Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0354641 Rosa chinensis HOM05D007870 ORTHO05D010015 2.4e-24 115.2 80 100.0
FAN06G1295 Fragaria x ananassa HOM05D007870 ORTHO05D010015 1.6e-20 102.4 80 91.2
FvH4_7g13990 Fragaria vesca HOM05D007870 ORTHO05D010015 7.9e-20 100.1 80 85.0
FAN03G1806 Fragaria x ananassa HOM05D007870 ORTHO05D010015 4.4e-18 94.4 80 87.5
Sopen01g038280 Solanum pennellii HOM05D007870 ORTHO05D010015 5.7e-18 94.0 82 68.3
FAN01G0023 Fragaria x ananassa HOM05D007870 ORTHO05D010015 9.7e-18 93.2 80 87.5
FAN06G2504 Fragaria x ananassa HOM05D007870 ORTHO05D010015 9.7e-18 93.2 80 87.5
Zm00001eb190830 Zea mays HOM05D007870 ORTHO05D010015 1.7e-17 92.4 81 80.2
Dinv43804 Davidia involucrata HOM05D007870 ORTHO05D010015 2.2e-17 92.0 80 81.2
unitig_8.g3804 Utricularia gibba HOM05D007870 ORTHO05D010015 2.2e-17 92.0 83 69.9
PGSC0003DMG400000161 Solanum tuberosum HOM05D007870 ORTHO05D010015 2.8e-17 91.7 81 67.9
BolC4t28688H Brassica oleracea HOM05D007870 ORTHO05D010015 4.8e-17 90.9 80 65.0
DCAR_025186 Daucus carota HOM05D007870 ORTHO05D010015 4.8e-17 90.9 83 67.5
CDE11G0999 Ceratophyllum demersum HOM05D007870 ORTHO05D010015 6.3e-17 90.5 83 83.1
Thhalv10001707m.g Eutrema salsugineum HOM05D007870 ORTHO05D010015 1.1e-16 89.7 80 65.0
CDE09G0625 Ceratophyllum demersum HOM05D007870 ORTHO05D010015 1.4e-16 89.4 83 77.1
Os02g0824400 Oryza sativa ssp. japonica HOM05D007870 ORTHO05D010015 1.8e-16 89.0 80 63.8
BcaB02g09002 Brassica carinata HOM05D007870 ORTHO05D010015 3.1e-16 88.2 80 63.8
Carub.0004s2856 Capsella rubella HOM05D007870 ORTHO05D010015 4.1e-16 87.8 80 63.8
Aa31LG10G15580 Aethionema arabicum HOM05D007870 ORTHO05D010015 1.2e-15 86.3 82 63.4
arahy.Tifrunner.gnm1.ann1.LLY2P5 Arachis hypogaea HOM05D007870 ORTHO05D010015 1.2e-15 86.3 80 62.5
QL08p049047 Quercus lobata HOM05D007870 ORTHO05D010015 1.2e-15 86.3 81 64.2
Nn6g33472 Nelumbo nucifera HOM05D007870 ORTHO05D010015 1.6e-15 85.9 82 81.7
Psat4g155360 Pisum sativum HOM05D007870 ORTHO05D010015 1.6e-15 85.9 82 79.3
MD01G1056300 Malus domestica HOM05D007870 ORTHO05D010015 2.6e-15 85.1 81 84.0
arahy.Tifrunner.gnm1.ann1.52J70V Arachis hypogaea HOM05D007870 ORTHO05D010015 3.5e-15 84.7 80 61.2
vmacro13293 Vaccinium macrocarpon HOM05D007870 ORTHO05D010015 7.7e-15 83.6 84 78.6
vmacro23343 Vaccinium macrocarpon HOM05D007870 ORTHO05D010015 7.7e-15 83.6 84 78.6
Cc02_g37830 Coffea canephora HOM05D007870 ORTHO05D010015 1.0e-14 83.2 81 80.2
BolC4t22300H Brassica oleracea HOM05D007870 ORTHO05D010015 2.9e-14 81.6 80 62.5
Phvul.010G097100 Phaseolus vulgaris HOM05D007870 ORTHO05D010015 5.0e-14 80.9 80 60.0
TWI23G0891 Tripterygium wilfordii HOM05D007870 ORTHO05D010015 6.5e-14 80.5 82 76.8
Lalb_Chr10g0097081 Lupinus albus HOM05D007870 ORTHO05D010015 1.1e-13 79.7 83 74.7
