Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0355101 Rosa chinensis HOM05D006065 ORTHO05D007672 1.2e-68 263.1 136 100.0
FAN01G0390 Fragaria x ananassa HOM05D006065 ORTHO05D007672 1.6e-49 199.5 136 79.4
FAN06G3027 Fragaria x ananassa HOM05D006065 ORTHO05D007672 1.6e-49 199.5 136 78.7
FAN06G3847 Fragaria x ananassa HOM05D006065 ORTHO05D007672 2.1e-49 199.1 136 78.7
FAN03G2883 Fragaria x ananassa HOM05D006065 ORTHO05D007672 6.2e-49 197.6 136 77.9
FvH4_7g14190 Fragaria vesca HOM05D006065 ORTHO05D007672 1.1e-48 196.8 136 77.9
FAN10G0270 Fragaria x ananassa HOM05D006065 ORTHO05D007672 1.5e-47 193.0 136 77.2
Prupe.2G168300 Prunus persica HOM05D006065 ORTHO05D007672 7.6e-39 164.1 135 62.2
CANSAT56G3634 Cannabis sativa HOM05D006065 ORTHO05D007672 2.1e-33 146.0 131 58.0
CiPaw.01G060100 Carya illinoinensis HOM05D006065 ORTHO05D007672 1.0e-30 137.1 130 56.9
Dinv43807 Davidia involucrata HOM05D006065 ORTHO05D007672 1.7e-30 136.3 140 54.3
Actinidia10016 Actinidia chinensis HOM05D006065 ORTHO05D007672 6.5e-30 134.4 134 55.2
Dinv32472 Davidia involucrata HOM05D006065 ORTHO05D007672 1.2e-28 130.2 136 55.1
COL.COLO4_12704 Corchorus olitorius HOM05D006065 ORTHO05D007672 4.6e-28 128.3 130 53.1
Actinidia20914 Actinidia chinensis HOM05D006065 ORTHO05D007672 7.9e-28 127.5 133 54.1
Cfa003936 Carpinus fangiana HOM05D006065 ORTHO05D007672 8.7e-27 124.0 136 49.3
Atru.chr5.461 Acer truncatum HOM05D006065 ORTHO05D007672 2.5e-26 122.5 139 51.8
Thecc.01G360200 Theobroma cacao HOM05D006065 ORTHO05D007672 2.5e-26 122.5 136 52.9
QL08p049008 Quercus lobata HOM05D006065 ORTHO05D007672 3.7e-25 118.6 126 52.4
PGSC0003DMG400000036 Solanum tuberosum HOM05D006065 ORTHO05D007672 6.3e-25 117.9 139 51.8
Cpa.g.sc18.247 Carica papaya HOM05D006065 ORTHO05D007672 1.8e-24 116.3 142 47.2
Hund16927 Selenicereus undatus HOM05D006065 ORTHO05D007672 3.1e-24 115.5 140 45.0
Gohir.D08G152500 Gossypium hirsutum HOM05D006065 ORTHO05D007672 5.3e-24 114.8 135 50.4
Potri.014G083100 Populus trichocarpa HOM05D006065 ORTHO05D007672 5.3e-24 114.8 128 50.8
Gohir.A08G131000 Gossypium hirsutum HOM05D006065 ORTHO05D007672 1.2e-23 113.6 135 50.4
GSVIVG01018349001 Vitis vinifera HOM05D006065 ORTHO05D007672 1.2e-23 113.6 115 52.2
CAN.G78.55 Capsicum annuum HOM05D006065 ORTHO05D007672 1.5e-23 113.2 133 51.9
Ciclev10022632m.g Citrus clementina HOM05D006065 ORTHO05D007672 1.5e-23 113.2 135 46.7
Sc01g0003370 Simmondsia chinensis HOM05D006065 ORTHO05D007672 2.0e-23 112.8 134 47.8
Duzib133G1075 Durio zibethinus HOM05D006065 ORTHO05D007672 2.6e-23 112.5 132 49.2
