Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0355061 Rosa chinensis HOM05D007705 ORTHO05D009720 4.6e-36 154.1 79 100.0
FvH4_7g14160 Fragaria vesca HOM05D007705 ORTHO05D009720 1.8e-32 142.1 79 89.9
FAN03G0317 Fragaria x ananassa HOM05D007705 ORTHO05D009720 1.8e-32 142.1 79 89.9
FAN06G1915 Fragaria x ananassa HOM05D007705 ORTHO05D009720 1.8e-32 142.1 79 89.9
FAN10G2029 Fragaria x ananassa HOM05D007705 ORTHO05D009720 1.8e-32 142.1 79 89.9
FAN10G0144 Fragaria x ananassa HOM05D003942 ORTHO05D004527 7.6e-31 136.7 78 85.9
RcHm_v2.0_Chr1g0354811 Rosa chinensis HOM05D007705 ORTHO05D009720 3.8e-30 134.4 79 88.6
FAN01G1472 Fragaria x ananassa HOM05D007705 ORTHO05D009720 5.1e-27 124.0 115 61.7
RcHm_v2.0_Chr4g0404631 Rosa chinensis HOM05D007705 ORTHO05D009720 2.5e-26 121.7 76 84.2
Prupe.2G168000 Prunus persica HOM05D007705 ORTHO05D009720 4.3e-26 120.9 79 77.2
FAN06G1047 Fragaria x ananassa HOM05D007705 ORTHO05D009720 2.1e-25 118.6 109 63.3
MD07G1139100 Malus domestica HOM05D007705 ORTHO05D009720 2.4e-24 115.2 79 70.9
TWI14G1368 Tripterygium wilfordii HOM05D007705 ORTHO05D009720 6.9e-24 113.6 76 72.4
CANSAT56G1956 Cannabis sativa HOM05D007705 ORTHO05D009720 9.0e-24 113.2 80 71.2
Atru.chr5.465 Acer truncatum HOM05D007705 ORTHO05D009720 4.4e-23 110.9 79 72.2
Ciclev10023145m.g Citrus clementina HOM05D007705 ORTHO05D009720 4.4e-23 110.9 80 72.5
Sed0019596 Sechium edule HOM05D007705 ORTHO05D009720 9.9e-23 109.8 79 65.8
ClCG05G001590 Citrullus lanatus HOM05D007705 ORTHO05D009720 8.4e-22 106.7 79 68.4
FAN10G1187 Fragaria x ananassa HOM05D007705 ORTHO05D009720 3.2e-21 104.8 79 70.9
Rhsim07G0016500 Rhododendron simsii HOM05D007705 ORTHO05D009720 4.2e-21 104.4 82 69.5
Cpa.g.sc18.244 Carica papaya HOM05D007705 ORTHO05D009720 7.1e-21 103.6 75 72.0
Duzib133G1093 Durio zibethinus HOM05D007705 ORTHO05D009720 1.2e-20 102.8 79 68.4
Thecc.01G360600 Theobroma cacao HOM05D007705 ORTHO05D009720 1.2e-20 102.8 79 69.6
CiPaw.01G059800 Carya illinoinensis HOM05D007705 ORTHO05D009720 1.6e-20 102.4 79 63.3
MSTRG.28220 Avicennia marina HOM05D007705 ORTHO05D009720 2.1e-20 102.1 79 62.0
CsaV3_3G008980 Cucumis sativus L. HOM05D007705 ORTHO05D009720 2.7e-20 101.7 76 64.5
MELO3C006116.2 Cucumis melo HOM05D007705 ORTHO05D009720 3.5e-20 101.3 76 64.5
Eucgr.D02283 Eucalyptus grandis HOM05D007705 ORTHO05D009720 3.5e-20 101.3 65 76.9
Nn1g01504 Nelumbo nucifera HOM05D007705 ORTHO05D009720 4.6e-20 100.9 79 64.6
Peaxi162Scf00008g02124 Petunia axillaris HOM05D007705 ORTHO05D009720 4.6e-20 100.9 76 65.8
Cc02_g37860 Coffea canephora HOM05D007705 ORTHO05D009720 6.0e-20 100.5 79 64.6
CSS0048404 Camellia sinensis var. sinensis HOM05D007705 ORTHO05D009720 7.8e-20 100.1 56 85.7
