Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0356181 Rosa chinensis HOM05D004139 ORTHO05D004873 3.8e-27 124.0 59 100.0
RcHm_v2.0_Chr5g0017371 Rosa chinensis HOM05D004139 ORTHO05D004873 5.5e-26 120.2 59 96.6
FvH4_7g15180 Fragaria vesca HOM05D004139 ORTHO05D004873 1.0e-24 115.9 59 91.5
FAN03G2760 Fragaria x ananassa HOM05D004139 ORTHO05D004873 1.0e-24 115.9 59 91.5
Manes.01G252900 Manihot esculenta HOM05D004139 ORTHO05D004873 6.7e-24 113.2 59 84.7
RcHm_v2.0_Chr1g0357601 Rosa chinensis HOM05D004139 ORTHO05D004873 6.7e-24 113.2 59 89.8
Sabra14G0065100 Salix brachista HOM05D004139 ORTHO05D004873 1.1e-23 112.5 59 88.1
CANSAT56G2748 Cannabis sativa HOM05D004139 ORTHO05D004873 1.5e-23 112.1 59 86.4
MD07G1132400 Malus domestica HOM05D004139 ORTHO05D004873 1.9e-23 111.7 59 84.7
Potri.014G089400 Populus trichocarpa HOM05D004139 ORTHO05D004873 3.3e-23 110.9 59 83.1
GSVIVG01026958001 Vitis vinifera HOM05D004139 ORTHO05D004873 4.3e-23 110.5 59 84.7
Haze_15555 Corylus avellana HOM05D004139 ORTHO05D004873 9.7e-23 109.4 59 84.7
Cpa.g.sc184.28 Carica papaya HOM05D004139 ORTHO05D004873 1.3e-22 109.0 59 84.7
Actinidia10064 Actinidia chinensis HOM05D004139 ORTHO05D004873 1.6e-22 108.6 59 84.7
Cfa003879 Carpinus fangiana HOM05D004139 ORTHO05D004873 2.2e-22 108.2 59 83.1
RcHm_v2.0_Chr1g0357981 Rosa chinensis HOM05D004139 ORTHO05D004873 2.8e-22 107.8 57 89.5
Actinidia20155 Actinidia chinensis HOM05D004139 ORTHO05D004873 3.7e-22 107.5 59 83.1
Dinv43858 Davidia involucrata HOM05D004139 ORTHO05D004873 3.7e-22 107.5 59 84.7
Eucgr.D02321 Eucalyptus grandis HOM05D004139 ORTHO05D004873 3.7e-22 107.5 59 78.0
Rhsim07G0011100 Rhododendron simsii HOM05D004139 ORTHO05D004873 4.8e-22 107.1 59 83.1
PGR031G0269 Punica granatum HOM05D004139 ORTHO05D004873 8.2e-22 106.3 58 79.3
HanXRQChr06g0170301 Helianthus annuus HOM05D004139 ORTHO05D004873 1.1e-21 105.9 59 79.7
Hma1.2p1_0623F.1_g191015 Hydrangea macrophylla HOM05D004139 ORTHO05D004873 1.1e-21 105.9 59 76.3
MD01G1070100 Malus domestica HOM05D004139 ORTHO05D004873 1.1e-21 105.9 59 84.7
Nn1g01661 Nelumbo nucifera HOM05D004139 ORTHO05D004873 1.1e-21 105.9 60 85.0
QL04p055168 Quercus lobata HOM05D004139 ORTHO05D004873 1.1e-21 105.9 58 79.3
CSS0009771 Camellia sinensis var. sinensis HOM05D004139 ORTHO05D004873 1.4e-21 105.5 59 78.0
Dinv32515 Davidia involucrata HOM05D004139 ORTHO05D004873 1.4e-21 105.5 59 81.4
Prupe.2G176300 Prunus persica HOM05D004139 ORTHO05D004873 1.4e-21 105.5 59 84.7
Sc23g0002600 Simmondsia chinensis HOM05D004139 ORTHO05D004873 1.4e-21 105.5 59 81.4
Manes.05G030100 Manihot esculenta HOM05D004139 ORTHO05D004873 1.8e-21 105.1 59 83.1
ATR0661G136 Amborella trichopoda HOM05D004139 ORTHO05D004873 2.4e-21 104.8 60 83.3
CiPaw.02G034000 Carya illinoinensis HOM05D004139 ORTHO05D004873 2.4e-21 104.8 59 78.0
Duzib133G0727 Durio zibethinus HOM05D004139 ORTHO05D004873 2.4e-21 104.8 59 81.4
DCAR_008636 Daucus carota HOM05D004139 ORTHO05D004873 3.1e-21 104.4 58 82.8
