Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0354801 Rosa chinensis HOM05D005367 ORTHO05D006328 2.4e-96 355.5 180 100.0
RcHm_v2.0_Chr1g0355051 Rosa chinensis HOM05D005367 ORTHO05D006328 6.0e-84 314.3 180 89.4
FAN10G0042 Fragaria x ananassa HOM05D005367 ORTHO05D006328 9.3e-69 263.8 180 77.2
FAN01G2456 Fragaria x ananassa HOM05D005367 ORTHO05D006328 1.2e-68 263.5 180 77.2
FAN03G1221 Fragaria x ananassa HOM05D005367 ORTHO05D006328 6.1e-68 261.2 180 76.7
FvH4_7g14150 Fragaria vesca HOM05D005367 ORTHO05D006328 3.9e-67 258.5 180 76.7
FAN06G0563 Fragaria x ananassa HOM05D005367 ORTHO05D006328 3.3e-66 255.4 180 75.6
Prupe.2G167900 Prunus persica HOM05D005367 ORTHO05D006328 5.7e-50 201.4 198 60.1
FAN10G0871 Fragaria x ananassa HOM05D005367 ORTHO05D006328 2.9e-46 189.1 131 77.1
FAN10G3879 Fragaria x ananassa HOM05D005367 ORTHO05D006328 1.2e-44 183.7 131 75.6
MD07G1139200 Malus domestica HOM05D005367 ORTHO05D006328 2.9e-38 162.5 189 50.3
MD01G1057500 Malus domestica HOM05D005367 ORTHO05D006328 1.1e-37 160.6 190 50.5
FAN10G1555 Fragaria x ananassa HOM05D005367 ORTHO05D006328 1.6e-36 156.8 102 76.5
TWI14G0016 Tripterygium wilfordii HOM05D005367 ORTHO05D006328 2.7e-36 156.0 187 48.7
GSVIVG01026893001 Vitis vinifera HOM05D005367 ORTHO05D006328 6.8e-35 151.4 184 49.5
Dinv43805 Davidia involucrata HOM05D005367 ORTHO05D006328 9.8e-34 147.5 181 46.4
CSS0040093 Camellia sinensis var. sinensis HOM05D005367 ORTHO05D006328 2.8e-33 146.0 157 49.7
Ciclev10021865m.g Citrus clementina HOM05D005367 ORTHO05D006328 4.8e-33 145.2 197 44.2
Haze_15487 Corylus avellana HOM05D005367 ORTHO05D006328 8.3e-33 144.4 210 43.8
FAN28G3009 Fragaria x ananassa HOM05D005367 ORTHO05D006328 1.1e-32 144.1 107 73.8
FAN10G2377 Fragaria x ananassa HOM05D005367 ORTHO05D006328 4.1e-32 142.1 114 68.4
Actinidia20916 Actinidia chinensis HOM05D005367 ORTHO05D006328 5.4e-32 141.7 154 48.1
Hma1.2p1_0001F.1_g001380 Hydrangea macrophylla HOM05D005367 ORTHO05D006328 9.1e-32 141.0 187 43.9
CSS0033809 Camellia sinensis var. sinensis HOM05D005367 ORTHO05D006328 2.0e-31 139.8 157 47.1
Cfa003939 Carpinus fangiana HOM05D005367 ORTHO05D006328 4.5e-31 138.7 214 42.5
MELO3C021217.2 Cucumis melo HOM05D005367 ORTHO05D006328 7.7e-31 137.9 178 46.6
QL08p049031 Quercus lobata HOM05D005367 ORTHO05D006328 7.7e-31 137.9 158 46.2
Duzib133G0249 Durio zibethinus HOM05D005367 ORTHO05D006328 1.0e-30 137.5 192 45.8
PGR031G3282 Punica granatum HOM05D005367 ORTHO05D006328 1.3e-30 137.1 165 45.5
MSTRG.20826 Avicennia marina HOM05D005367 ORTHO05D006328 8.6e-30 134.4 158 44.9
CiPaw.02G029900 Carya illinoinensis HOM05D005367 ORTHO05D006328 8.6e-30 134.4 211 40.8
Atru.chr5.466 Acer truncatum HOM05D005367 ORTHO05D006328 1.1e-29 134.0 172 44.8
ClCG06G003800 Citrullus lanatus HOM05D005367 ORTHO05D006328 1.1e-29 134.0 189 46.0
Glyma.18G231900 Glycine max HOM05D005367 ORTHO05D006328 1.1e-29 134.0 175 46.9
