Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0354021 Rosa chinensis HOM05D006991 ORTHO05D009188 2.8e-202 708.4 346 100.0
RcHm_v2.0_Chr1g0354041 Rosa chinensis HOM05D006991 ORTHO05D009188 1.7e-151 539.7 425 68.9
FvH4_7g13830 Fragaria vesca HOM05D006991 ORTHO05D009188 3.5e-149 531.9 421 68.2
FAN03G2057 Fragaria x ananassa HOM05D006991 ORTHO05D009188 1.3e-148 530.0 421 67.7
FAN06G2381 Fragaria x ananassa HOM05D006991 ORTHO05D009188 1.7e-143 513.1 459 62.3
FAN10G0464 Fragaria x ananassa HOM05D006991 ORTHO05D009188 6.5e-143 511.1 448 63.4
Prupe.2G164100 Prunus persica HOM05D006991 ORTHO05D009188 2.7e-141 505.8 427 64.4
FAN06G3007 Fragaria x ananassa HOM05D006991 ORTHO05D009188 9.7e-139 497.3 447 62.4
FAN01G0340 Fragaria x ananassa HOM05D006991 ORTHO05D009188 2.4e-137 492.7 447 62.0
MD01G1054400 Malus domestica HOM05D006991 ORTHO05D009188 2.2e-135 486.1 411 63.7
Potri.002G157400 Populus trichocarpa HOM05D006991 ORTHO05D009188 3.0e-124 449.1 426 57.3
Medtr8g031480 Medicago truncatula HOM05D006991 ORTHO05D009188 4.5e-120 435.3 427 55.0
QL08p049512 Quercus lobata HOM05D006991 ORTHO05D009188 2.2e-119 433.0 427 56.2
Lj3g0006815 Lotus japonicus HOM05D006991 ORTHO05D009188 2.9e-119 432.6 429 55.5
CiPaw.02G028700 Carya illinoinensis HOM05D006991 ORTHO05D009188 3.8e-119 432.2 430 55.3
Lalb_Chr04g0256761 Lupinus albus HOM05D006991 ORTHO05D009188 3.8e-119 432.2 427 54.6
CANSAT56G3382 Cannabis sativa HOM05D006991 ORTHO05D009188 1.1e-118 430.6 427 55.7
Cfa003952 Carpinus fangiana HOM05D006991 ORTHO05D009188 1.1e-118 430.6 423 55.8
TPR.G4402 Trifolium pratense HOM05D006991 ORTHO05D009188 1.4e-118 430.3 427 54.6
Haze_15467 Corylus avellana HOM05D006991 ORTHO05D009188 3.2e-118 429.1 423 55.8
GSVIVG01026850001 Vitis vinifera HOM05D006991 ORTHO05D009188 4.2e-118 428.7 419 57.0
Ciclev10019238m.g Citrus clementina HOM05D006991 ORTHO05D009188 1.4e-116 423.7 427 55.0
Psat4g154080 Pisum sativum HOM05D006991 ORTHO05D009188 1.4e-116 423.7 427 54.1
Glyma.07G073500 Glycine max HOM05D006991 ORTHO05D009188 3.3e-115 419.1 428 53.3
Dinv43786 Davidia involucrata HOM05D006991 ORTHO05D009188 2.2e-114 416.4 415 54.7
Cpa.g.sc18.226 Carica papaya HOM05D006991 ORTHO05D009188 1.1e-113 414.1 427 52.7
TWI23G0867 Tripterygium wilfordii HOM05D006991 ORTHO05D009188 1.8e-113 413.3 417 54.4
EL10Ac1g00536 Beta vulgaris HOM05D006991 ORTHO05D009188 9.1e-113 411.0 372 57.8
AUR62004323 Chenopodium quinoa HOM05D006991 ORTHO05D009188 2.6e-112 409.5 429 52.9
Thecc.01G363100 Theobroma cacao HOM05D006991 ORTHO05D009188 2.9e-111 406.0 428 54.0
VMungo0331G1855 Vigna mungo HOM05D006991 ORTHO05D009188 3.8e-111 405.6 412 53.6
COL.COLO4_12678 Corchorus olitorius HOM05D006991 ORTHO05D009188 4.2e-110 402.1 414 53.6
Duzib138G0243 Durio zibethinus HOM05D006991 ORTHO05D009188 4.2e-110 402.1 429 53.1
Aa31LG1G11140 Aethionema arabicum HOM05D006991 ORTHO05D009188 1.0e-108 397.5 418 52.4
DCAR_015941 Daucus carota HOM05D006991 ORTHO05D009188 5.2e-108 395.2 416 51.4
Ah.05g176510 Amaranthus hybridus HOM05D006991 ORTHO05D009188 5.7e-107 391.7 429 51.3
Gohir.D07G148700 Gossypium hirsutum HOM05D006991 ORTHO05D009188 9.7e-107 391.0 419 52.5
Nn6g33525 Nelumbo nucifera HOM05D006991 ORTHO05D009188 9.7e-107 391.0 414 51.4
