Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0355181 Rosa chinensis HOM05D003190 ORTHO05D003745 6.8e-30 133.3 64 100.0
RcHm_v2.0_Chr7g0204651 Rosa chinensis HOM05D003190 ORTHO05D003745 1.2e-15 85.9 42 92.9
FvH4_5g19860 Fragaria vesca HOM05D003190 ORTHO05D003745 6.2e-15 83.6 42 88.1
FAN04G2686 Fragaria x ananassa HOM05D003190 ORTHO05D003745 6.2e-15 83.6 42 88.1
FAN08G1565 Fragaria x ananassa HOM05D003190 ORTHO05D003745 6.2e-15 83.6 42 88.1
FAN13G1610 Fragaria x ananassa HOM05D003190 ORTHO05D003745 6.2e-15 83.6 42 88.1
Actinidia12646 Actinidia chinensis HOM05D003190 ORTHO05D003745 5.8e-13 77.0 42 76.2
Prupe.5G061700 Prunus persica HOM05D003190 ORTHO05D003745 5.8e-13 77.0 39 84.6
MD00G1221600 Malus domestica HOM05D003190 ORTHO05D003745 9.8e-13 76.3 39 82.1
MD02G1237200 Malus domestica HOM05D003190 ORTHO05D003745 9.8e-13 76.3 39 82.1
MD04G1057800 Malus domestica HOM05D003190 ORTHO05D003745 9.8e-13 76.3 39 82.1
Nitab4.5_0012667g0010 Nicotiana tabacum HOM05D003190 ORTHO05D003745 8.3e-12 73.2 42 71.4
Solyc01g090290.4 Solanum lycopersicum HOM05D003190 ORTHO05D003745 8.3e-12 73.2 42 71.4
Sopen01g036080 Solanum pennellii HOM05D003190 ORTHO05D003745 8.3e-12 73.2 42 71.4
PGSC0003DMG400026050 Solanum tuberosum HOM05D003190 ORTHO05D003745 8.3e-12 73.2 42 71.4
Rhsim07G0035600 Rhododendron simsii HOM05D003190 ORTHO05D003745 1.9e-11 72.0 39 76.9
CAN.G1473.15 Capsicum annuum HOM05D003190 ORTHO05D003745 2.4e-11 71.6 42 69.0
Cc02_g25080 Coffea canephora HOM05D003190 ORTHO05D003745 4.1e-11 70.9 42 69.0
Eucgr.D01237 Eucalyptus grandis HOM05D003190 ORTHO05D003745 4.1e-11 70.9 42 69.0
Eucgr.L01589 Eucalyptus grandis HOM05D003190 ORTHO05D003745 4.1e-11 70.9 42 69.0
Medtr7g081735 Medicago truncatula HOM05D003190 ORTHO05D003745 5.4e-11 70.5 39 74.4
vmacro21057 Vaccinium macrocarpon HOM05D003190 ORTHO05D003745 5.4e-11 70.5 42 69.0
Ah.05g177860 Amaranthus hybridus HOM05D003190 ORTHO05D003745 7.0e-11 70.1 39 74.4
PGR042G3195 Punica granatum HOM05D003190 ORTHO05D003745 7.0e-11 70.1 39 74.4
TAR375G0928 Trochodendron aralioides HOM05D003190 ORTHO05D003745 7.0e-11 70.1 42 69.0
Lsat_1_v5_gn_4_39820 Lactuca sativa HOM05D003190 ORTHO05D003745 9.2e-11 69.7 39 74.4
Peaxi162Scf00475g00516 Petunia axillaris HOM05D003190 ORTHO05D003745 9.2e-11 69.7 42 69.0
Sabra14G0034200 Salix brachista HOM05D003190 ORTHO05D003745 9.2e-11 69.7 42 66.7
Sp6g00030 Schrenkiella parvula HOM05D003190 ORTHO05D003745 9.2e-11 69.7 42 71.4
