05D005213 2.1e-10 68.2 34 79.4
Dinv43843 Davidia involucrata HOM05D004297 ORTHO05D005213 2.1e-10 68.2 34 79.4
Migut.B01779 Erythranthe guttata HOM05D004297 ORTHO05D005213 2.1e-10 68.2 34 79.4
Manes.01G254400 Manihot esculenta HOM05D004297 ORTHO05D005213 2.1e-10 68.2 34 79.4
PSO063G5582 Papaver somniferum HOM05D004297 ORTHO05D005213 2.1e-10 68.2 34 79.4
Rhsim07G0012700 Rhododendron simsii HOM05D004297 ORTHO05D005213 2.1e-10 68.2 34 79.4
SGA_v2.0_scaffold78G25411 Striga asiatica HOM05D004297 ORTHO05D005213 2.1e-10 68.2 34 79.4
TAR629G2795 Trochodendron aralioides HOM05D004297 ORTHO05D005213 2.1e-10 68.2 34 79.4
vmacro13256 Vaccinium macrocarpon HOM05D004297 ORTHO05D005213 2.1e-10 68.2 34 79.4
GSVIVG01026995001 Vitis vinifera HOM05D004297 ORTHO05D005213 2.1e-10 68.2 34 79.4
CANSAT56G3337 Cannabis sativa HOM05D004297 ORTHO05D005213 2.7e-10 67.8 34 76.5
THA.LOC104817308 Tarenaya hassleriana HOM05D004297 ORTHO05D005213 2.7e-10 67.8 34 76.5
AUR62004390 Chenopodium quinoa HOM05D004297 ORTHO05D005213 3.6e-10 67.4 34 79.4
AUR62022597 Chenopodium quinoa HOM05D004297 ORTHO05D005213 3.6e-10 67.4 34 79.4
Haze_15540 Corylus avellana HOM05D004297 ORTHO05D005213 3.6e-10 67.4 34 76.5
Potri.014G087900 Populus trichocarpa HOM05D004297 ORTHO05D005213 3.6e-10 67.4 34 76.5
Hund27256 Selenicereus undatus HOM05D004297 ORTHO05D005213 3.6e-10 67.4 34 79.4
EL10Ac1g00379 Beta vulgaris HOM05D004297 ORTHO05D005213 4.7e-10 67.0 34 79.4
CiPaw.01G064500 Carya illinoinensis HOM05D004297 ORTHO05D005213 4.7e-10 67.0 48 56.2
CiPaw.02G033500 Carya illinoinensis HOM05D004297 ORTHO05D005213 4.7e-10 67.0 34 73.5
Sc23g0002720 Simmondsia chinensis HOM05D004297 ORTHO05D005213 4.7e-10 67.0 34 79.4
Atru.chr5.535 Acer truncatum HOM05D004297 ORTHO05D005213 6.1e-10 66.6 34 76.5
Oeu036598.1 Olea europaea HOM05D004297 ORTHO05D005213 6.1e-10 66.6 34 76.5
Sabra02G0129100 Salix brachista HOM05D004297 ORTHO05D005213 6.1e-10 66.6 34 76.5
HanXRQChr04g0121341 Helianthus annuus HOM05D004297 ORTHO05D005213 1.0e-09 65.9 34 73.5
Lsat_1_v5_gn_7_3220 Lactuca sativa HOM05D004297 ORTHO05D005213 1.0e-09 65.9 34 73.5
DCAR_006941 Daucus carota HOM05D004297 ORTHO05D005213 1.4e-09 65.5 34 73.5
Hma1.2p1_0071F.1_g037770 Hydrangea macrophylla HOM05D004297 ORTHO05D005213 1.4e-09 65.5 34 76.5
Hma1.2p1_0071F.1_g037780 Hydrangea macrophylla HOM05D004297 ORTHO05D005213 1.4e-09 65.5 34 76.5
Actinidia10047 Actinidia chinensis HOM05D004297 ORTHO05D005213 1.8e-09 65.1 34 76.5
Actinidia20884 Actinidia chinensis HOM05D004297 ORTHO05D005213 1.8e-09 65.1 34 76.5
Cfa003893 Carpinus fangiana HOM05D004297 ORTHO05D005213 1.8e-09 65.1 34 73.5
Nitab4.5_0006942g0020 Nicotiana tabacum HOM05D004297 ORTHO05D005213 1.8e-09 65.1 34 76.5
Peaxi162Scf00020g01027 Petunia axillaris HOM05D004297 ORTHO05D005213 1.8e-09 65.1 34 76.5
Sed0013986 Sechium edule HOM05D004297 ORTHO05D005213 1.8e-09 65.1 34 76.5
Aa31LG1G27480 Aethionema arabicum HOM05D004297 ORTHO05D005213 2.3e-09 64.7 34 76.5
Ciclev10018597m.g Citrus clementina HOM05D004297 ORTHO05D005213 2.3e-09 64.7 34 73.5
ECA236G0245 Erigeron canadensis HOM05D004297 ORTHO05D005213 2.3e-09 64.7 34 70.6
Phvul.008G060200 Phaseolus vulgaris HOM05D004297 ORTHO05D005213 2.3e-09 64.7 34 73.5
Potri.002G162000 Populus trichocarpa HOM05D004297 ORTHO05D005213 2.3e-09 64.7 34 73.5