Lalb_Chr24g0401631 Lupinus albus HOM05D005367 ORTHO05D006328 1.1e-29 134.0 150 46.7
Potri.002G158500 Populus trichocarpa HOM05D005367 ORTHO05D006328 1.5e-29 133.7 156 47.4
TWI59G0064 Tripterygium wilfordii HOM05D005367 ORTHO05D006328 1.9e-29 133.3 171 45.0
SGA_v2.0_scaffold11G05663 Striga asiatica HOM05D000368 ORTHO05D006328 3.2e-29 132.5 157 43.3
COL.COLO4_12698 Corchorus olitorius HOM05D005367 ORTHO05D006328 4.2e-29 132.1 227 39.6
Cc02_g37850 Coffea canephora HOM05D005367 ORTHO05D006328 5.5e-29 131.7 161 44.7
Potri.014G082600 Populus trichocarpa HOM05D005367 ORTHO05D006328 1.6e-28 130.2 160 45.6
TAR375G0799 Trochodendron aralioides HOM05D005367 ORTHO05D006328 1.6e-28 130.2 192 43.8
Thecc.01G360700 Theobroma cacao HOM05D005367 ORTHO05D006328 2.1e-28 129.8 203 43.8
PGR042G0868 Punica granatum HOM05D005367 ORTHO05D006328 2.8e-28 129.4 191 39.3
Sopen05g028210 Solanum pennellii HOM05D005367 ORTHO05D006328 3.6e-28 129.0 196 41.3
Eucgr.D02282 Eucalyptus grandis HOM05D005367 ORTHO05D006328 4.7e-28 128.6 193 43.0
Nn1g01501 Nelumbo nucifera HOM05D005367 ORTHO05D006328 4.7e-28 128.6 193 40.9
Eucgr.E00158 Eucalyptus grandis HOM05D005367 ORTHO05D006328 6.1e-28 128.3 149 47.0
Solyc05g049880.3 Solanum lycopersicum HOM05D005367 ORTHO05D006328 6.1e-28 128.3 196 41.3
TAR636G2389 Trochodendron aralioides HOM05D003133 ORTHO05D003642 6.1e-28 128.3 202 39.6
CsaV3_6G000470 Cucumis sativus L. HOM05D005367 ORTHO05D006328 8.0e-28 127.9 166 47.0
Manes.05G036200 Manihot esculenta HOM05D005367 ORTHO05D006328 8.0e-28 127.9 169 45.0
Nitab4.5_0001702g0150 Nicotiana tabacum HOM05D005367 ORTHO05D006328 8.0e-28 127.9 164 42.1
Nitab4.5_0008050g0010 Nicotiana tabacum HOM05D005367 ORTHO05D006328 1.0e-27 127.5 186 40.3
Lalb_Chr01g0011531 Lupinus albus HOM05D005367 ORTHO05D006328 1.4e-27 127.1 180 42.8
THA.LOC104801446 Tarenaya hassleriana HOM05D005367 ORTHO05D006328 1.4e-27 127.1 156 44.9
PGSC0003DMG400021656 Solanum tuberosum HOM05D005367 ORTHO05D006328 2.3e-27 126.3 196 39.8
Gohir.D11G092400 Gossypium hirsutum HOM05D005367 ORTHO05D006328 4.0e-27 125.6 211 41.2
SalBow3G2019 Salvia bowleyana HOM05D005367 ORTHO05D006328 4.0e-27 125.6 152 43.4
Gorai.007G098700 Gossypium raimondii HOM05D005367 ORTHO05D006328 5.2e-27 125.2 212 41.5
Cpa.g.sc18.245 Carica papaya HOM05D005367 ORTHO05D006328 6.8e-27 124.8 211 38.9
vmacro13291 Vaccinium macrocarpon HOM05D005367 ORTHO05D006328 8.8e-27 124.4 153 43.8
VMungo1383G2792 Vigna mungo HOM05D005367 ORTHO05D006328 8.8e-27 124.4 149 47.7
Migut.B01742 Erythranthe guttata HOM05D005367 ORTHO05D006328 1.2e-26 124.0 157 42.7
Gohir.A08G130800 Gossypium hirsutum HOM05D005367 ORTHO05D006328 2.6e-26 122.9 188 41.0
Gohir.A11G088100 Gossypium hirsutum HOM05D005367 ORTHO05D006328 2.6e-26 122.9 169 43.2
Gohir.D08G152300 Gossypium hirsutum HOM05D005367 ORTHO05D006328 2.6e-26 122.9 188 42.0
Gorai.004G158200 Gossypium raimondii HOM05D005367 ORTHO05D006328 2.6e-26 122.9 188 41.0