BolC8t52898H Brassica oleracea HOM05D006991 ORTHO05D009188 1.7e-106 390.2 416 51.7
Eucgr.E00177 Eucalyptus grandis HOM05D006991 ORTHO05D009188 2.8e-106 389.4 408 53.7
Thhalv10007047m.g Eutrema salsugineum HOM05D006991 ORTHO05D009188 2.8e-106 389.4 416 52.4
Gorai.001G170100 Gossypium raimondii HOM05D006991 ORTHO05D009188 6.3e-106 388.3 419 52.3
AT1G01770 Arabidopsis thaliana HOM05D006991 ORTHO05D009188 1.8e-105 386.7 419 51.8
Hund27298 Selenicereus undatus HOM05D006991 ORTHO05D002850 1.8e-105 386.7 417 53.0
Sp1g00530 Schrenkiella parvula HOM05D006991 ORTHO05D009188 1.2e-104 384.0 416 51.4
MSTRG.28216 Avicennia marina HOM05D006991 ORTHO05D009188 2.0e-104 383.3 420 50.0
Carub.0001s0044 Capsella rubella HOM05D006991 ORTHO05D009188 2.7e-104 382.9 420 51.9
ATR0680G083 Amborella trichopoda HOM05D006991 ORTHO05D009188 3.5e-104 382.5 427 49.2
HanXRQChr04g0121651 Helianthus annuus HOM05D006991 ORTHO05D009188 3.5e-104 382.5 414 50.2
AL1G10570 Arabidopsis lyrata HOM05D006991 ORTHO05D009188 4.5e-104 382.1 419 51.1
Aqoxy5G03423_Aqoxy5G03424 Aquilegia oxysepala HOM05D006991 ORTHO05D009188 1.0e-103 380.9 424 50.5
Sc26g0001000 Simmondsia chinensis HOM05D006991 ORTHO05D009188 1.3e-103 380.6 407 50.6
ClCG05G001680 Citrullus lanatus HOM05D006991 ORTHO05D009188 1.7e-103 380.2 404 52.0
THA.LOC104801448 Tarenaya hassleriana HOM05D006991 ORTHO05D009188 2.9e-103 379.4 420 49.5
C08p53830 Brassica napus HOM05D006991 ORTHO05D009188 3.8e-103 379.0 410 51.2
MELO3C006127.2 Cucumis melo HOM05D006991 ORTHO05D009188 3.8e-103 379.0 412 50.5
Lsat_1_v5_gn_7_5201 Lactuca sativa HOM05D006991 ORTHO05D009188 3.8e-103 379.0 411 51.3
CARHR000550 Cardamine hirsuta HOM05D006991 ORTHO05D009188 6.5e-103 378.3 380 54.2
Nitab4.5_0002160g0070 Nicotiana tabacum HOM05D006991 ORTHO05D009188 8.5e-103 377.9 414 51.2
CAN.G78.50 Capsicum annuum HOM05D006991 ORTHO05D009188 1.1e-102 377.5 414 51.2
PGSC0003DMG400000156 Solanum tuberosum HOM05D006991 ORTHO05D009188 1.9e-102 376.7 412 51.5
PGR042G0621 Punica granatum HOM05D006991 ORTHO05D009188 2.5e-102 376.3 419 50.6
Cc02_g37710 Coffea canephora HOM05D006991 ORTHO05D009188 2.1e-101 373.2 411 50.4
CSS0011179 Camellia sinensis var. sinensis HOM05D006991 ORTHO05D009188 3.6e-101 372.5 413 49.9
Atru.chr5.484 Acer truncatum HOM05D006991 ORTHO05D009188 4.7e-101 372.1 387 53.2
Nitab4.5_0009210g0040 Nicotiana tabacum HOM05D006991 ORTHO05D009188 4.7e-101 372.1 414 50.5
Lj9A581T68 Lonicera japonica HOM05D006991 ORTHO05D009188 8.0e-101 371.3 414 50.7
Sed0028010 Sechium edule HOM05D006991 ORTHO05D009188 8.0e-101 371.3 412 51.0
CsaV3_3G009060 Cucumis sativus L. HOM05D006991 ORTHO05D009188 1.0e-100 370.9 402 51.2
BraA09t42261Z Brassica rapa HOM05D006991 ORTHO05D009188 3.0e-100 369.4 410 50.0
Peaxi162Scf00020g00011 Petunia axillaris HOM05D006991 ORTHO05D009188 4.0e-100 369.0 437 48.7
Actinidia10005 Actinidia chinensis HOM05D006991 ORTHO05D009188 8.8e-100 367.9 419 48.9
Sopen01g038120 Solanum pennellii HOM05D006991 ORTHO05D009188 3.4e-99 365.9 412 50.5
CSS0000914 Camellia sinensis var. sinensis HOM05D006991 ORTHO05D009188 9.8e-99 364.4 406 48.8
Migut.N01431 Erythranthe guttata HOM05D006991 ORTHO05D009188 9.8e-99 364.4 414 49.0
CDE05G1529 Ceratophyllum demersum HOM05D006991 ORTHO05D009188 1.3e-98 364.0 426 48.1