TPR.G14100 Trifolium pratense HOM05D003190 ORTHO05D003745 1.2e-10 69.3 39 71.8
Actinidia12147 Actinidia chinensis HOM05D003190 ORTHO05D003745 1.6e-10 68.9 42 66.7
Actinidia26682 Actinidia chinensis HOM05D003190 ORTHO05D003745 1.6e-10 68.9 42 66.7
CSS0020681 Camellia sinensis var. sinensis HOM05D003190 ORTHO05D003745 1.6e-10 68.9 42 66.7
ECA234G0556 Erigeron canadensis HOM05D003190 ORTHO05D003745 1.6e-10 68.9 39 71.8
Nn6g33831 Nelumbo nucifera HOM05D003190 ORTHO05D003745 1.6e-10 68.9 42 66.7
Aa31LG5G50 Aethionema arabicum HOM05D003190 ORTHO05D003745 2.0e-10 68.6 39 71.8
Ca_08071_v3 Cicer arietinum L. HOM05D003190 ORTHO05D003745 2.0e-10 68.6 39 71.8
MELO3C022274.2 Cucumis melo HOM05D003190 ORTHO05D003745 2.0e-10 68.6 42 66.7
CsaV3_6G008580 Cucumis sativus L. HOM05D003190 ORTHO05D003745 2.0e-10 68.6 42 66.7
Dinv44067 Davidia involucrata HOM05D003190 ORTHO05D003745 2.0e-10 68.6 42 66.7
Manes.01G272900 Manihot esculenta HOM05D003190 ORTHO05D003745 2.0e-10 68.6 42 64.3
Manes.05G054500 Manihot esculenta HOM05D003190 ORTHO05D003745 2.0e-10 68.6 42 64.3
Potri.002G137400 Populus trichocarpa HOM05D003190 ORTHO05D003745 2.0e-10 68.6 42 64.3
TWI14G0166 Tripterygium wilfordii HOM05D003190 ORTHO05D003745 2.0e-10 68.6 42 64.3
TWI59G1064 Tripterygium wilfordii HOM05D003190 ORTHO05D003745 2.0e-10 68.6 42 61.9
Actinidia02786 Actinidia chinensis HOM05D003190 ORTHO05D003745 2.7e-10 68.2 39 71.8
Nn1g00857 Nelumbo nucifera HOM05D003190 ORTHO05D003745 2.7e-10 68.2 42 64.3
Atru.chr5.131 Acer truncatum HOM05D003190 ORTHO05D003745 3.5e-10 67.8 39 71.8
BcaB03g14242 Brassica carinata HOM05D003190 ORTHO05D003745 3.5e-10 67.8 39 71.8
BcaC06g34922 Brassica carinata HOM05D003190 ORTHO05D003745 3.5e-10 67.8 39 71.8
A07p14830 Brassica napus HOM05D003190 ORTHO05D003745 3.5e-10 67.8 39 71.8
C07p21780 Brassica napus HOM05D003190 ORTHO05D003745 3.5e-10 67.8 39 71.8
BolC7t42709H Brassica oleracea HOM05D003190 ORTHO05D003745 3.5e-10 67.8 39 71.8
BraA07t29224Z Brassica rapa HOM05D003190 ORTHO05D003745 3.5e-10 67.8 39 71.8
Oeu020085.3 Olea europaea HOM05D003190 ORTHO05D003745 3.5e-10 67.8 39 69.2
Potri.014G047200 Populus trichocarpa HOM05D003190 ORTHO05D003745 3.5e-10 67.8 39 69.2
Hund27406 Selenicereus undatus HOM05D003190 ORTHO05D003745 3.5e-10 67.8 42 64.3
CSS0044756 Camellia sinensis var. sinensis HOM05D003190 ORTHO05D003745 4.6e-10 67.4 42 64.3
CiPaw.14G020800 Carya illinoinensis HOM05D003190 ORTHO05D003745 4.6e-10 67.4 42 64.3
Ciclev10021825m.g Citrus clementina HOM05D003190 ORTHO05D003745 4.6e-10 67.4 42 64.3