Ca_07909_v3 Cicer arietinum L. HOM05D005367 ORTHO05D006328 3.4e-26 122.5 172 41.9
Peaxi162Scf00191g01425 Petunia axillaris HOM05D005367 ORTHO05D006328 7.5e-26 121.3 169 40.2
Phvul.008G065800 Phaseolus vulgaris HOM05D005367 ORTHO05D006328 9.8e-26 120.9 157 45.9
CANSAT56G3377 Cannabis sativa HOM05D005367 ORTHO05D006328 1.7e-25 120.2 164 42.7
Oeu056369.1 Olea europaea HOM05D005367 ORTHO05D006328 3.7e-25 119.0 178 39.3
Manes.01G258500 Manihot esculenta HOM05D005367 ORTHO05D006328 6.3e-25 118.2 224 38.4
Lj9A582T87 Lonicera japonica HOM05D005367 ORTHO05D006328 8.3e-25 117.9 164 40.2
Lj1g0004821 Lotus japonicus HOM05D005367 ORTHO05D006328 1.8e-24 116.7 192 42.7
unitig_61.g26388 Utricularia gibba HOM05D005367 ORTHO05D006328 4.1e-24 115.5 157 40.8
Sc01g0003360 Simmondsia chinensis HOM05D005367 ORTHO05D006328 1.6e-23 113.6 171 40.4
EL10Ac1g00429 Beta vulgaris HOM05D005367 ORTHO05D006328 2.0e-23 113.2 153 42.5
Lsat_1_v5_gn_4_36280 Lactuca sativa HOM05D005367 ORTHO05D006328 2.0e-23 113.2 175 39.4
HanXRQChr16g0522831 Helianthus annuus HOM05D005367 ORTHO05D006328 2.7e-23 112.8 167 40.1
Sed0017642 Sechium edule HOM05D005367 ORTHO05D006328 2.7e-23 112.8 152 44.1
arahy.Tifrunner.gnm1.ann1.D8DQXR Arachis hypogaea HOM05D005367 ORTHO05D006328 4.5e-23 112.1 154 42.2
arahy.Tifrunner.gnm1.ann1.G5US7K Arachis hypogaea HOM05D005367 ORTHO05D006328 1.7e-22 110.2 154 41.6
Medtr7g077380 Medicago truncatula HOM05D005367 ORTHO05D006328 2.9e-22 109.4 149 40.9
Nn6g33454 Nelumbo nucifera HOM05D005367 ORTHO05D006328 2.9e-22 109.4 191 38.2
Psat3g109400 Pisum sativum HOM05D005367 ORTHO05D006328 2.9e-22 109.4 145 42.1
Hund16930 Selenicereus undatus HOM05D005367 ORTHO05D006328 6.6e-22 108.2 227 33.5
Ciclev10006075m.g Citrus clementina HOM05D005367 ORTHO05D006328 1.1e-21 107.5 152 38.2
TPR.G37815 Trifolium pratense HOM05D005367 ORTHO05D006328 1.5e-21 107.1 175 39.4
Atru.chr1.441 Acer truncatum HOM05D005367 ORTHO05D006328 1.9e-21 106.7 173 41.6
QL09p013904 Quercus lobata HOM05D005367 ORTHO05D006328 3.3e-21 105.9 199 39.2
Manes.06G148200 Manihot esculenta HOM05D005367 ORTHO05D006328 5.6e-21 105.1 193 38.3
PSO478G0766 Papaver somniferum HOM05D005367 ORTHO05D006328 5.6e-21 105.1 201 37.3
Sp1g00570 Schrenkiella parvula HOM05D005367 ORTHO05D006328 5.6e-21 105.1 179 35.2
Carub.0001s0048 Capsella rubella HOM05D005367 ORTHO05D006328 7.3e-21 104.8 177 37.3
PSO782G1827 Papaver somniferum HOM05D005367 ORTHO05D006328 7.3e-21 104.8 198 36.9
RcHm_v2.0_Chr1g0377581 Rosa chinensis HOM05D005367 ORTHO05D006328 7.3e-21 104.8 194 38.1
Thhalv10008538m.g Eutrema salsugineum HOM05D005367 ORTHO05D006328 9.5e-21 104.4 174 36.8
ECA234G3275 Erigeron canadensis HOM05D005367 ORTHO05D006328 1.2e-20 104.0 143 39.9
Ah.05g180710 Amaranthus hybridus HOM05D005367 ORTHO05D006328 1.6e-20 103.6 172 39.5
AL1G10610 Arabidopsis lyrata HOM05D005367 ORTHO05D006328 2.1e-20 103.2 172 38.4