Gorai.004G158400 Gossypium raimondii HOM05D006065 ORTHO05D007672 2.6e-23 112.5 135 49.6
Sed0025321 Sechium edule HOM05D006065 ORTHO05D007672 2.6e-23 112.5 138 47.1
Haze_15490 Corylus avellana HOM05D006065 ORTHO05D007672 4.5e-23 111.7 179 39.7
DCAR_006926 Daucus carota HOM05D006065 ORTHO05D007672 4.5e-23 111.7 134 51.5
Sopen01g038320 Solanum pennellii HOM05D006065 ORTHO05D007672 5.9e-23 111.3 130 52.3
Sabra14G0060500 Salix brachista HOM05D006065 ORTHO05D007672 7.6e-23 110.9 126 50.0
Hma1.2p1_0001F.1_g001420 Hydrangea macrophylla HOM05D006065 ORTHO05D007672 1.3e-22 110.2 153 44.4
Aqoxy7G00322 Aquilegia oxysepala HOM05D006065 ORTHO05D007672 2.2e-22 109.4 125 44.8
CsaV3_3G008970 Cucumis sativus L. HOM05D006065 ORTHO05D007672 5.0e-22 108.2 138 48.6
ClCG05G001580 Citrullus lanatus HOM05D006065 ORTHO05D007672 6.5e-22 107.8 135 46.7
Duzib138G1923 Durio zibethinus HOM05D006065 ORTHO05D007672 6.5e-22 107.8 131 45.8
GSVIVG01026900001 Vitis vinifera HOM05D006065 ORTHO05D007672 6.5e-22 107.8 115 50.4
MD07G1138600 Malus domestica HOM05D006065 ORTHO05D007672 1.4e-21 106.7 116 55.2
Manes.05G035300 Manihot esculenta HOM05D006065 ORTHO05D007672 1.4e-21 106.7 145 45.5
vmacro13279 Vaccinium macrocarpon HOM05D006065 ORTHO05D007672 1.9e-21 106.3 146 45.9
TAR629G3005 Trochodendron aralioides HOM05D006065 ORTHO05D007672 2.5e-21 105.9 147 44.2
TWI59G0879 Tripterygium wilfordii HOM05D006065 ORTHO05D007672 3.2e-21 105.5 130 51.5
Gorai.007G098900 Gossypium raimondii HOM05D006065 ORTHO05D007672 4.2e-21 105.1 129 45.0
Medtr7g076690 Medicago truncatula HOM05D006065 ORTHO05D007672 5.5e-21 104.8 132 44.7
CiPaw.02G030100 Carya illinoinensis HOM05D006065 ORTHO05D007672 1.2e-20 103.6 118 48.3
Sabra02G0126300 Salix brachista HOM05D006065 ORTHO05D007672 1.2e-20 103.6 125 46.4
Cc02_g37900 Coffea canephora HOM05D006065 ORTHO05D007672 2.7e-20 102.4 125 51.2
SalBow3G2602 Salvia bowleyana HOM05D006065 ORTHO05D007672 2.7e-20 102.4 132 46.2
Glyma.09G262200 Glycine max HOM05D006065 ORTHO05D007672 7.9e-20 100.9 140 42.9
Lj1g0009386 Lotus japonicus HOM05D006065 ORTHO05D007672 2.3e-19 99.4 130 46.9
Oeu010611.1 Olea europaea HOM05D006065 ORTHO05D007672 2.3e-19 99.4 143 43.4
Ah.05g180670 Amaranthus hybridus HOM05D006065 ORTHO05D007672 3.9e-19 98.6 123 43.9
THA.LOC104817023 Tarenaya hassleriana HOM05D006065 ORTHO05D007672 3.9e-19 98.6 134 40.3
Glyma.18G230000 Glycine max HOM05D006065 ORTHO05D007672 5.1e-19 98.2 139 43.9
Manes.01G258100 Manihot esculenta HOM05D006065 ORTHO05D007672 5.1e-19 98.2 128 46.9
Migut.N01441 Erythranthe guttata HOM05D006065 ORTHO05D007672 8.8e-19 97.4 148 39.2
