Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0356041 Rosa chinensis HOM05D003837 ORTHO05D004751 1.2e-152 543.1 270 100.0
RcHm_v2.0_Chr1g0356011 Rosa chinensis HOM05D003837 ORTHO05D004751 3.4e-147 525.0 270 95.9
RcHm_v2.0_Chr1g0356051 Rosa chinensis HOM05D003837 ORTHO05D004751 1.1e-126 456.8 271 85.2
FAN16G2327 Fragaria x ananassa HOM05D003837 ORTHO05D004751 3.2e-121 438.7 271 80.1
FvH4_3g44250 Fragaria vesca HOM05D003837 ORTHO05D004751 1.6e-120 436.4 271 79.7
FAN11G2601 Fragaria x ananassa HOM05D003837 ORTHO05D004751 4.6e-120 434.9 271 79.7
FAN06G3536 Fragaria x ananassa HOM05D003837 ORTHO05D004751 1.0e-119 433.7 276 79.3
FAN06G3952 Fragaria x ananassa HOM05D003837 ORTHO05D004751 1.3e-119 433.3 276 79.3
FAN10G0266 Fragaria x ananassa HOM05D003837 ORTHO05D004751 7.3e-118 427.6 270 80.4
FAN01G2925 Fragaria x ananassa HOM05D003837 ORTHO05D004751 9.6e-118 427.2 276 79.0
FAN10G3579 Fragaria x ananassa HOM05D003837 ORTHO05D004751 2.1e-117 426.0 270 80.0
FvH4_7g14540 Fragaria vesca HOM05D003837 ORTHO05D004751 4.8e-109 398.3 270 73.0
FAN10G2900 Fragaria x ananassa HOM05D003837 ORTHO05D004751 8.1e-109 397.5 270 72.2
MD01G1065200 Malus domestica HOM05D003837 ORTHO05D004751 8.1e-109 397.5 270 71.1
RcHm_v2.0_Chr1g0355961 Rosa chinensis HOM05D003837 ORTHO05D004751 1.8e-108 396.4 271 74.2
FvH4_7g14620 Fragaria vesca HOM05D003837 ORTHO05D004751 3.1e-108 395.6 270 71.9
FAN06G1674 Fragaria x ananassa HOM05D003837 ORTHO05D004751 3.1e-108 395.6 270 71.9
RcHm_v2.0_Chr1g0356141 Rosa chinensis HOM05D003837 ORTHO05D004751 9.0e-108 394.0 270 71.1
FAN03G2321 Fragaria x ananassa HOM05D003837 ORTHO05D004751 4.5e-107 391.7 276 71.0
FAN01G2145 Fragaria x ananassa HOM05D003837 ORTHO05D004751 5.8e-107 391.3 270 71.1
FAN10G2259 Fragaria x ananassa HOM05D003837 ORTHO05D004751 9.9e-107 390.6 276 70.7
FAN06G4414 Fragaria x ananassa HOM05D003837 ORTHO05D004751 2.9e-106 389.0 276 70.3
Sed0000473 Sechium edule HOM05D003837 ORTHO05D004751 3.8e-106 388.7 270 70.0
FAN01G0904 Fragaria x ananassa HOM05D003837 ORTHO05D004751 1.9e-105 386.3 270 70.7
CiPaw.01G063000 Carya illinoinensis HOM05D003837 ORTHO05D004751 3.2e-105 385.6 270 70.7
Manes.01G255600 Manihot esculenta HOM05D003837 ORTHO05D004751 4.2e-105 385.2 266 69.5
Duzib138G0194 Durio zibethinus HOM05D003837 ORTHO05D004751 7.1e-105 384.4 270 69.3
Thecc.01G357600 Theobroma cacao HOM05D003837 ORTHO05D004751 7.1e-105 384.4 270 69.3
MELO3C021202.2 Cucumis melo HOM05D003837 ORTHO05D004751 9.3e-105 384.0 271 70.5
Potri.014G086100 Populus trichocarpa HOM05D003837 ORTHO05D004751 9.3e-105 384.0 270 68.9
