Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0356801 Rosa chinensis HOM05D004502 ORTHO05D005579 0.0e+00 1719.1 844 100.0
FvH4_7g14850 Fragaria vesca HOM05D004502 ORTHO05D005579 0.0e+00 1515.7 845 88.2
FAN01G2073 Fragaria x ananassa HOM05D004502 ORTHO05D005579 0.0e+00 1484.2 837 87.3
FAN10G2351 Fragaria x ananassa HOM05D004502 ORTHO05D005579 0.0e+00 1460.3 845 85.6
FAN06G1095 Fragaria x ananassa HOM05D004502 ORTHO05D005579 0.0e+00 1449.5 888 82.0
FAN06G0667 Fragaria x ananassa HOM05D004502 ORTHO05D005579 0.0e+00 1446.0 845 85.2
FAN10G2492 Fragaria x ananassa HOM05D004502 ORTHO05D005579 0.0e+00 1399.4 845 83.0
MD07G1133800 Malus domestica HOM05D004502 ORTHO05D005579 0.0e+00 1301.6 842 76.4
CiPaw.01G063800 Carya illinoinensis HOM05D004502 ORTHO05D005579 0.0e+00 1143.6 840 66.9
Haze_15535 Corylus avellana HOM05D004502 ORTHO05D005579 0.0e+00 1141.7 830 68.2
Prupe.2G173600 Prunus persica HOM05D004502 ORTHO05D005579 0.0e+00 1137.5 720 77.2
Cfa003897 Carpinus fangiana HOM05D004502 ORTHO05D005579 0.0e+00 1119.0 828 67.0
QL04p054124 Quercus lobata HOM05D004502 ORTHO05D005579 0.0e+00 1112.8 840 65.6
CANSAT56G0477 Cannabis sativa HOM05D004502 ORTHO05D005579 0.0e+00 1102.8 787 67.0
Cpa.g.sc11.33 Carica papaya HOM05D004502 ORTHO05D005579 2.0e-310 1068.9 845 62.6
GSVIVG01027000001 Vitis vinifera HOM05D004502 ORTHO05D005579 7.4e-310 1067.0 832 64.1
Ciclev10018851m.g Citrus clementina HOM05D004502 ORTHO05D005579 1.9e-305 1052.4 843 60.7
Dinv32500 Davidia involucrata HOM05D004502 ORTHO05D005579 3.6e-304 1048.1 884 61.4
Potri.014G087300 Populus trichocarpa HOM05D004502 ORTHO05D005579 4.0e-303 1044.6 848 62.1
Hma1.2p1_0071F.1_g037745 Hydrangea macrophylla HOM05D004502 ORTHO05D005579 8.8e-303 1043.5 846 62.8
Atru.chr5.526 Acer truncatum HOM05D004502 ORTHO05D005579 8.3e-301 1036.9 850 60.1
CsaV3_6G000710 Cucumis sativus L. HOM05D004502 ORTHO05D005579 5.4e-300 1034.2 844 61.3
TWI23G1305 Tripterygium wilfordii HOM05D004502 ORTHO05D005579 2.0e-299 1032.3 843 61.3
Gorai.004G159100 Gossypium raimondii HOM05D004502 ORTHO05D005579 3.6e-296 1021.5 845 61.5
Actinidia14191 Actinidia chinensis HOM05D004502 ORTHO05D005579 8.8e-295 1016.9 857 60.3
Glyma.07G068700 Glycine max HOM05D004502 ORTHO05D005579 2.4e-292 1008.8 851 59.6
Gohir.D11G095000 Gossypium hirsutum HOM05D004502 ORTHO05D005579 3.1e-292 1008.4 839 60.1
Sed0014632 Sechium edule HOM05D004502 ORTHO05D005579 4.1e-292 1008.1 807 61.2
TAR629G1389 Trochodendron aralioides HOM05D004502 ORTHO05D005579 9.1e-292 1006.9 855 59.8
Gorai.007G101400 Gossypium raimondii HOM05D004502 ORTHO05D005579 2.0e-291 1005.7 839 59.8
Glyma.09G257000 Glycine max HOM05D004502 ORTHO05D005579 2.7e-291 1005.4 840 59.2