MBI18_g21561_MAGBIO Magnolia biondii HOM05D006065 ORTHO05D007672 8.8e-19 97.4 136 40.4
Peaxi162Scf00020g00240 Petunia axillaris HOM05D006065 ORTHO05D007672 8.8e-19 97.4 121 47.9
MSTRG.4858 Avicennia marina HOM05D006065 ORTHO05D007672 1.1e-18 97.1 146 39.0
Ca_07890_v3 Cicer arietinum L. HOM05D006065 ORTHO05D007672 1.5e-18 96.7 132 43.2
VMungo1383G0981 Vigna mungo HOM05D006065 ORTHO05D007672 1.5e-18 96.7 135 40.0
TAR374G1295 Trochodendron aralioides HOM05D006065 ORTHO05D007672 5.7e-18 94.7 136 44.1
arahy.Tifrunner.gnm1.ann1.QD83TI Arachis hypogaea HOM05D006065 ORTHO05D007672 1.3e-17 93.6 132 40.9
Sed0021596 Sechium edule HOM05D006065 ORTHO05D007672 1.3e-17 93.6 137 43.1
SGA_v2.0_scaffold11G05664 Striga asiatica HOM05D006065 ORTHO05D007672 1.3e-17 93.6 151 39.1
unitig_8.g3395 Utricularia gibba HOM05D006065 ORTHO05D007672 1.3e-17 93.6 136 39.0
PGR031G0376 Punica granatum HOM05D006065 ORTHO05D007672 2.2e-17 92.8 137 40.1
PGSC0003DMG400021646 Solanum tuberosum HOM05D006065 ORTHO05D007672 2.8e-17 92.4 114 46.5
Lalb_Chr19g0127061 Lupinus albus HOM05D006065 ORTHO05D007672 6.3e-17 91.3 128 37.5
Phvul.008G067900 Phaseolus vulgaris HOM05D006065 ORTHO05D007672 8.2e-17 90.9 127 41.7
Nitab4.5_0008002g0050 Nicotiana tabacum HOM05D006065 ORTHO05D007672 1.1e-16 90.5 124 45.2
Sopen05g028300 Solanum pennellii HOM05D006065 ORTHO05D007672 1.1e-16 90.5 116 46.6
TPR.G37820 Trifolium pratense HOM05D006065 ORTHO05D007672 1.1e-16 90.5 135 40.0
AT4G00525 Arabidopsis thaliana HOM05D006065 ORTHO05D007672 1.4e-16 90.1 142 40.1
HanXRQChr13g0426531 Helianthus annuus HOM05D006065 ORTHO05D007672 1.4e-16 90.1 131 39.7
EL10Ac1g00426 Beta vulgaris HOM05D006065 ORTHO05D007672 1.8e-16 89.7 110 47.3
Lsat_1_v5_gn_7_4500 Lactuca sativa HOM05D006065 ORTHO05D007672 1.8e-16 89.7 128 44.5
Nitab4.5_0001702g0100 Nicotiana tabacum HOM05D006065 ORTHO05D007672 1.8e-16 89.7 118 45.8
Solyc05g049940.3 Solanum lycopersicum HOM05D006065 ORTHO05D007672 1.8e-16 89.7 116 46.6
MSTRG.28221 Avicennia marina HOM05D006065 ORTHO05D007672 2.4e-16 89.4 127 40.2
Thhalv10029047m.g Eutrema salsugineum HOM05D006065 ORTHO05D007672 4.1e-16 88.6 139 41.0
Gohir.A11G088300 Gossypium hirsutum HOM05D006065 ORTHO05D007672 5.3e-16 88.2 130 39.2
Gohir.D11G092600 Gossypium hirsutum HOM05D006065 ORTHO05D007672 5.3e-16 88.2 130 39.2
TWI14G0791 Tripterygium wilfordii HOM05D006065 ORTHO05D007672 6.9e-16 87.8 140 40.0
Aa31LG5G450 Aethionema arabicum HOM05D006065 ORTHO05D007672 9.1e-16 87.4 132 37.9
BraA03t12384Z Brassica rapa HOM05D006065 ORTHO05D007672 1.0e-14 84.0 130 39.2