QL04p053649 Quercus lobata HOM05D003837 ORTHO05D004751 2.7e-104 382.5 269 68.8
Gorai.004G042000 Gossypium raimondii HOM05D003837 ORTHO05D004751 1.0e-103 380.6 270 68.9
Sabra14G0062400 Salix brachista HOM05D003837 ORTHO05D004751 1.0e-103 380.6 270 69.6
PGSC0003DMG400006508 Solanum tuberosum HOM05D003837 ORTHO05D004751 1.3e-103 380.2 270 69.3
Psat3g107800 Pisum sativum HOM05D003837 ORTHO05D004751 1.8e-103 379.8 270 68.5
CANSAT56G1308 Cannabis sativa HOM05D003837 ORTHO05D004751 6.7e-103 377.9 270 67.8
Gohir.A08G032500 Gossypium hirsutum HOM05D003837 ORTHO05D004751 8.7e-103 377.5 270 68.5
Gohir.D08G043400 Gossypium hirsutum HOM05D003837 ORTHO05D004751 8.7e-103 377.5 270 68.1
Ah.05g180500 Amaranthus hybridus HOM05D003837 ORTHO05D004751 1.1e-102 377.1 272 66.9
arahy.Tifrunner.gnm1.ann1.50MGD9 Arachis hypogaea HOM05D003837 ORTHO05D004751 1.1e-102 377.1 270 66.7
Dinv43830 Davidia involucrata HOM05D003837 ORTHO05D004751 1.9e-102 376.3 270 68.1
Nitab4.5_0002811g0010 Nicotiana tabacum HOM05D003837 ORTHO05D004751 1.9e-102 376.3 270 68.1
Nitab4.5_0000386g0040 Nicotiana tabacum HOM05D003837 ORTHO05D004751 2.5e-102 375.9 270 68.5
Solyc10g012410.3 Solanum lycopersicum HOM05D003837 ORTHO05D004751 3.3e-102 375.6 270 68.5
GSVIVG01026949001 Vitis vinifera HOM05D003837 ORTHO05D004751 3.3e-102 375.6 270 68.1
Sopen10g006240 Solanum pennellii HOM05D003837 ORTHO05D004751 4.3e-102 375.2 270 68.1
Cc02_g38180 Coffea canephora HOM05D003837 ORTHO05D004751 5.6e-102 374.8 270 67.8
AUR62004375 Chenopodium quinoa HOM05D003837 ORTHO05D004751 1.6e-101 373.2 272 66.5
arahy.Tifrunner.gnm1.ann1.8FQY9T Arachis hypogaea HOM05D003837 ORTHO05D004751 2.1e-101 372.9 270 65.9
arahy.Tifrunner.gnm1.ann1.MHF7VE Arachis hypogaea HOM05D003837 ORTHO05D004751 2.1e-101 372.9 270 65.9
Atru.chr5.511 Acer truncatum HOM05D003837 ORTHO05D004751 2.8e-101 372.5 270 66.7
AUR62022582 Chenopodium quinoa HOM05D003837 ORTHO05D004751 2.8e-101 372.5 272 65.8
arahy.Tifrunner.gnm1.ann1.LGM3J9 Arachis hypogaea HOM05D003837 ORTHO05D004751 3.7e-101 372.1 270 65.6
Glyma.18G234200 Glycine max HOM05D003837 ORTHO05D004751 4.8e-101 371.7 270 66.7
Medtr7g077870 Medicago truncatula HOM05D003837 ORTHO05D004751 6.2e-101 371.3 270 66.7
PGR042G3540 Punica granatum HOM05D003837 ORTHO05D004751 6.2e-101 371.3 271 67.2
Eucgr.E01551 Eucalyptus grandis HOM05D003837 ORTHO05D004751 8.1e-101 370.9 270 66.7
Hma1.2p1_0780F.1_g216730 Hydrangea macrophylla HOM05D003837 ORTHO05D004751 8.1e-101 370.9 268 67.2
Phvul.008G061600 Phaseolus vulgaris HOM05D003837 ORTHO05D004751 1.4e-100 370.2 270 66.3