Duzib138G1274 Durio zibethinus HOM05D004139 ORTHO05D004873 3.1e-21 104.4 59 79.7
Gohir.D08G153900 Gossypium hirsutum HOM05D004139 ORTHO05D004873 3.1e-21 104.4 59 79.7
Gorai.004G159800 Gossypium raimondii HOM05D004139 ORTHO05D004873 3.1e-21 104.4 59 79.7
TWI59G0388 Tripterygium wilfordii HOM05D004139 ORTHO05D004873 3.1e-21 104.4 59 79.7
AL1G10900 Arabidopsis lyrata HOM05D004139 ORTHO05D004873 4.1e-21 104.0 59 81.4
AT1G01510 Arabidopsis thaliana HOM05D004139 ORTHO05D004873 4.1e-21 104.0 59 81.4
Carub.0001s0073 Capsella rubella HOM05D004139 ORTHO05D004873 4.1e-21 104.0 59 81.4
COL.COLO4_12769 Corchorus olitorius HOM05D004139 ORTHO05D004873 4.1e-21 104.0 59 78.0
FAN01G2783 Fragaria x ananassa HOM05D004139 ORTHO05D004873 4.1e-21 104.0 79 68.4
FAN10G1735 Fragaria x ananassa HOM05D004139 ORTHO05D004873 4.1e-21 104.0 79 68.4
FAN10G1927 Fragaria x ananassa HOM05D004139 ORTHO05D004873 4.1e-21 104.0 79 68.4
Gohir.A08G132500 Gossypium hirsutum HOM05D004139 ORTHO05D004873 4.1e-21 104.0 59 78.0
Gohir.A11G091900 Gossypium hirsutum HOM05D004139 ORTHO05D004873 4.1e-21 104.0 59 78.0
Gohir.D11G096700 Gossypium hirsutum HOM05D004139 ORTHO05D004873 4.1e-21 104.0 59 78.0
Gorai.007G103000 Gossypium raimondii HOM05D004139 ORTHO05D004873 4.1e-21 104.0 59 78.0
Thecc.01G353300 Theobroma cacao HOM05D004139 ORTHO05D004873 4.1e-21 104.0 59 78.0
TAR636G3175 Trochodendron aralioides HOM05D004139 ORTHO05D004873 4.1e-21 104.0 60 83.3
Atru.chr5.554 Acer truncatum HOM05D004139 ORTHO05D004873 5.3e-21 103.6 59 79.7
Ciclev10019285m.g Citrus clementina HOM05D004139 ORTHO05D004873 5.3e-21 103.6 59 78.0
Nn6g32432 Nelumbo nucifera HOM05D004139 ORTHO05D004873 5.3e-21 103.6 60 81.7
Sabra02G0147300 Salix brachista HOM05D004139 ORTHO05D004873 5.3e-21 103.6 59 83.1
ECA236G4877 Erigeron canadensis HOM05D004139 ORTHO05D004873 6.9e-21 103.2 59 74.6
HanXRQChr04g0121381 Helianthus annuus HOM05D004139 ORTHO05D004873 6.9e-21 103.2 59 78.0
TAR629G2568 Trochodendron aralioides HOM05D004139 ORTHO05D004873 9.0e-21 102.8 60 81.7
ClCG05G001290 Citrullus lanatus HOM05D004139 ORTHO05D004873 1.2e-20 102.4 58 82.8
MELO3C006085.2 Cucumis melo HOM05D004139 ORTHO05D004873 1.2e-20 102.4 58 82.8
CsaV3_3G008650 Cucumis sativus L. HOM05D004139 ORTHO05D004873 1.2e-20 102.4 58 82.8
Sp1g00800 Schrenkiella parvula HOM05D004139 ORTHO05D004873 1.5e-20 102.1 59 79.7
CARHR000860 Cardamine hirsuta HOM05D004139 ORTHO05D004873 2.0e-20 101.7 59 79.7
A10p00480 Brassica napus HOM05D004139 ORTHO05D004873 2.6e-20 101.3 59 81.4
Cc02_g38470 Coffea canephora HOM05D004139 ORTHO05D004873 2.6e-20 101.3 59 81.4
Thhalv10007060m.g Eutrema salsugineum HOM05D004139 ORTHO05D004873 2.6e-20 101.3 57 80.7
Oeu018961.1 Olea europaea HOM05D004139 ORTHO05D004873 3.4e-20 100.9 59 79.7
SalBow3G2657 Salvia bowleyana HOM05D004139 ORTHO05D004873 3.4e-20 100.9 59 78.0
BolC5t28840H Brassica oleracea HOM05D004139 ORTHO05D004873 4.5e-20 100.5 59 79.7
BraA10t42327Z Brassica rapa HOM05D004139 ORTHO05D004873 4.5e-20 100.5 59 79.7