Dinv43620 Davidia involucrata HOM05D003190 ORTHO05D003745 4.6e-10 67.4 39 71.8
QL02p060801 Quercus lobata HOM05D003190 ORTHO05D003745 4.6e-10 67.4 42 64.3
QL04p030379 Quercus lobata HOM05D003190 ORTHO05D003745 4.6e-10 67.4 42 64.3
SalBow5G0141 Salvia bowleyana HOM05D003190 ORTHO05D003745 4.6e-10 67.4 39 71.8
THA.LOC104801488 Tarenaya hassleriana HOM05D003190 ORTHO05D003745 4.6e-10 67.4 40 70.0
CANSAT21G0456 Cannabis sativa HOM05D003190 ORTHO05D003745 7.8e-10 66.6 42 64.3
CANSAT21G1264 Cannabis sativa HOM05D003190 ORTHO05D003745 7.8e-10 66.6 42 64.3
Cpa.g.sc101.14 Carica papaya HOM05D003190 ORTHO05D003745 7.8e-10 66.6 39 69.2
Cfa011075 Carpinus fangiana HOM05D003190 ORTHO05D003745 7.8e-10 66.6 42 64.3
CiPaw.13G026700 Carya illinoinensis HOM05D003190 ORTHO05D003745 7.8e-10 66.6 42 64.3
ClCG06G002540 Citrullus lanatus HOM05D003190 ORTHO05D003745 7.8e-10 66.6 42 64.3
Haze_02841 Corylus avellana HOM05D003190 ORTHO05D003745 7.8e-10 66.6 42 64.3
Migut.N01739 Erythranthe guttata HOM05D003190 ORTHO05D003745 7.8e-10 66.6 42 64.3
Gohir.A12G096900 Gossypium hirsutum HOM05D003190 ORTHO05D003745 7.8e-10 66.6 39 69.2
Gohir.D12G099800 Gossypium hirsutum HOM05D003190 ORTHO05D003745 7.8e-10 66.6 39 69.2
Gorai.008G108700 Gossypium raimondii HOM05D003190 ORTHO05D003745 7.8e-10 66.6 39 69.2
Lj1g0027839 Lotus japonicus HOM05D003190 ORTHO05D003745 7.8e-10 66.6 39 69.2
Psat3g098680 Pisum sativum HOM05D003190 ORTHO05D003745 7.8e-10 66.6 39 69.2
Sc02g0003110 Simmondsia chinensis HOM05D003190 ORTHO05D003745 7.8e-10 66.6 42 64.3
THA.LOC104814067 Tarenaya hassleriana HOM05D003190 ORTHO05D003745 7.8e-10 66.6 39 71.8
Thecc.01G394400 Theobroma cacao HOM05D003190 ORTHO05D003745 7.8e-10 66.6 39 69.2
AL1G10140 Arabidopsis lyrata HOM05D003190 ORTHO05D003745 1.0e-09 66.2 39 69.2
Glyma.15G224900 Glycine max HOM05D003190 ORTHO05D003745 1.0e-09 66.2 42 64.3
Gohir.A11G075600 Gossypium hirsutum HOM05D003190 ORTHO05D003745 1.0e-09 66.2 39 66.7
Gohir.D08G040200 Gossypium hirsutum HOM05D003190 ORTHO05D003745 1.0e-09 66.2 42 61.9
Gohir.D11G080200 Gossypium hirsutum HOM05D003190 ORTHO05D003745 1.0e-09 66.2 39 66.7
Gorai.004G039100 Gossypium raimondii HOM05D003190 ORTHO05D003745 1.0e-09 66.2 42 61.9
Gorai.007G085900 Gossypium raimondii HOM05D003190 ORTHO05D003745 1.0e-09 66.2 39 66.7
Lj7C545T16 Lonicera japonica HOM05D003190 ORTHO05D003745 1.0e-09 66.2 39 69.2
AT1G02090 Arabidopsis thaliana HOM05D003190 ORTHO05D003745 1.3e-09 65.9 39 69.2