Rhsim01G0163300 Rhododendron simsii HOM05D003837 ORTHO05D004751 1.8e-100 369.8 270 67.4
CAN.G116.14 Capsicum annuum HOM05D003837 ORTHO05D004751 3.1e-100 369.0 270 67.4
ECA236G1077 Erigeron canadensis HOM05D003837 ORTHO05D004751 3.1e-100 369.0 270 65.6
AL4G45220 Arabidopsis lyrata HOM05D003837 ORTHO05D004751 5.3e-100 368.2 270 66.3
Lj9A584G62 Lonicera japonica HOM05D003837 ORTHO05D004751 5.3e-100 368.2 269 67.3
Prupe.2G172200 Prunus persica HOM05D003837 ORTHO05D004751 5.3e-100 368.2 270 68.9
vmacro21886 Vaccinium macrocarpon HOM05D003837 ORTHO05D004751 5.3e-100 368.2 270 66.3
vmacro23130 Vaccinium macrocarpon HOM05D003837 ORTHO05D004751 5.3e-100 368.2 270 66.3
Migut.B01769 Erythranthe guttata HOM05D003837 ORTHO05D004751 6.9e-100 367.9 270 67.0
Rhsim01G0190400 Rhododendron simsii HOM05D003837 ORTHO05D004751 6.9e-100 367.9 270 67.0
MSTRG.17276 Avicennia marina HOM05D003837 ORTHO05D004751 1.2e-99 367.1 270 65.6
Thhalv10001586m.g Eutrema salsugineum HOM05D003837 ORTHO05D004751 1.2e-99 367.1 270 65.6
TAR629G3438 Trochodendron aralioides HOM05D003837 ORTHO05D004751 1.2e-99 367.1 270 65.6
Sp4g28060 Schrenkiella parvula HOM05D003837 ORTHO05D004751 1.5e-99 366.7 270 66.7
Oeu010619.1 Olea europaea HOM05D003837 ORTHO05D004751 4.5e-99 365.2 270 65.9
Ciclev10021689m.g Citrus clementina HOM05D003837 ORTHO05D004751 7.6e-99 364.4 270 65.6
Lsat_1_v5_gn_7_4380 Lactuca sativa HOM05D003837 ORTHO05D004751 7.6e-99 364.4 267 65.5
EL10Ac1g00400 Beta vulgaris HOM05D003837 ORTHO05D004751 1.0e-98 364.0 275 65.1
FAN06G3658 Fragaria x ananassa HOM05D003837 ORTHO05D004751 1.0e-98 364.0 270 68.1
arahy.Tifrunner.gnm1.ann1.AX1MHW Arachis hypogaea HOM05D003837 ORTHO05D004751 1.7e-98 363.2 270 64.8
Carub.0004s2869 Capsella rubella HOM05D003837 ORTHO05D004751 1.7e-98 363.2 270 65.6
RcHm_v2.0_Chr1g0356101 Rosa chinensis HOM05D003837 ORTHO05D004751 1.7e-98 363.2 270 68.1
BraA05t19561Z Brassica rapa HOM05D003837 ORTHO05D004751 2.2e-98 362.8 271 66.1
MBI18_g02839_MAGBIO Magnolia biondii HOM05D003837 ORTHO05D004751 2.2e-98 362.8 270 63.3
AT2G45990 Arabidopsis thaliana HOM05D003837 ORTHO05D004751 2.9e-98 362.5 270 65.9
Haze_15524 Corylus avellana HOM05D003837 ORTHO05D004751 2.9e-98 362.5 307 61.2
Aa31LG1G27400 Aethionema arabicum HOM05D003837 ORTHO05D004751 8.4e-98 360.9 270 65.2
CARHR141260 Cardamine hirsuta HOM05D003837 ORTHO05D004751 1.1e-97 360.5 270 65.2
Ca_07930_v3 Cicer arietinum L. HOM05D003837 ORTHO05D004751 1.1e-97 360.5 282 63.1
BcaC02g12159 Brassica carinata HOM05D003837 ORTHO05D004751 1.4e-97 360.1 271 65.3