Actinidia20888 Actinidia chinensis HOM05D004502 ORTHO05D005579 1.0e-290 1003.4 839 61.6
Glyma.18G235400 Glycine max HOM05D004502 ORTHO05D005579 4.2e-289 998.0 840 58.7
Lj3g0021790 Lotus japonicus HOM05D004502 ORTHO05D005579 5.5e-289 997.7 833 59.7
Duzib133G0971 Durio zibethinus HOM05D004502 ORTHO05D005579 1.6e-288 996.1 841 61.1
PGR042G2088 Punica granatum HOM05D004502 ORTHO05D005579 3.6e-288 995.0 832 60.3
Sed0001889 Sechium edule HOM05D004502 ORTHO05D005579 3.6e-288 995.0 847 58.8
Nn1g01586 Nelumbo nucifera HOM05D004502 ORTHO05D005579 6.8e-287 990.7 830 59.6
Thecc.01G356300 Theobroma cacao HOM05D004502 ORTHO05D005579 8.9e-287 990.3 784 62.0
Phvul.010G100800 Phaseolus vulgaris HOM05D004502 ORTHO05D005579 3.7e-285 984.9 846 58.3
VMungo0331G1775 Vigna mungo HOM05D004502 ORTHO05D005579 1.1e-284 983.4 846 57.7
Manes.01G254800 Manihot esculenta HOM05D004502 ORTHO05D005579 1.4e-284 983.0 758 64.4
Eucgr.E00113 Eucalyptus grandis HOM05D004502 ORTHO05D005579 3.2e-284 981.9 830 59.8
ClCG06G003550 Citrullus lanatus HOM05D004502 ORTHO05D005579 5.4e-284 981.1 844 58.9
Medtr8g028875 Medicago truncatula HOM05D004502 ORTHO05D005579 7.0e-284 980.7 845 57.3
VMungo1383G3442 Vigna mungo HOM05D004502 ORTHO05D005579 1.6e-283 979.5 844 58.2
Duzib138G1080 Durio zibethinus HOM05D004502 ORTHO05D005579 3.9e-282 974.9 788 62.8
Lalb_Chr17g0339421 Lupinus albus HOM05D004502 ORTHO05D005579 8.6e-282 973.8 845 58.3
Gohir.A11G090500 Gossypium hirsutum HOM05D004502 ORTHO05D005579 1.2e-280 969.9 787 61.1
arahy.Tifrunner.gnm1.ann1.0GN1Z3 Arachis hypogaea HOM05D004502 ORTHO05D005579 1.6e-280 969.5 850 56.4
arahy.Tifrunner.gnm1.ann1.V8X9PU Arachis hypogaea HOM05D004502 ORTHO05D005579 8.0e-280 967.2 853 56.2
Sabra14G0063300 Salix brachista HOM05D004502 ORTHO05D005579 2.3e-279 965.7 822 59.6
CSS0020518 Camellia sinensis var. sinensis HOM05D004502 ORTHO05D005579 9.8e-278 960.3 781 61.3
TPR.G37813 Trifolium pratense HOM05D004502 ORTHO05D005579 1.3e-277 959.9 805 57.5
Rhsim07G0013000 Rhododendron simsii HOM05D004502 ORTHO05D005579 1.1e-276 956.8 856 58.2
Hund16660 Selenicereus undatus HOM05D004502 ORTHO05D005579 5.4e-276 954.5 835 56.6
HanXRQChr17g0562371 Helianthus annuus HOM05D004502 ORTHO05D005579 8.6e-274 947.2 833 58.3
arahy.Tifrunner.gnm1.ann1.C1BLFK Arachis hypogaea HOM05D004502 ORTHO05D005579 4.3e-273 944.9 850 56.9
Psat3g107400 Pisum sativum HOM05D004502 ORTHO05D005579 4.0e-271 938.3 827 56.5
ECA234G4483 Erigeron canadensis HOM05D004502 ORTHO05D005579 5.2e-271 937.9 813 58.2
FAN03G0719 Fragaria x ananassa HOM05D004502 ORTHO05D005579 2.6e-270 935.6 724 67.8
Migut.B01778 Erythranthe guttata HOM05D004502 ORTHO05D005579 5.4e-268 927.9 830 56.0
MD01G1067200 Malus domestica HOM05D004502 ORTHO05D005579 1.6e-267 926.4 612 74.2