PGR031G2440 Punica granatum HOM05D007705 ORTHO05D009720 7.8e-20 100.1 79 65.8
Sc23g0003000 Simmondsia chinensis HOM05D007705 ORTHO05D009720 1.7e-19 99.0 78 62.8
CAN.G116.6 Capsicum annuum HOM05D007705 ORTHO05D009720 2.3e-19 98.6 72 68.1
Gohir.D08G152400 Gossypium hirsutum HOM05D007705 ORTHO05D009720 2.3e-19 98.6 79 65.8
Sed0007089 Sechium edule HOM05D007705 ORTHO05D009720 2.3e-19 98.6 79 60.8
Lsat_1_v5_gn_4_36241 Lactuca sativa HOM05D007705 ORTHO05D009720 3.0e-19 98.2 71 71.8
GSVIVG01026894001 Vitis vinifera HOM05D007705 ORTHO05D009720 3.0e-19 98.2 62 77.4
Lj3g0020568 Lotus japonicus HOM05D007705 ORTHO05D009720 5.1e-19 97.4 80 65.0
Glyma.18G231800 Glycine max HOM05D007705 ORTHO05D009720 1.1e-18 96.3 79 64.6
Manes.01G258400 Manihot esculenta HOM05D007705 ORTHO05D009720 1.1e-18 96.3 58 81.0
SalBow5G0166 Salvia bowleyana HOM05D007705 ORTHO05D009720 1.1e-18 96.3 77 58.4
HanXRQChr16g0522821 Helianthus annuus HOM05D007705 ORTHO05D009720 1.5e-18 95.9 65 72.3
Phvul.010G097400 Phaseolus vulgaris HOM05D007705 ORTHO05D009720 1.5e-18 95.9 79 62.0
arahy.Tifrunner.gnm1.ann1.SPA1YZ Arachis hypogaea HOM05D007705 ORTHO05D009720 1.9e-18 95.5 79 59.5
Gohir.A08G130900 Gossypium hirsutum HOM05D007705 ORTHO05D009720 1.9e-18 95.5 79 62.0
Gorai.004G158300 Gossypium raimondii HOM05D007705 ORTHO05D009720 1.9e-18 95.5 79 65.8
arahy.Tifrunner.gnm1.ann1.P4N769 Arachis hypogaea HOM05D007705 ORTHO05D009720 2.5e-18 95.1 79 59.5
Carub.0006s3673 Capsella rubella HOM05D007705 ORTHO05D009720 2.5e-18 95.1 61 73.8
Hund16929 Selenicereus undatus HOM05D007705 ORTHO05D009720 2.5e-18 95.1 79 59.5
TPR.G15966 Trifolium pratense HOM05D007705 ORTHO05D009720 2.5e-18 95.1 79 60.8
PGSC0003DMG400010270 Solanum tuberosum HOM05D007705 ORTHO05D009720 3.3e-18 94.7 76 61.8
Aqoxy2G01039 Aquilegia oxysepala HOM05D007705 ORTHO05D009720 5.6e-18 94.0 79 60.8
Aa31LG1G11090 Aethionema arabicum HOM05D007705 ORTHO05D009720 7.3e-18 93.6 64 70.3
EL10Ac1g00428 Beta vulgaris HOM05D003942 ORTHO05D004527 9.6e-18 93.2 75 58.7
CDE02G0341 Ceratophyllum demersum HOM05D007705 ORTHO05D009720 9.6e-18 93.2 73 63.0
Migut.N01439 Erythranthe guttata HOM05D007705 ORTHO05D009720 1.3e-17 92.8 82 56.1
Medtr8g031010 Medicago truncatula HOM05D007705 ORTHO05D009720 1.3e-17 92.8 80 62.5
AT4G00530 Arabidopsis thaliana HOM05D007705 ORTHO05D009720 2.1e-17 92.0 61 72.1
AL6G52940 Arabidopsis lyrata HOM05D007705 ORTHO05D009720 2.8e-17 91.7 61 73.8
PSO478G4887 Papaver somniferum HOM05D007705 ORTHO05D009720 3.6e-17 91.3 70 62.9
THA.LOC104801441 Tarenaya hassleriana HOM05D007705 ORTHO05D009720 3.6e-17 91.3 60 71.7