Potri.002G163200 Populus trichocarpa HOM05D004139 ORTHO05D004873 4.5e-20 100.5 58 82.8
Lalb_Chr19g0126891 Lupinus albus HOM05D004139 ORTHO05D004873 5.9e-20 100.1 59 81.4
Glyma.09G255200 Glycine max HOM05D004139 ORTHO05D004873 7.7e-20 99.8 59 81.4
Glyma.18G237800 Glycine max HOM05D004139 ORTHO05D004873 7.7e-20 99.8 59 81.4
Lalb_Chr03g0038301 Lupinus albus HOM05D004139 ORTHO05D004873 7.7e-20 99.8 59 81.4
SGA_v2.0_scaffold43G16391 Striga asiatica HOM05D004139 ORTHO05D004873 7.7e-20 99.8 59 79.7
THA.LOC104801394 Tarenaya hassleriana HOM05D004139 ORTHO05D004873 7.7e-20 99.8 59 78.0
HPP92_003463 Vanilla planifolia HOM05D004139 ORTHO05D004873 7.7e-20 99.8 60 80.0
Aa31LG1G10760 Aethionema arabicum HOM05D004139 ORTHO05D004873 1.0e-19 99.4 59 76.3
arahy.Tifrunner.gnm1.ann1.G1BLE5 Arachis hypogaea HOM05D004139 ORTHO05D004873 1.0e-19 99.4 59 79.7
arahy.Tifrunner.gnm1.ann1.Y78NPN Arachis hypogaea HOM05D004139 ORTHO05D004873 1.0e-19 99.4 59 79.7
BcaB03g13589 Brassica carinata HOM05D004139 ORTHO05D004873 1.0e-19 99.4 59 78.0
C05p00510 Brassica napus HOM05D004139 ORTHO05D004873 1.0e-19 99.4 59 78.0
Migut.N01462 Erythranthe guttata HOM05D004139 ORTHO05D004873 1.0e-19 99.4 59 79.7
SalBow5G0787 Salvia bowleyana HOM05D004139 ORTHO05D004873 1.3e-19 99.0 59 78.0
SalBow5G4419 Salvia bowleyana HOM05D004139 ORTHO05D004873 1.3e-19 99.0 59 78.0
VMungo1383G0046 Vigna mungo HOM05D004139 ORTHO05D004873 1.3e-19 99.0 59 79.7
MSTRG.17294 Avicennia marina HOM05D004139 ORTHO05D004873 1.7e-19 98.6 59 78.0
Nitab4.5_0000915g0160 Nicotiana tabacum HOM05D004139 ORTHO05D004873 1.7e-19 98.6 59 74.6
Nitab4.5_0022943g0010 Nicotiana tabacum HOM05D004139 ORTHO05D004873 1.7e-19 98.6 59 74.6
Oeu054345.1 Olea europaea HOM05D004139 ORTHO05D004873 1.7e-19 98.6 59 76.3
Peaxi162Scf00020g01226 Petunia axillaris HOM05D004139 ORTHO05D004873 1.7e-19 98.6 59 74.6
Sed0003876 Sechium edule HOM05D004139 ORTHO05D004873 1.7e-19 98.6 58 79.3
Solyc01g095040.3 Solanum lycopersicum HOM05D004139 ORTHO05D004873 1.7e-19 98.6 59 74.6
Sopen01g038830 Solanum pennellii HOM05D004139 ORTHO05D004873 1.7e-19 98.6 59 74.6
PGSC0003DMG400000190 Solanum tuberosum HOM05D004139 ORTHO05D004873 1.7e-19 98.6 59 74.6
Lj1g0024287 Lotus japonicus HOM05D004139 ORTHO05D004873 3.8e-19 97.4 59 79.7
Phvul.008G058900 Phaseolus vulgaris HOM05D004139 ORTHO05D004873 3.8e-19 97.4 59 78.0
CAN.G78.121 Capsicum annuum HOM05D004139 ORTHO05D004873 5.0e-19 97.1 59 72.9
Os03g0126100 Oryza sativa ssp. japonica HOM05D004139 ORTHO05D004873 5.0e-19 97.1 60 76.7
vmacro13237 Vaccinium macrocarpon HOM05D004139 ORTHO05D004873 1.1e-18 95.9 77 63.6
PSO478G1271 Papaver somniferum HOM05D004139 ORTHO05D004873 1.4e-18 95.5 60 75.0
CDE02G4181 Ceratophyllum demersum HOM05D004139 ORTHO05D004873 1.9e-18 95.1 60 78.3
AUR62022611 Chenopodium quinoa HOM05D004139 ORTHO05D004873 1.9e-18 95.1 59 76.3
PSO782G2833 Papaver somniferum HOM05D004139 ORTHO05D004873 3.2e-18 94.4 60 75.0
SGA_v2.0_scaffold11G05679 Striga asiatica HOM05D004139 ORTHO05D004873 3.2e-18 94.4 58 72.4