arahy.Tifrunner.gnm1.ann1.9AB492 Arachis hypogaea HOM05D003190 ORTHO05D003745 1.3e-09 65.9 39 69.2
arahy.Tifrunner.gnm1.ann1.WK7TVH Arachis hypogaea HOM05D003190 ORTHO05D003745 1.3e-09 65.9 39 69.2
MSTRG.20693 Avicennia marina HOM05D003190 ORTHO05D003745 1.3e-09 65.9 39 66.7
EL10Ac1g00758 Beta vulgaris HOM05D003190 ORTHO05D003745 1.3e-09 65.9 39 69.2
BcaC07g42340 Brassica carinata HOM05D003190 ORTHO05D003745 1.3e-09 65.9 39 69.2
BcaC07g42436 Brassica carinata HOM05D003190 ORTHO05D003745 1.3e-09 65.9 39 69.2
A09p69340 Brassica napus HOM05D003190 ORTHO05D003745 1.3e-09 65.9 39 69.2
BolC8t52924H Brassica oleracea HOM05D003190 ORTHO05D003745 1.3e-09 65.9 39 69.2
BraA09t42279Z Brassica rapa HOM05D003190 ORTHO05D003745 1.3e-09 65.9 39 69.2
Duzib133G1461 Durio zibethinus HOM05D003190 ORTHO05D003745 1.3e-09 65.9 42 61.9
Duzib138G0899 Durio zibethinus HOM05D003190 ORTHO05D003745 1.3e-09 65.9 39 69.2
Glyma.13G187200 Glycine max HOM05D003190 ORTHO05D003745 1.3e-09 65.9 39 69.2
Sp1g00180 Schrenkiella parvula HOM05D003190 ORTHO05D003745 1.3e-09 65.9 39 69.2
TAR374G0382 Trochodendron aralioides HOM05D003190 ORTHO05D003745 1.3e-09 65.9 42 61.9
VMungo1127G1897 Vigna mungo HOM05D003190 ORTHO05D003745 1.3e-09 65.9 39 69.2
MSTRG.17130 Avicennia marina HOM05D003190 ORTHO05D003745 1.7e-09 65.5 39 66.7
CDE12G0792 Ceratophyllum demersum HOM05D003190 ORTHO05D003745 1.7e-09 65.5 39 69.2
PSO063G4643 Papaver somniferum HOM05D003190 ORTHO05D003745 1.7e-09 65.5 39 69.2
CARHR000240 Cardamine hirsuta HOM05D003190 ORTHO05D003745 2.3e-09 65.1 39 69.2
CARHR248010 Cardamine hirsuta HOM05D003190 ORTHO05D003745 2.3e-09 65.1 39 69.2
ECA236G0031 Erigeron canadensis HOM05D003190 ORTHO05D003745 2.3e-09 65.1 42 64.3
Hma1.2p1_0674F.1_g201530 Hydrangea macrophylla HOM05D003190 ORTHO05D003745 2.3e-09 65.1 39 69.2
Lalb_Chr03g0040361 Lupinus albus HOM05D003190 ORTHO05D003745 2.3e-09 65.1 39 69.2
Lalb_Chr19g0126531 Lupinus albus HOM05D003190 ORTHO05D003745 2.3e-09 65.1 39 69.2
PSO478G2298 Papaver somniferum HOM05D003190 ORTHO05D003745 2.3e-09 65.1 43 62.8
Phvul.011G190600 Phaseolus vulgaris HOM05D003190 ORTHO05D003745 2.3e-09 65.1 39 69.2
GSVIVG01018273001 Vitis vinifera HOM05D003190 ORTHO05D003745 2.3e-09 65.1 39 69.2
Migut.B01538 Erythranthe guttata HOM05D003190 ORTHO05D003745 3.0e-09 64.7 42 61.9
HanXRQChr06g0167931 Helianthus annuus HOM05D003190 ORTHO05D003745 3.0e-09 64.7 46 65.2
HanXRQChr13g0414471 Helianthus annuus HOM05D003190 ORTHO05D003745 3.0e-09 64.7 39 66.7