Gohir.A07G142900 Gossypium hirsutum HOM05D006991 ORTHO05D009188 2.8e-98 362.8 407 51.1
PSO063G6634 Papaver somniferum HOM05D006991 ORTHO05D009188 8.3e-98 361.3 416 49.8
Rhsim07G0017800 Rhododendron simsii HOM05D006991 ORTHO05D009188 1.1e-97 360.9 406 51.2
SGA_v2.0_scaffold43G16441 Striga asiatica HOM05D006991 ORTHO05D009188 4.1e-97 359.0 414 47.6
Ca_23659_v3 Cicer arietinum L. HOM05D006991 ORTHO05D009188 2.7e-96 356.3 607 38.2
Os07g0457300 Oryza sativa ssp. japonica HOM05D006991 ORTHO05D009188 3.5e-96 355.9 416 45.7
Zm00001eb306550 Zea mays HOM05D006991 ORTHO05D009188 1.7e-95 353.6 420 46.7
ECA236G3544 Erigeron canadensis HOM05D006991 ORTHO05D009188 2.3e-95 353.2 403 49.6
SalBow5G3488 Salvia bowleyana HOM05D006991 ORTHO05D009188 3.8e-95 352.4 413 47.7
SalBow5G3803 Salvia bowleyana HOM05D006991 ORTHO05D009188 3.8e-95 352.4 413 47.7
Solyc01g094330.3 Solanum lycopersicum HOM05D006991 ORTHO05D009188 1.1e-94 350.9 440 46.8
Hma1.2p1_0001F.1_g001590 Hydrangea macrophylla HOM05D006991 ORTHO05D009188 5.5e-94 348.6 385 50.6
Phvul.010G096000 Phaseolus vulgaris HOM05D006991 ORTHO05D009188 5.5e-94 348.6 362 52.5
vmacro13305 Vaccinium macrocarpon HOM05D006991 ORTHO05D009188 2.1e-93 346.7 466 44.2
unitig_748.g7107 Utricularia gibba HOM05D006991 ORTHO05D009188 4.7e-93 345.5 396 48.7
HPP92_004979 Vanilla planifolia HOM05D006991 ORTHO05D009188 4.0e-92 342.4 396 46.7
arahy.Tifrunner.gnm1.ann1.NT7Z8Q Arachis hypogaea HOM05D006991 ORTHO05D009188 4.4e-91 339.0 362 51.9
Manes.01G259800 Manihot esculenta HOM05D006991 ORTHO05D009188 6.4e-82 308.5 331 52.3
arahy.Tifrunner.gnm1.ann1.JH251T Arachis hypogaea HOM05D006991 ORTHO05D009188 1.9e-81 307.0 345 51.0
TAR375G0043 Trochodendron aralioides HOM05D006991 ORTHO05D009188 1.7e-79 300.4 332 50.6
Pp3c9_2540 Physcomitrium patens HOM05D006991 ORTHO05D009188 5.6e-78 295.4 406 42.1
Hma1.2p1_0001F.1_g001600 Hydrangea macrophylla HOM05D006991 ORTHO05D009188 4.3e-70 269.2 276 52.9
SMO164G0214 Selaginella moellendorffii HOM05D006991 ORTHO05D009188 3.1e-68 263.1 395 39.7
MBI18_g09765_MAGBIO Magnolia biondii HOM05D006991 ORTHO05D009188 6.6e-55 218.8 284 45.1
Sabra02G0125100 Salix brachista HOM05D006991 ORTHO05D009188 5.8e-51 205.7 170 62.4
EL10Ac1g02136 Beta vulgaris HOM05D006991 ORTHO05D009188 1.0e-47 194.9 228 49.1
AagrBONN_evm.TU.Sc2ySwM_344.4948 Anthoceros agrestis HOM05D006991 ORTHO05D009188 3.4e-43 179.9 239 42.3
QL09p021383 Quercus lobata HOM05D006991 ORTHO05D009188 1.8e-39 167.5 108 75.0
EL10Ac3g06779 Beta vulgaris HOM05D006991 ORTHO05D009188 2.5e-38 163.7 177 47.5
HanXRQChr01g0021681 Helianthus annuus HOM05D006991 ORTHO05D009188 2.4e-36 157.1 190 46.3
AUR62003727 Chenopodium quinoa HOM05D001417 ORTHO05D001496 4.2e-33 146.4 176 47.7
EL10Ac5g11247 Beta vulgaris HOM05D006991 ORTHO05D009188 1.5e-27 127.9 142 49.3
AUR62036784 Chenopodium quinoa HOM05D006991 ORTHO05D138340 3.4e-19 100.1 80 62.5
CAN.G226.8 Capsicum annuum HOM05D006991 ORTHO05D000001 2.5e-17 94.0 61 67.2
HanXRQChr01g0025441 Helianthus annuus HOM05D006991 ORTHO05D009188 2.2e-10 70.9 79 49.4
HanXRQChr03g0092981 Helianthus annuus HOM05D006991 ORTHO05D226355 1.1e-09 68.6 46 65.2


User provided reference genes

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