Lalb_Chr17g0339761 Lupinus albus HOM05D007705 ORTHO05D009720 6.2e-17 90.5 79 58.2
Potri.014G082800 Populus trichocarpa HOM05D007705 ORTHO05D009720 8.1e-17 90.1 57 73.7
Ah.05g180700 Amaranthus hybridus HOM05D007705 ORTHO05D009720 1.1e-16 89.7 58 70.7
Thhalv10009285m.g Eutrema salsugineum HOM05D007705 ORTHO05D009720 1.1e-16 89.7 60 73.3
Glyma.03G010900 Glycine max HOM05D007705 ORTHO05D009720 1.8e-16 89.0 79 59.5
CARHR248690 Cardamine hirsuta HOM05D007705 ORTHO05D009720 2.4e-16 88.6 61 70.5
AUR62004343 Chenopodium quinoa HOM05D007705 ORTHO05D009720 2.4e-16 88.6 75 57.3
BcaB03g13609 Brassica carinata HOM05D007705 ORTHO05D009720 4.0e-16 87.8 60 71.7
A10p00310 Brassica napus HOM05D007705 ORTHO05D009720 5.3e-16 87.4 57 75.4
C05p00320 Brassica napus HOM05D007705 ORTHO05D009720 5.3e-16 87.4 57 75.4
BolC5t28822H Brassica oleracea HOM05D007705 ORTHO05D009720 5.3e-16 87.4 57 75.4
BraA10t42308Z Brassica rapa HOM05D007705 ORTHO05D009720 5.3e-16 87.4 57 75.4
Sp1g00580 Schrenkiella parvula HOM05D007705 ORTHO05D009720 5.3e-16 87.4 60 71.7
arahy.Tifrunner.gnm1.ann1.ELVS11 Arachis hypogaea HOM05D007705 ORTHO05D009720 1.5e-15 85.9 80 56.2
CARHR000600 Cardamine hirsuta HOM05D007705 ORTHO05D009720 1.5e-15 85.9 58 70.7
arahy.Tifrunner.gnm1.ann1.5FJ7GX Arachis hypogaea HOM05D007705 ORTHO05D009720 2.0e-15 85.5 80 57.5
AT1G01725 Arabidopsis thaliana HOM05D007705 ORTHO05D009720 2.2e-14 82.0 58 65.5
ATR0680G396 Amborella trichopoda HOM05D007705 ORTHO05D009720 2.9e-14 81.6 61 63.9
arahy.Tifrunner.gnm1.ann1.1PM303 Arachis hypogaea HOM05D007705 ORTHO05D009720 3.8e-14 81.3 58 63.8
unitig_22.g6810 Utricularia gibba HOM05D007705 ORTHO05D009720 3.8e-14 81.3 80 53.8
arahy.Tifrunner.gnm1.ann1.UQ99Y2 Arachis hypogaea HOM05D007705 ORTHO05D009720 2.4e-13 78.6 80 51.2
MBI18_g25521_MAGBIO Magnolia biondii HOM05D007705 ORTHO05D009720 7.1e-13 77.0 77 51.9
Sabra14G0060000 Salix brachista HOM05D007705 ORTHO05D009720 7.1e-13 77.0 85 50.6
FAN28G2457 Fragaria x ananassa HOM05D007705 ORTHO05D009720 1.2e-12 76.3 41 87.8
SHI13438 Sapria himalayana HOM05D007705 ORTHO05D009720 6.0e-12 73.9 58 55.2
ECA234G1137 Erigeron canadensis HOM05D003942 ORTHO05D004527 1.0e-11 73.2 47 72.3
Nitab4.5_0007064g0050 Nicotiana tabacum HOM05D007705 ORTHO05D009720 1.0e-11 73.2 42 81.0
COL.COLO4_12699 Corchorus olitorius HOM05D007705 ORTHO05D009720 1.8e-11 72.4 43 74.4
VMungo0331G1758 Vigna mungo HOM05D007705 ORTHO05D009720 2.3e-11 72.0 68 55.9
Nitab4.5_0000386g0120 Nicotiana tabacum HOM05D007705 ORTHO05D009720 1.9e-10 68.9 42 78.6
Hma1.2p1_0001F.1_g001390 Hydrangea macrophylla HOM05D007705 ORTHO05D009720 5.3e-08 60.8 38 68.4


User provided reference genes

Program Settings