Carub.0006s3674 Capsella rubella HOM05D006065 ORTHO05D007672 1.0e-14 84.0 141 39.0
Nitab4.5_0005277g0010 Nicotiana tabacum HOM05D006065 ORTHO05D007672 1.3e-14 83.6 124 41.9
Sp6g00560 Schrenkiella parvula HOM05D006065 ORTHO05D007672 1.3e-14 83.6 137 40.1
Psat3g110920 Pisum sativum HOM05D006065 ORTHO05D007672 1.7e-14 83.2 131 40.5
A03p32140 Brassica napus HOM05D006065 ORTHO05D007672 2.2e-14 82.8 127 39.4
SGA_v2.0_scaffold43G16421 Striga asiatica HOM05D006065 ORTHO05D007672 2.9e-14 82.4 143 39.9
arahy.Tifrunner.gnm1.ann1.WJC6IK Arachis hypogaea HOM05D006065 ORTHO05D007672 6.5e-14 81.3 168 33.3
CDE06G0574 Ceratophyllum demersum HOM05D006065 ORTHO05D007672 1.4e-13 80.1 128 35.2
BcaC01g06870 Brassica carinata HOM05D006065 ORTHO05D007672 1.9e-13 79.7 127 38.6
BcaNung05355 Brassica carinata HOM05D006065 ORTHO05D007672 1.9e-13 79.7 127 38.6
BolC3t16187H Brassica oleracea HOM05D006065 ORTHO05D007672 1.9e-13 79.7 127 38.6
PSO832G3783 Papaver somniferum HOM05D006065 ORTHO05D007672 1.9e-13 79.7 139 38.1
Eucgr.D02286 Eucalyptus grandis HOM05D006065 ORTHO05D007672 2.5e-13 79.3 120 41.7
PSO210G7571 Papaver somniferum HOM05D006065 ORTHO05D007672 1.2e-12 77.0 139 34.5
HPP92_008504 Vanilla planifolia HOM05D006065 ORTHO05D007672 6.1e-12 74.7 136 33.8
Rhsim07G0016100 Rhododendron simsii HOM05D006065 ORTHO05D007672 1.4e-11 73.6 215 30.7
MD01G1057900 Malus domestica HOM05D006065 ORTHO05D007672 3.3e-10 68.9 67 56.7
AL6G52950 Arabidopsis lyrata HOM05D006065 ORTHO05D007672 1.7e-09 66.6 147 32.7
Solyc01g094510.2 Solanum lycopersicum HOM05D006065 ORTHO05D007672 2.8e-09 65.9 100 45.0
Oeu020560.2 Olea europaea HOM05D006065 ORTHO05D007672 1.4e-08 63.5 200 27.5
AL1G10640 Arabidopsis lyrata HOM05D006065 ORTHO05D007672 4.1e-08 62.0 145 30.3
AUR62022552 Chenopodium quinoa HOM05D006065 ORTHO05D007672 1.2e-07 60.5 88 39.8
AUR62004346 Chenopodium quinoa HOM05D006065 ORTHO05D007672 2.0e-07 59.7 90 38.9
Os04g0558500 Oryza sativa ssp. japonica HOM05D006065 ORTHO05D007672 4.5e-07 58.5 120 31.7
TAR375G0974 Trochodendron aralioides HOM05D006065 ORTHO05D007672 5.9e-07 58.2 66 50.0
AT1G01715 Arabidopsis thaliana HOM05D006065 ORTHO05D007672 1.0e-06 57.4 128 28.9
CDE02G4271 Ceratophyllum demersum HOM05D000667 ORTHO05D009057 1.3e-06 57.0 104 30.8
MELO3C006115.2 Cucumis melo HOM05D006065 ORTHO05D007672 2.9e-06 55.8 98 39.8
SEGI_06767 Sequoiadendron giganteum HOM05D006065 ORTHO05D007672 6.5e-06 54.7 127 27.6
Potri.002G159100 Populus trichocarpa HOM05D006065 ORTHO05D007672 8.5e-06 54.3 53 52.8


User provided reference genes

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