TPR.G17909 Trifolium pratense HOM05D004502 ORTHO05D005579 1.1e-265 920.2 855 55.3
Lj9C585G14 Lonicera japonica HOM05D004502 ORTHO05D005579 2.3e-263 912.5 835 57.0
Lsat_1_v5_gn_4_34660 Lactuca sativa HOM05D004502 ORTHO05D005579 6.8e-263 911.0 828 56.5
Nn6g33342 Nelumbo nucifera HOM05D004502 ORTHO05D005579 6.8e-263 911.0 783 58.5
Cc02_g38300 Coffea canephora HOM05D004502 ORTHO05D005579 1.2e-262 910.2 827 55.1
Phvul.008G060500 Phaseolus vulgaris HOM05D004502 ORTHO05D005579 2.2e-261 906.0 760 58.9
Peaxi162Scf00020g01028 Petunia axillaris HOM05D004502 ORTHO05D005579 6.4e-261 904.4 816 57.1
vmacro13259 Vaccinium macrocarpon HOM05D004502 ORTHO05D005579 6.4e-261 904.4 786 57.6
Oeu052960.2 Olea europaea HOM05D004502 ORTHO05D005579 4.1e-260 901.7 842 55.7
COL.COLO4_12736 Corchorus olitorius HOM05D004502 ORTHO05D005579 1.2e-259 900.2 693 63.9
Aa31LG1G27460 Aethionema arabicum HOM05D004502 ORTHO05D005579 1.6e-259 899.8 836 55.6
SalBow3G3684 Salvia bowleyana HOM05D004502 ORTHO05D005579 2.1e-259 899.4 832 55.0
Sc01g0003530 Simmondsia chinensis HOM05D004502 ORTHO05D005579 3.0e-258 895.6 773 56.4
arahy.Tifrunner.gnm1.ann1.04AGHE Arachis hypogaea HOM05D004502 ORTHO05D005579 6.6e-258 894.4 850 55.2
THA.LOC104802040 Tarenaya hassleriana HOM05D004502 ORTHO05D005579 1.6e-256 889.8 837 55.4
Ca_23605_v3 Cicer arietinum L. HOM05D004502 ORTHO05D005579 1.4e-255 886.7 740 60.4
MSTRG.17285 Avicennia marina HOM05D004502 ORTHO05D005579 6.4e-253 877.9 825 53.6
Thhalv10001314m.g Eutrema salsugineum HOM05D004502 ORTHO05D005579 1.4e-252 876.7 840 54.6
AL4G45280 Arabidopsis lyrata HOM05D004502 ORTHO05D005579 3.2e-252 875.5 827 54.5
CARHR141310 Cardamine hirsuta HOM05D004502 ORTHO05D005579 7.1e-252 874.4 826 54.7
AUR62004387 Chenopodium quinoa HOM05D004502 ORTHO05D005579 3.5e-251 872.1 784 54.3
HanXRQChr06g0170231 Helianthus annuus HOM05D004502 ORTHO05D005579 3.0e-250 869.0 851 52.5
Sp4g28120 Schrenkiella parvula HOM05D004502 ORTHO05D005579 5.1e-250 868.2 829 54.9
CAN.G78.100 Capsicum annuum HOM05D004502 ORTHO05D005579 1.9e-249 866.3 816 54.5
Solyc01g094860.4 Solanum lycopersicum HOM05D004502 ORTHO05D005579 2.5e-249 865.9 841 53.3
Gohir.D08G153200 Gossypium hirsutum HOM05D004502 ORTHO05D005579 4.3e-249 865.1 695 62.9
Ca_00829_v3 Cicer arietinum L. HOM05D004502 ORTHO05D005579 7.3e-249 864.4 727 58.5
Sopen01g038640 Solanum pennellii HOM05D004502 ORTHO05D005579 7.3e-249 864.4 840 53.3
Carub.0004s2875 Capsella rubella HOM05D004502 ORTHO05D005579 2.1e-248 862.8 812 55.4
AT2G46060 Arabidopsis thaliana HOM05D004502 ORTHO05D005579 1.4e-247 860.1 814 54.4
Rhsim01G0146800 Rhododendron simsii HOM05D004502 ORTHO05D005579 8.4e-245 850.9 855 53.7
Aqoxy7G00260 Aquilegia oxysepala HOM05D004502 ORTHO05D005579 4.2e-244 848.6 870 51.4