Zm00001eb257250 Zea mays HOM05D004297 ORTHO05D005213 2.3e-09 64.7 34 73.5
Duzib133G0964 Durio zibethinus HOM05D004297 ORTHO05D005213 3.0e-09 64.3 34 76.5
Nn6g33322 Nelumbo nucifera HOM05D004297 ORTHO05D005213 3.0e-09 64.3 34 76.5
Os02g0786000 Oryza sativa ssp. japonica HOM05D004297 ORTHO05D005213 3.0e-09 64.3 34 73.5
Thecc.01G355600 Theobroma cacao HOM05D004297 ORTHO05D005213 3.0e-09 64.3 34 76.5
ClCG06G003500 Citrullus lanatus HOM05D004297 ORTHO05D005213 3.9e-09 63.9 34 73.5
MELO3C021189.2 Cucumis melo HOM05D004297 ORTHO05D005213 3.9e-09 63.9 34 73.5
CsaV3_6G000810 Cucumis sativus L. HOM05D004297 ORTHO05D005213 3.9e-09 63.9 34 73.5
Zm00001eb192800 Zea mays HOM05D004297 ORTHO05D005213 3.9e-09 63.9 34 73.5
CAN.G78.102 Capsicum annuum HOM05D004297 ORTHO05D005213 5.1e-09 63.5 34 73.5
Eucgr.E00109 Eucalyptus grandis HOM05D004297 ORTHO05D005213 5.1e-09 63.5 34 73.5
TWI59G0377 Tripterygium wilfordii HOM05D004297 ORTHO05D005213 5.1e-09 63.5 34 73.5
VMungo1383G1290 Vigna mungo HOM05D004297 ORTHO05D005213 5.1e-09 63.5 34 73.5
Solyc01g094880.3 Solanum lycopersicum HOM05D004297 ORTHO05D005213 6.7e-09 63.2 34 73.5
Sopen01g038660 Solanum pennellii HOM05D004297 ORTHO05D005213 6.7e-09 63.2 34 73.5
Nitab4.5_0000583g0330 Nicotiana tabacum HOM05D004297 ORTHO05D005213 8.8e-09 62.8 34 73.5
SEGI_29424 Sequoiadendron giganteum HOM05D004297 ORTHO05D000001 8.8e-09 62.8 34 70.6
Gohir.A07G141200 Gossypium hirsutum HOM05D004297 ORTHO05D005213 1.5e-08 62.0 34 73.5
Gohir.D07G146700 Gossypium hirsutum HOM05D004297 ORTHO05D005213 1.5e-08 62.0 34 73.5
Gorai.001G159200 Gossypium raimondii HOM05D004297 ORTHO05D005213 1.5e-08 62.0 34 73.5
arahy.Tifrunner.gnm1.ann1.0F1BT2 Arachis hypogaea HOM05D004297 ORTHO05D005213 2.0e-08 61.6 34 70.6
arahy.Tifrunner.gnm1.ann1.553FBT Arachis hypogaea HOM05D004297 ORTHO05D005213 2.0e-08 61.6 34 70.6
Duzib138G1153 Durio zibethinus HOM05D004297 ORTHO05D005213 2.0e-08 61.6 34 73.5
Glyma.09G256700 Glycine max HOM05D004297 ORTHO05D005213 2.0e-08 61.6 34 70.6
Glyma.18G235800 Glycine max HOM05D004297 ORTHO05D005213 2.0e-08 61.6 34 70.6
Lj1g0026001 Lotus japonicus HOM05D004297 ORTHO05D005213 2.0e-08 61.6 34 70.6
Ca_00827_v3 Cicer arietinum L. HOM05D000005 ORTHO05D005213 3.3e-08 60.8 34 70.6
COL.COLO4_12744 Corchorus olitorius HOM05D004297 ORTHO05D005213 3.3e-08 60.8 34 70.6
Medtr7g078170 Medicago truncatula HOM05D004297 ORTHO05D005213 3.3e-08 60.8 34 70.6
Psat0ss4650g0200 Pisum sativum HOM05D004297 ORTHO05D005213 3.3e-08 60.8 34 70.6
Psat3g107280 Pisum sativum HOM05D004297 ORTHO05D005213 3.3e-08 60.8 34 70.6
TPR.G37786 Trifolium pratense HOM05D004297 ORTHO05D005213 3.3e-08 60.8 34 70.6
Lalb_Chr03g0038271 Lupinus albus HOM05D004297 ORTHO05D005213 4.4e-08 60.5 34 70.6
SHI13402 Sapria himalayana HOM05D004297 ORTHO05D005213 5.7e-08 60.1 34 70.6
QL04p054287 Quercus lobata HOM05D004297 ORTHO05D005213 7.4e-08 59.7 43 60.5
unitig_749.g14347 Utricularia gibba HOM05D004297 ORTHO05D005213 2.2e-07 58.2 42 59.5
Sed0025112 Sechium edule HOM05D004297 ORTHO05D005213 2.8e-07 57.8 34 67.6
C08p36360 Brassica napus HOM05D004297 ORTHO05D005213 1.1e-06 55.8 36 66.7
BolC8t51219H Brassica oleracea HOM05D004297 ORTHO05D005213 1.1e-06 55.8 36 66.7


User provided reference genes

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