A05p05980 Brassica napus HOM05D003837 ORTHO05D004751 3.2e-97 359.0 271 65.7
SalBow3G2595 Salvia bowleyana HOM05D003837 ORTHO05D004751 3.2e-97 359.0 271 64.6
ClCG06G003610 Citrullus lanatus HOM05D003837 ORTHO05D004751 9.3e-97 357.5 270 66.7
unitig_61.g26385 Utricularia gibba HOM05D003837 ORTHO05D004751 9.3e-97 357.5 269 65.4
C04p06910 Brassica napus HOM05D003837 ORTHO05D004751 1.6e-96 356.7 271 65.3
Migut.B01768 Erythranthe guttata HOM05D003837 ORTHO05D004751 1.6e-96 356.7 272 65.1
FAN06G0309 Fragaria x ananassa HOM05D003837 ORTHO05D004751 2.1e-96 356.3 270 67.0
PSO017G1131 Papaver somniferum HOM05D003837 ORTHO05D004751 3.5e-96 355.5 270 63.3
TPR.G37852 Trifolium pratense HOM05D003837 ORTHO05D004751 5.1e-95 351.7 270 62.6
BolC4t22312H Brassica oleracea HOM05D003837 ORTHO05D004751 6.7e-95 351.3 286 61.9
DCAR_025196 Daucus carota HOM05D003837 ORTHO05D004751 8.7e-95 350.9 270 64.4
Lalb_Chr10g0095951 Lupinus albus HOM05D003837 ORTHO05D004751 8.7e-95 350.9 268 64.2
CANSAT56G2444 Cannabis sativa HOM05D003837 ORTHO05D004751 1.1e-94 350.5 270 63.7
CsaV3_6G000640 Cucumis sativus L. HOM05D003837 ORTHO05D004751 1.5e-94 350.1 270 65.6
Lj1g0003798 Lotus japonicus HOM05D003837 ORTHO05D004751 1.5e-94 350.1 270 62.2
Glyma.18G234300 Glycine max HOM05D003837 ORTHO05D004751 2.5e-94 349.4 270 61.5
PSO063G2236 Papaver somniferum HOM05D003837 ORTHO05D004751 7.4e-94 347.8 262 64.1
arahy.Tifrunner.gnm1.ann1.1HB2SZ Arachis hypogaea HOM05D003837 ORTHO05D004751 1.6e-93 346.7 270 61.5
Ca_07931_v3 Cicer arietinum L. HOM05D003837 ORTHO05D004751 2.1e-93 346.3 270 62.2
Lalb_Chr04g0253801 Lupinus albus HOM05D003837 ORTHO05D004751 2.8e-93 345.9 268 61.9
Psat3g107760 Pisum sativum HOM05D003837 ORTHO05D004751 2.8e-93 345.9 270 62.2
arahy.Tifrunner.gnm1.ann1.SJDP6S Arachis hypogaea HOM05D003837 ORTHO05D004751 8.2e-93 344.4 270 61.1
TPR.G37767 Trifolium pratense HOM05D003837 ORTHO05D004751 1.1e-92 344.0 270 63.3
TWI14G0320 Tripterygium wilfordii HOM05D003837 ORTHO05D004751 1.4e-92 343.6 270 64.4
Ciclev10021690m.g Citrus clementina HOM05D003837 ORTHO05D004751 1.8e-92 343.2 270 63.7
Medtr7g077880 Medicago truncatula HOM05D003837 ORTHO05D004751 1.8e-92 343.2 270 61.5
VMungo1383G2611 Vigna mungo HOM05D003837 ORTHO05D004751 1.8e-92 343.2 269 61.3
Cpa.g.sc11.20 Carica papaya HOM05D003837 ORTHO05D004751 1.5e-91 340.1 270 62.2
HPP92_025965 Vanilla planifolia HOM05D003837 ORTHO05D004751 7.6e-91 337.8 270 59.3
CDE05G2325 Ceratophyllum demersum HOM05D003837 ORTHO05D004751 2.9e-90 335.9 267 60.3
Actinidia02836 Actinidia chinensis HOM05D003837 ORTHO05D004751 1.9e-89 333.2 276 61.2