C04p06950 Brassica napus HOM05D004502 ORTHO05D005579 7.9e-243 844.3 815 53.7
BolC4t22316H Brassica oleracea HOM05D004502 ORTHO05D005579 7.9e-243 844.3 815 53.7
A05p06020 Brassica napus HOM05D004502 ORTHO05D005579 3.9e-242 842.0 810 54.0
BraA05t19565Z Brassica rapa HOM05D004502 ORTHO05D005579 4.3e-241 838.6 810 54.0
ECA236G0795 Erigeron canadensis HOM05D004502 ORTHO05D005579 1.3e-240 837.0 795 53.8
BraA04t18886Z Brassica rapa HOM05D004502 ORTHO05D005579 3.1e-239 832.4 821 53.0
SGA_v2.0_scaffold95G28821 Striga asiatica HOM05D004502 ORTHO05D005579 1.5e-238 830.1 812 53.4
A04p34250 Brassica napus HOM05D004502 ORTHO05D005579 3.8e-237 825.5 847 51.9
PGSC0003DMG400000181 Solanum tuberosum HOM05D004502 ORTHO05D005579 1.6e-235 820.1 840 51.5
C04p72070 Brassica napus HOM05D004502 ORTHO05D005579 5.1e-234 815.1 840 51.0
PSO478G3176 Papaver somniferum HOM05D004502 ORTHO05D005579 8.7e-234 814.3 846 49.9
PSO782G3525 Papaver somniferum HOM05D004502 ORTHO05D005579 5.3e-231 805.1 812 50.4
Nitab4.5_0010258g0020 Nicotiana tabacum HOM05D004502 ORTHO05D005579 3.5e-227 792.3 781 53.1
Psat4g212960 Pisum sativum HOM05D004502 ORTHO05D005579 2.8e-224 782.7 681 56.5
vmacro20915 Vaccinium macrocarpon HOM05D004502 ORTHO05D005579 2.1e-219 766.5 658 58.7
HPP92_022633 Vanilla planifolia HOM05D004502 ORTHO05D005579 1.5e-217 760.4 842 48.2
ATR0680G297 Amborella trichopoda HOM05D004502 ORTHO05D005579 1.0e-213 747.7 862 46.8
Os10g0446200 Oryza sativa ssp. japonica HOM05D004502 ORTHO05D005579 1.6e-211 740.3 850 45.8
AUR62022593 Chenopodium quinoa HOM05D004502 ORTHO05D005579 3.1e-207 726.1 665 53.5
QL12p032431 Quercus lobata HOM05D004502 ORTHO05D005579 1.4e-204 717.2 836 46.5
EL10Ac1g00390 Beta vulgaris HOM05D004502 ORTHO05D005579 1.6e-203 713.8 867 46.0
MBI18_g32047_MAGBIO Magnolia biondii HOM05D004502 ORTHO05D005579 6.1e-203 711.8 928 43.9
MELO3C021198.2 Cucumis melo HOM05D004502 ORTHO05D005579 6.3e-200 701.8 533 62.9
Nitab4.5_0000583g0350 Nicotiana tabacum HOM05D004502 ORTHO05D005579 3.0e-194 682.9 853 45.1
TWI60G0172 Tripterygium wilfordii HOM05D004502 ORTHO05D005579 4.7e-187 659.1 843 42.7
COL.COLO4_34496 Corchorus olitorius HOM05D004502 ORTHO05D005579 4.7e-179 632.5 776 44.1
SHI13432 Sapria himalayana HOM05D004502 ORTHO05D005579 8.8e-178 628.2 719 46.7
Aqoxy7G00261 Aquilegia oxysepala HOM05D004502 ORTHO05D005579 1.2e-174 617.8 722 46.8
Zm00001eb222430 Zea mays HOM05D004502 ORTHO05D005579 1.3e-173 614.4 700 46.4
TAR375G0606 Trochodendron aralioides HOM05D004502 ORTHO05D005579 1.0e-149 535.0 452 59.5
DCAR_008618 Daucus carota HOM05D004502 ORTHO05D005579 1.9e-148 530.8 398 65.3
Ah.05g180370 Amaranthus hybridus HOM05D004502 ORTHO05D005579 4.3e-148 529.6 529 50.3