Duzib205G1257 Durio zibethinus HOM05D005367 ORTHO05D006328 4.7e-20 102.1 165 37.6
VMungo1383G2823 Vigna mungo HOM05D005367 ORTHO05D006328 8.0e-20 101.3 148 38.5
C08p53830 Brassica napus HOM05D006991 ORTHO05D009188 1.0e-19 100.9 171 35.7
BolC8t52897H Brassica oleracea HOM05D000368 ORTHO05D000289 1.0e-19 100.9 171 35.7
FAN10G3657 Fragaria x ananassa HOM05D005367 ORTHO05D006328 1.0e-19 100.9 185 36.8
MD01G1202200 Malus domestica HOM05D005367 ORTHO05D006328 1.8e-19 100.1 164 38.4
FAN10G4254 Fragaria x ananassa HOM05D005367 ORTHO05D006328 2.3e-19 99.8 189 36.0
COL.COLO4_14330 Corchorus olitorius HOM05D005367 ORTHO05D006328 5.2e-19 98.6 189 32.8
Atru.chr1.440 Acer truncatum HOM05D005367 ORTHO05D006328 6.8e-19 98.2 185 38.9
AUR62004342 Chenopodium quinoa HOM05D005367 ORTHO05D006328 8.9e-19 97.8 136 42.6
AT1G01730 Arabidopsis thaliana HOM05D005367 ORTHO05D006328 1.2e-18 97.4 174 37.9
BraA09t42260Z Brassica rapa HOM05D005367 ORTHO05D006328 1.5e-18 97.1 173 35.3
DCAR_010300 Daucus carota HOM05D005367 ORTHO05D006328 9.8e-18 94.4 169 35.5
Sabra14G0059900 Salix brachista HOM05D005367 ORTHO05D006328 9.8e-18 94.4 211 32.2
FvH4_7g29600 Fragaria vesca HOM05D005367 ORTHO05D006328 1.7e-17 93.6 188 35.1
Aqoxy7G00339 Aquilegia oxysepala HOM05D005367 ORTHO05D006328 1.1e-16 90.9 149 38.3
vmacro06668 Vaccinium macrocarpon HOM05D005367 ORTHO05D006328 3.2e-16 89.4 191 34.0
MD01G1056800 Malus domestica HOM05D005367 ORTHO05D006328 1.3e-14 84.0 82 51.2
DCAR_000242 Daucus carota HOM05D005367 ORTHO05D006328 5.0e-14 82.0 109 42.2
Actinidia34119 Actinidia chinensis HOM05D005367 ORTHO05D006328 1.9e-13 80.1 164 34.8
HPP92_022052 Vanilla planifolia HOM05D005367 ORTHO05D006328 7.3e-13 78.2 156 32.7
HPP92_027620 Vanilla planifolia HOM05D005367 ORTHO05D006328 7.3e-13 78.2 156 32.7
FAN03G1577 Fragaria x ananassa HOM05D005367 ORTHO05D006328 1.6e-12 77.0 135 35.6
Potri.015G145000 Populus trichocarpa HOM05D005367 ORTHO05D006328 3.6e-12 75.9 134 35.1
Rhsim03G0187100 Rhododendron simsii HOM05D005367 ORTHO05D006328 8.0e-12 74.7 206 30.1
MBI17_g24635_MAGBIO Magnolia biondii HOM05D005367 ORTHO05D006328 1.5e-10 70.5 201 27.4
FAN06G3705 Fragaria x ananassa HOM05D005367 ORTHO05D006328 1.3e-09 67.4 169 29.6
FAN06G4288 Fragaria x ananassa HOM05D005367 ORTHO05D006328 1.3e-09 67.4 169 29.6
Dinv35219 Davidia involucrata HOM05D005367 ORTHO05D006328 3.7e-09 65.9 176 29.5
Aa31LG1G11100 Aethionema arabicum HOM05D005367 ORTHO05D006328 6.4e-09 65.1 69 49.3
AUR62022549 Chenopodium quinoa HOM05D005367 ORTHO05D006328 1.1e-08 64.3 65 53.8
Prupe.2G295600 Prunus persica HOM05D005367 ORTHO05D006328 2.4e-08 63.2 114 35.1
AUR62022543 Chenopodium quinoa HOM05D000713 ORTHO05D000547 4.6e-07 58.9 84 42.9
Sabra02G0126000 Salix brachista HOM05D005367 ORTHO05D006328 2.3e-06 56.6 48 54.2
Aa31LG1G11110 Aethionema arabicum HOM05D005367 ORTHO05D006328 8.6e-06 54.7 94 35.1


User provided reference genes

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