Zm00001eb105310 Zea mays HOM05D003190 ORTHO05D003745 3.0e-09 64.7 39 71.8
AUR62023404 Chenopodium quinoa HOM05D003190 ORTHO05D003745 3.9e-09 64.3 42 61.9
Cc00_g22100 Coffea canephora HOM05D003190 ORTHO05D003745 3.9e-09 64.3 39 66.7
Aa31LG1G11460 Aethionema arabicum HOM05D003190 ORTHO05D003745 5.0e-09 63.9 45 64.4
DCAR_029466 Daucus carota HOM05D003190 ORTHO05D003745 5.0e-09 63.9 42 61.9
HanXRQChr02g0046721 Helianthus annuus HOM05D003190 ORTHO05D003745 5.0e-09 63.9 39 66.7
Oeu063237.1 Olea europaea HOM05D003190 ORTHO05D003745 5.0e-09 63.9 39 66.7
SGA_v2.0_scaffold52G19224 Striga asiatica HOM05D003190 ORTHO05D003745 5.0e-09 63.9 39 66.7
SEGI_01663 Sequoiadendron giganteum HOM05D003190 ORTHO05D003745 6.6e-09 63.5 42 61.9
TWI23G0403 Tripterygium wilfordii HOM05D003190 ORTHO05D003745 6.6e-09 63.5 42 57.1
Thhalv10008523m.g Eutrema salsugineum HOM05D003190 ORTHO05D003745 8.6e-09 63.2 39 64.1
FvH4_7g10110 Fragaria vesca HOM05D003190 ORTHO05D003745 8.6e-09 63.2 42 61.9
FAN01G1555 Fragaria x ananassa HOM05D003190 ORTHO05D003745 8.6e-09 63.2 42 61.9
FAN06G0700 Fragaria x ananassa HOM05D003190 ORTHO05D003745 8.6e-09 63.2 42 61.9
FAN10G1008 Fragaria x ananassa HOM05D003190 ORTHO05D003745 8.6e-09 63.2 42 61.9
FAN10G1064 Fragaria x ananassa HOM05D003190 ORTHO05D003745 8.6e-09 63.2 42 61.9
MD02G1211700 Malus domestica HOM05D003190 ORTHO05D003745 8.6e-09 63.2 39 66.7
QL12p009727 Quercus lobata HOM05D003190 ORTHO05D003745 8.6e-09 63.2 39 69.2
Zm00001eb321750 Zea mays HOM05D003190 ORTHO05D003745 8.6e-09 63.2 39 69.2
Oeu000052.1 Olea europaea HOM05D003190 ORTHO05D003745 1.1e-08 62.8 39 64.1
Os07g0490800 Oryza sativa ssp. japonica HOM05D003190 ORTHO05D003745 1.1e-08 62.8 39 66.7
Sed0021185 Sechium edule HOM05D003190 ORTHO05D003745 1.1e-08 62.8 42 61.9
Carub.0001s0013 Capsella rubella HOM05D003190 ORTHO05D003745 1.5e-08 62.4 39 66.7
Gohir.A08G029500 Gossypium hirsutum HOM05D003190 ORTHO05D003745 1.5e-08 62.4 40 65.0
HanXRQChr02g0039161 Helianthus annuus HOM05D003190 ORTHO05D003745 1.5e-08 62.4 39 64.1
MD07G1106400 Malus domestica HOM05D003190 ORTHO05D003745 1.5e-08 62.4 40 62.5
Pp3c15_22100 Physcomitrium patens HOM05D003190 ORTHO05D003745 1.5e-08 62.4 57 54.4
ATR0057G124 Amborella trichopoda HOM05D003190 ORTHO05D003745 1.9e-08 62.0 42 61.9
CDE04G0635 Ceratophyllum demersum HOM05D003190 ORTHO05D003745 1.9e-08 62.0 39 66.7
Thhalv10026057m.g Eutrema salsugineum HOM05D003190 ORTHO05D003745 1.9e-08 62.0 39 64.1