AUR62010714 Chenopodium quinoa HOM05D004502 ORTHO05D005579 4.7e-139 499.6 726 40.2
Glyma.16G034551 Glycine max HOM05D004502 ORTHO05D005579 1.3e-131 474.9 350 66.0
Gohir.A08G131800 Gossypium hirsutum HOM05D004502 ORTHO05D005579 3.6e-131 473.4 355 65.9
Gohir.A08G131900 Gossypium hirsutum HOM05D004502 ORTHO05D005579 6.2e-131 472.6 441 56.7
Glyma.16G034476 Glycine max HOM05D004502 ORTHO05D005579 9.0e-106 389.0 384 52.1
Mapoly0035s0107 Marchantia polymorpha HOM05D004502 ORTHO05D005579 1.6e-102 378.3 812 31.8
Haze_08811 Corylus avellana HOM05D004502 ORTHO05D005579 4.6e-102 376.7 639 35.4
unitig_26.g9298 Utricularia gibba HOM05D004502 ORTHO05D005579 1.4e-95 355.1 330 54.2
Pp3c10_11170 Physcomitrium patens HOM05D004502 ORTHO05D005579 7.2e-95 352.8 895 28.4
CDE06G0820 Ceratophyllum demersum HOM05D004502 ORTHO05D005579 1.1e-92 345.5 349 47.6
Hund14837 Selenicereus undatus HOM05D004502 ORTHO05D005579 1.3e-88 332.0 461 39.5
unitig_26.g9297 Utricularia gibba HOM05D004502 ORTHO05D005579 2.0e-84 318.2 413 43.3
MELO3C021197.2 Cucumis melo HOM05D004502 ORTHO05D005579 3.8e-80 303.9 294 55.8
SEGI_07374 Sequoiadendron giganteum HOM05D004502 ORTHO05D005579 2.0e-73 281.6 510 32.9
Cc08_g14990 Coffea canephora HOM05D004502 ORTHO05D005579 9.4e-71 272.7 287 47.7
MD01G1067000 Malus domestica HOM05D004502 ORTHO05D005579 5.7e-60 236.9 187 66.3
COL.COLO4_28934 Corchorus olitorius HOM05D004502 ORTHO05D005579 8.6e-56 223.0 199 55.8
vmacro20916 Vaccinium macrocarpon HOM05D004502 ORTHO05D005579 1.2e-52 212.6 187 61.0
MELO3C031211.2 Cucumis melo HOM05D004502 ORTHO05D005579 2.2e-35 155.2 143 57.3
CBR_g17145 Chara braunii HOM05D004502 ORTHO05D005579 5.8e-28 130.6 127 44.1
Hund14845 Selenicereus undatus HOM05D004502 ORTHO05D005579 2.8e-22 111.7 111 49.5
TPR.G24958 Trifolium pratense HOM05D004502 ORTHO05D005579 9.0e-21 106.7 113 47.8
CDE06G0272 Ceratophyllum demersum HOM05D004502 ORTHO05D005579 3.5e-17 94.7 88 55.7
Hund14838 Selenicereus undatus HOM05D004502 ORTHO05D005579 6.9e-13 80.5 129 36.4
arahy.Tifrunner.gnm1.ann1.I8C0YZ Arachis hypogaea HOM05D000064 ORTHO05D001480 6.4e-11 73.9 55 61.8
arahy.Tifrunner.gnm1.ann1.YV6W0W Arachis hypogaea HOM05D000064 ORTHO05D001480 4.2e-10 71.2 47 63.8
SEGI_31877 Sequoiadendron giganteum HOM05D004502 ORTHO05D005579 1.2e-09 69.7 88 37.5
MELO3C034807.2 Cucumis melo HOM05D004502 ORTHO05D011879 3.5e-09 68.2 79 46.8
Thecc.03G282200 Theobroma cacao HOM05D004502 ORTHO05D005579 4.6e-09 67.8 120 35.8
arahy.Tifrunner.gnm1.ann1.R57FTB Arachis hypogaea HOM05D004502 ORTHO05D002623 5.1e-08 64.3 45 57.8
Hund14846 Selenicereus undatus HOM05D004502 ORTHO05D005579 2.5e-07 62.0 63 44.4


User provided reference genes

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