arahy.Tifrunner.gnm1.ann1.I86G4G Arachis hypogaea HOM05D003837 ORTHO05D004751 4.2e-89 332.0 245 65.3
Cfa003906 Carpinus fangiana HOM05D003837 ORTHO05D004751 5.5e-89 331.6 253 65.2
THA.LOC104802037 Tarenaya hassleriana HOM05D003837 ORTHO05D004751 5.5e-89 331.6 270 61.5
VMungo1383G0868 Vigna mungo HOM05D003837 ORTHO05D004751 5.5e-89 331.6 270 61.9
Zm00001eb094870 Zea mays HOM05D003837 ORTHO05D004751 7.1e-89 331.3 269 58.0
COL.COLO4_12726 Corchorus olitorius HOM05D003837 ORTHO05D004751 2.7e-88 329.3 270 61.9
SEGI_21942 Sequoiadendron giganteum HOM05D003837 ORTHO05D004751 4.6e-88 328.6 270 59.6
HanXRQChr04g0121171 Helianthus annuus HOM05D003837 ORTHO05D004751 3.0e-87 325.9 270 58.9
Phvul.008G061500 Phaseolus vulgaris HOM05D003837 ORTHO05D004751 3.0e-87 325.9 268 59.0
Os07g0418000 Oryza sativa ssp. japonica HOM05D003837 ORTHO05D004751 3.9e-87 325.5 269 57.2
HanXRQChr04g0121181 Helianthus annuus HOM05D003837 ORTHO05D004751 6.7e-87 324.7 270 59.3
Hund27264 Selenicereus undatus HOM05D003837 ORTHO05D004751 1.1e-86 323.9 270 58.9
AagrBONN_evm.TU.Sc2ySwM_228.5133 Anthoceros agrestis HOM05D003837 ORTHO05D004751 2.5e-86 322.8 270 59.3
AagrBONN_evm.TU.Sc2ySwM_228.2910 Anthoceros agrestis HOM05D003837 ORTHO05D004751 9.7e-86 320.9 271 57.9
ATR0680G377 Amborella trichopoda HOM05D003837 ORTHO05D004751 7.7e-83 311.2 236 64.0
Mapoly0002s0196 Marchantia polymorpha HOM05D003837 ORTHO05D004751 1.3e-82 310.5 271 57.2
SMO118G0280 Selaginella moellendorffii HOM05D003837 ORTHO05D004751 1.7e-82 310.1 268 56.3
Nn1g01565 Nelumbo nucifera HOM05D003837 ORTHO05D004751 2.9e-82 309.3 270 56.3
arahy.Tifrunner.gnm1.ann1.438NR4 Arachis hypogaea HOM05D003837 ORTHO05D004751 3.8e-82 308.9 267 58.4
Peaxi162Scf00008g02421 Petunia axillaris HOM05D003837 ORTHO05D004751 3.8e-82 308.9 270 59.3
Ca_07932_v3 Cicer arietinum L. HOM05D003837 ORTHO05D004751 3.2e-81 305.8 270 55.2
Pp3c11_2170 Physcomitrium patens HOM05D003837 ORTHO05D004751 9.4e-81 304.3 271 53.9
Pp3c23_10590 Physcomitrium patens HOM05D003837 ORTHO05D004751 4.6e-80 302.0 272 54.4
Lj1g0022323 Lotus japonicus HOM05D003837 ORTHO05D004751 1.1e-78 297.4 236 64.0
Atru.chr5.512 Acer truncatum HOM05D003837 ORTHO05D004751 4.5e-75 285.4 213 66.2
Glyma.09G258500 Glycine max HOM05D003837 ORTHO05D004751 3.9e-71 272.3 215 65.1
FAN10G2608 Fragaria x ananassa HOM05D003837 ORTHO05D004751 6.7e-71 271.6 188 69.7
Pp3c24_7060 Physcomitrium patens HOM05D003837 ORTHO05D004751 5.7e-70 268.5 250 52.0
AUR62004376 Chenopodium quinoa HOM05D003837 ORTHO05D004751 8.2e-69 264.6 212 62.7