HanXRQChr13g0393921 Helianthus annuus HOM05D003190 ORTHO05D009990 1.9e-08 62.0 39 64.1
Prupe.2G129800 Prunus persica HOM05D003190 ORTHO05D003745 1.9e-08 62.0 39 64.1
RcHm_v2.0_Chr1g0347681 Rosa chinensis HOM05D003190 ORTHO05D003745 1.9e-08 62.0 42 59.5
Aqoxy3G02735 Aquilegia oxysepala HOM05D003190 ORTHO05D003745 2.5e-08 61.6 39 66.7
MD07G1107100 Malus domestica HOM05D003190 ORTHO05D003745 2.5e-08 61.6 39 64.1
PSO782G2887 Papaver somniferum HOM05D003190 ORTHO05D003745 2.5e-08 61.6 39 66.7
Atru.chr9.1248 Acer truncatum HOM05D003190 ORTHO05D003745 4.3e-08 60.8 42 59.5
AUR62013747 Chenopodium quinoa HOM05D003190 ORTHO05D003745 4.3e-08 60.8 42 59.5
Mapoly0041s0006 Marchantia polymorpha HOM05D003190 ORTHO05D003745 4.3e-08 60.8 54 55.6
Pp3c9_18560 Physcomitrium patens HOM05D003190 ORTHO05D003745 4.3e-08 60.8 57 52.6
Ciclev10021722m.g Citrus clementina HOM05D003190 ORTHO05D003745 7.3e-08 60.1 39 64.1
Lj9A558T43 Lonicera japonica HOM05D003190 ORTHO05D003745 7.3e-08 60.1 39 66.7
vmacro13493 Vaccinium macrocarpon HOM05D003190 ORTHO05D003745 7.3e-08 60.1 50 54.0
HanXRQChr09g0239891 Helianthus annuus HOM05D003190 ORTHO05D003745 9.5e-08 59.7 37 70.3
SMO239G0056 Selaginella moellendorffii HOM05D003190 ORTHO05D003745 1.2e-07 59.3 54 51.9
GSVIVG01004797001 Vitis vinifera HOM05D003190 ORTHO05D003745 1.2e-07 59.3 39 61.5
C08p54150 Brassica napus HOM05D003190 ORTHO05D003745 1.6e-07 58.9 39 59.0
Phvul.008G046600 Phaseolus vulgaris HOM05D003190 ORTHO05D003745 2.1e-07 58.5 39 59.0
HPP92_001540 Vanilla planifolia HOM05D000263 ORTHO05D000213 2.1e-07 58.5 39 61.5
BcaB03g13632 Brassica carinata HOM05D003190 ORTHO05D003745 2.8e-07 58.2 40 60.0
Glyma.18G252100 Glycine max HOM05D003190 ORTHO05D003745 3.6e-07 57.8 39 59.0
C05p00090 Brassica napus HOM05D003190 ORTHO05D003745 6.2e-07 57.0 39 59.0
BolC5t28796H Brassica oleracea HOM05D003190 ORTHO05D003745 6.2e-07 57.0 39 59.0
SGA_v2.0_scaffold153G36905 Striga asiatica HOM05D003190 ORTHO05D003745 8.1e-07 56.6 39 61.5
CBR_g6296 Chara braunii HOM05D000019 ORTHO05D000002 1.4e-06 55.8 54 50.0
SGA_v2.0_scaffold43G16535 Striga asiatica HOM05D003190 ORTHO05D003745 1.4e-06 55.8 56 50.0
VMungo0534G0001 Vigna mungo HOM05D003190 ORTHO05D003745 2.3e-06 55.1 39 53.8
TAR629G0358 Trochodendron aralioides HOM05D003190 ORTHO05D003745 5.2e-06 53.9 39 66.7
BraA10t42290Z Brassica rapa HOM05D003190 ORTHO05D003745 6.8e-06 53.5 38 57.9


User provided reference genes

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