Ah.05g180200 Amaranthus hybridus HOM05D004139 ORTHO05D004873 4.2e-18 94.0 59 74.6
CDE11G0755 Ceratophyllum demersum HOM05D004139 ORTHO05D004873 4.2e-18 94.0 60 76.7
unitig_748.g7106 Utricularia gibba HOM05D004139 ORTHO05D004873 7.2e-18 93.2 59 72.9
EL10Ac1g00363 Beta vulgaris HOM05D004139 ORTHO05D004873 9.4e-18 92.8 57 75.4
AUR62004405 Chenopodium quinoa HOM05D004139 ORTHO05D004873 9.4e-18 92.8 59 74.6
Aqoxy7G00189 Aquilegia oxysepala HOM05D004139 ORTHO05D004873 1.6e-17 92.0 60 71.7
MBI04_g15071_MAGBIO Magnolia biondii HOM05D004139 ORTHO05D004873 1.6e-17 92.0 59 78.0
Hund27248 Selenicereus undatus HOM05D004139 ORTHO05D004873 2.7e-17 91.3 57 71.9
FAN06G0792 Fragaria x ananassa HOM05D004139 ORTHO05D004873 3.6e-17 90.9 72 66.7
FAN06G4247 Fragaria x ananassa HOM05D004139 ORTHO05D004873 3.6e-17 90.9 72 66.7
RcHm_v2.0_Chr1g0358141 Rosa chinensis HOM05D004139 ORTHO05D004873 6.1e-17 90.1 47 89.4
MSTRG.4838 Avicennia marina HOM05D004139 ORTHO05D004873 1.0e-16 89.4 58 74.1
MSTRG.28234 Avicennia marina HOM05D004139 ORTHO05D004873 5.1e-16 87.0 57 68.4
Psat3g106200 Pisum sativum HOM05D004139 ORTHO05D004873 6.7e-16 86.7 59 67.8
Ca_07939_v3 Cicer arietinum L. HOM05D004139 ORTHO05D004873 1.1e-15 85.9 59 71.2
TPR.G22297 Trifolium pratense HOM05D004139 ORTHO05D004873 1.1e-15 85.9 59 71.2
Medtr7g078990 Medicago truncatula HOM05D004139 ORTHO05D004873 7.4e-15 83.2 60 70.0
SEGI_14155 Sequoiadendron giganteum HOM05D004139 ORTHO05D004873 1.7e-14 82.0 60 61.7
Zm00001eb001910 Zea mays HOM05D004139 ORTHO05D004873 2.2e-14 81.6 57 68.4
Os10g0533000 Oryza sativa ssp. japonica HOM05D004139 ORTHO05D004873 1.4e-13 79.0 60 66.7
Mapoly0077s0060 Marchantia polymorpha HOM05D004139 ORTHO05D004873 6.9e-13 76.6 60 60.0
SMO259G0050 Selaginella moellendorffii HOM05D004139 ORTHO05D004873 2.0e-12 75.1 57 59.6
Pp3c15_25330 Physcomitrium patens HOM05D004139 ORTHO05D004873 2.6e-12 74.7 60 56.7
Zm00001eb021820 Zea mays HOM05D004139 ORTHO05D004873 2.6e-12 74.7 60 65.0
Pp3c9_22880 Physcomitrium patens HOM05D004139 ORTHO05D004873 1.0e-11 72.8 60 55.0
RcHm_v2.0_Chr1g0357951 Rosa chinensis HOM05D004139 ORTHO05D004873 1.3e-11 72.4 34 91.2
CiPaw.01G065900 Carya illinoinensis HOM05D004139 ORTHO05D004873 3.2e-10 67.8 41 65.9
Lj9A588G64 Lonicera japonica HOM05D004139 ORTHO05D004873 3.2e-10 67.8 34 82.4
Hma1.2p1_0627F.1_g191690 Hydrangea macrophylla HOM05D004139 ORTHO05D004873 5.5e-10 67.0 34 82.4
Lsat_1_v5_gn_7_3821 Lactuca sativa HOM05D004139 ORTHO05D004873 1.2e-09 65.9 32 84.4
Hund16674 Selenicereus undatus HOM05D004139 ORTHO05D004873 2.7e-09 64.7 33 78.8
EL10Ac9g20897 Beta vulgaris HOM05D000877 ORTHO05D012137 6.1e-09 63.5 32 78.1
CBR_g48408 Chara braunii HOM05D004139 ORTHO05D004873 3.0e-08 61.2 57 50.9
SHI13389 Sapria himalayana HOM05D004139 ORTHO05D004873 3.0e-08 61.2 33 75.8
AagrBONN_evm.TU.Sc2ySwM_117.2892 Anthoceros agrestis HOM05D004139 ORTHO05D004873 9.7e-07 56.2 60 45.0


User provided reference genes

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