CBR_g30756 Chara braunii HOM05D003837 ORTHO05D004751 1.3e-66 257.3 296 46.3
Actinidia02835 Actinidia chinensis HOM05D003837 ORTHO05D004751 6.5e-66 255.0 194 64.9
Sc26g0000870 Simmondsia chinensis HOM05D003837 ORTHO05D004751 1.1e-65 254.2 186 66.7
SMO118G0457 Selaginella moellendorffii HOM05D003837 ORTHO05D004751 4.2e-57 225.7 270 44.1
FAN10G2382 Fragaria x ananassa HOM05D003837 ORTHO05D004751 3.2e-49 199.5 133 71.4
FvH4_7g14570 Fragaria vesca HOM05D003837 ORTHO05D004751 1.6e-48 197.2 141 70.2
CSS0003015 Camellia sinensis var. sinensis HOM05D003837 ORTHO05D004751 1.3e-45 187.6 141 64.5
Cre06.g278117 Chlamydomonas reinhardtii HOM05D003837 ORTHO05D004751 6.6e-42 175.3 266 36.8
RcHm_v2.0_Chr1g0356441 Rosa chinensis HOM05D003837 ORTHO05D004751 1.5e-41 174.1 193 50.8
MCO05G263 Micromonas commoda HOM05D003837 ORTHO05D004751 4.2e-41 172.6 267 36.3
Glyma.09G258400 Glycine max HOM05D003837 ORTHO05D004751 1.0e-39 167.9 133 58.6
vmacro20932 Vaccinium macrocarpon HOM05D003837 ORTHO05D004751 9.8e-38 161.4 182 49.5
SGA_v2.0_scaffold95G28830 Striga asiatica HOM05D003837 ORTHO05D004751 1.6e-35 154.1 270 37.0
Cre13.g578900 Chlamydomonas reinhardtii HOM05D003837 ORTHO05D004751 8.0e-32 141.7 281 34.2
FvH4_7g14571 Fragaria vesca HOM05D003837 ORTHO05D004751 4.4e-30 136.0 88 75.0
MD09G1245400 Malus domestica HOM05D003837 ORTHO05D004751 6.4e-29 132.1 82 78.0
arahy.Tifrunner.gnm1.ann1.B43A3C Arachis hypogaea HOM05D003837 ORTHO05D004751 2.1e-24 117.1 130 50.0
RcHm_v2.0_Chr1g0356021 Rosa chinensis HOM05D003837 ORTHO05D004751 3.1e-23 113.2 109 56.0
arahy.Tifrunner.gnm1.ann1.DBMD67 Arachis hypogaea HOM05D003837 ORTHO05D004751 8.9e-23 111.7 67 76.1
Glyma.04G165300 Glycine max HOM05D003837 ORTHO05D004751 8.9e-23 111.7 110 50.9
MD09G1245300 Malus domestica HOM05D003837 ORTHO05D004751 4.1e-20 102.8 78 65.4
Actinidia37295 Actinidia chinensis HOM05D003837 ORTHO05D004751 5.1e-18 95.9 64 67.2
Ciclev10006592m.g Citrus clementina HOM05D003837 ORTHO05D033091 1.5e-14 84.3 66 54.5
Ciclev10013186m.g Citrus clementina HOM05D003837 ORTHO05D004751 2.1e-11 73.9 68 51.5
A06p08350 Brassica napus HOM05D003837 ORTHO05D099682 3.3e-09 66.6 70 45.7
A05p05950 Brassica napus HOM05D003837 ORTHO05D033091 1.1e-07 61.6 43 60.5
BraA05t19558Z Brassica rapa HOM05D003837 ORTHO05D033091 1.1e-07 61.6 43 60.5
BolC9t54120H Brassica oleracea HOM05D003837 ORTHO05D033622 7.6e-06 55.5 55 49.1
AUR62043290 Chenopodium quinoa HOM05D008055 ORTHO05D009927 7.6e-06 55.5 60 41.7


User provided reference genes

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