Oeu056365.2 Olea europaea HOM05D007870 ORTHO05D010015 5.5e-13 77.4 111 50.5
Thecc.01G360900 Theobroma cacao HOM05D007870 ORTHO05D010015 2.7e-12 75.1 83 72.3
SalBow3G1909 Salvia bowleyana HOM05D007870 ORTHO05D010015 3.6e-12 74.7 83 74.7
HPP92_014735 Vanilla planifolia HOM05D007870 ORTHO05D010015 4.7e-12 74.3 81 58.0
Manes.05G036400 Manihot esculenta HOM05D007870 ORTHO05D010015 2.0e-10 68.9 82 73.2
Rhsim07G0016800 Rhododendron simsii HOM05D007870 ORTHO05D010015 2.0e-10 68.9 137 46.7
Lj3g0023390 Lotus japonicus HOM05D007870 ORTHO05D010015 2.6e-10 68.6 79 72.2
BraA04t18871Z Brassica rapa HOM05D007870 ORTHO05D010015 4.4e-10 67.8 80 53.8
BcaC02g07064 Brassica carinata HOM05D007870 ORTHO05D010015 7.5e-10 67.0 80 55.0
C04p71900 Brassica napus HOM05D007870 ORTHO05D010015 7.5e-10 67.0 80 55.0
Aqoxy7G00343 Aquilegia oxysepala HOM05D007870 ORTHO05D010015 9.7e-10 66.6 83 68.7
ATR0680G221 Amborella trichopoda HOM05D007870 ORTHO05D010015 2.8e-09 65.1 84 67.9
AL4G45070 Arabidopsis lyrata HOM05D007870 ORTHO05D010015 2.8e-09 65.1 80 53.8
C04p06780 Brassica napus HOM05D007870 ORTHO05D010015 2.8e-09 65.1 80 61.2
TAR375G0654 Trochodendron aralioides HOM05D007870 ORTHO05D010015 2.8e-09 65.1 83 69.9
Sp4g27930 Schrenkiella parvula HOM05D007870 ORTHO05D010015 3.7e-09 64.7 80 55.0
A04p34100 Brassica napus HOM05D007870 ORTHO05D010015 4.8e-09 64.3 80 53.8
Peaxi162Scf00056g00013 Petunia axillaris HOM05D007870 ORTHO05D010015 4.8e-09 64.3 82 69.5
Actinidia10023 Actinidia chinensis HOM05D007870 ORTHO05D010015 6.3e-09 63.9 78 71.8
A05p05830 Brassica napus HOM05D007870 ORTHO05D010015 6.3e-09 63.9 80 52.5
SalBow1G0457 Salvia bowleyana HOM05D007870 ORTHO05D010015 8.2e-09 63.5 83 69.9
Sopen07g023130 Solanum pennellii HOM05D007870 ORTHO05D010015 8.2e-09 63.5 85 55.3
SGA_v2.0_scaffold4G02333 Striga asiatica HOM05D007870 ORTHO05D010015 8.2e-09 63.5 83 68.7
MELO3C006117.2 Cucumis melo HOM05D007870 ORTHO05D010015 1.1e-08 63.2 83 51.8
Duzib138G1310 Durio zibethinus HOM05D007870 ORTHO05D010015 1.8e-08 62.4 83 67.5
Medtr8g031040 Medicago truncatula HOM05D007870 ORTHO05D010015 1.8e-08 62.4 83 67.5
BraA05t19548Z Brassica rapa HOM05D007870 ORTHO05D010015 4.1e-08 61.2 80 53.8
BcaC02g12172 Brassica carinata HOM05D007870 ORTHO05D010015 7.0e-08 60.5 80 63.8
TPR.G39935 Trifolium pratense HOM05D007870 ORTHO05D010015 1.2e-07 59.7 82 67.1
Lalb_Chr04g0256851 Lupinus albus HOM05D007870 ORTHO05D010015 1.6e-07 59.3 83 65.1
PGR031G0106 Punica granatum HOM05D007870 ORTHO05D010015 1.7e-06 55.8 82 62.2
MBI18_g40941_MAGBIO Magnolia biondii HOM05D007870 ORTHO05D010015 2.2e-06 55.5 83 65.1
CAN.G78.34 Capsicum annuum HOM05D007870 ORTHO05D010015 5.0e-06 54.3 82 65.9
Gorai.004G158100 Gossypium raimondii HOM05D007870 ORTHO05D010015 6.5e-06 53.9 83 62.7


User provided reference genes

Program Settings