Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0353921 Rosa chinensis HOM05D004054 ORTHO05D004945 0.0e+00 1611.3 850 100.0
RcHm_v2.0_Chr4g0440641 Rosa chinensis HOM05D004054 ORTHO05D004945 0.0e+00 1542.7 854 96.6
RcHm_v2.0_Chr1g0331881 Rosa chinensis HOM05D004054 ORTHO05D004945 0.0e+00 1530.4 851 96.1
FAN12G3951 Fragaria x ananassa HOM05D004054 ORTHO05D004945 0.0e+00 1451.8 852 91.4
FvH4_4g31960 Fragaria vesca HOM05D004054 ORTHO05D004945 0.0e+00 1449.5 852 91.1
FAN17G1509 Fragaria x ananassa HOM05D004054 ORTHO05D004945 0.0e+00 1441.8 852 91.1
FAN07G1439 Fragaria x ananassa HOM05D004054 ORTHO05D004945 0.0e+00 1434.9 863 89.9
FAN22G1878 Fragaria x ananassa HOM05D004054 ORTHO05D004945 0.0e+00 1432.5 861 90.2
Prupe.1G267800 Prunus persica HOM05D004054 ORTHO05D004945 0.0e+00 1241.9 859 79.0
MD13G1079000 Malus domestica HOM05D004054 ORTHO05D004945 0.0e+00 1241.1 863 77.6
MD16G1078700 Malus domestica HOM05D004054 ORTHO05D004945 0.0e+00 1152.9 765 80.3
QL03p065666 Quercus lobata HOM05D004054 ORTHO05D004945 0.0e+00 1110.1 853 69.9
Cfa009037 Carpinus fangiana HOM05D004054 ORTHO05D004945 0.0e+00 1106.7 853 71.6
Haze_12066 Corylus avellana HOM05D004054 ORTHO05D004945 7.5e-310 1067.0 955 64.0
Ciclev10030693m.g Citrus clementina HOM05D004054 ORTHO05D004945 5.6e-305 1050.8 867 66.3
Thecc.02G355300 Theobroma cacao HOM05D004054 ORTHO05D004945 2.8e-304 1048.5 853 66.6
TAR362G0462 Trochodendron aralioides HOM05D004054 ORTHO05D004945 6.8e-303 1043.9 861 66.8
Duzib268G1532 Durio zibethinus HOM05D004054 ORTHO05D004945 1.0e-298 1030.0 856 64.8
COL.COLO4_07923 Corchorus olitorius HOM05D004054 ORTHO05D004945 2.0e-294 1015.8 861 65.6
Gohir.A13G052300 Gossypium hirsutum HOM05D004054 ORTHO05D004945 2.7e-291 1005.4 856 63.1
Gorai.013G077900 Gossypium raimondii HOM05D004054 ORTHO05D004945 3.5e-291 1005.0 856 63.1
GSVIVG01036940001 Vitis vinifera HOM05D004054 ORTHO05D004945 1.0e-290 1003.4 864 64.5
Actinidia05393 Actinidia chinensis HOM05D004054 ORTHO05D004945 1.1e-289 1000.0 838 64.9
Gohir.D13G068400 Gossypium hirsutum HOM05D004054 ORTHO05D004945 1.6e-288 996.1 856 62.9
Rhsim01G0215700 Rhododendron simsii HOM05D004054 ORTHO05D004945 2.8e-288 995.3 836 65.2
Potri.010G033900 Populus trichocarpa HOM05D004054 ORTHO05D004945 2.3e-287 992.3 833 67.1
CsaV3_5G032370 Cucumis sativus L. HOM05D004054 ORTHO05D004945 2.0e-286 989.2 868 64.1
TWI36G0714 Tripterygium wilfordii HOM05D004054 ORTHO05D004945 2.0e-286 989.2 860 63.6
ClCG05G024580 Citrullus lanatus HOM05D004054 ORTHO05D004945 1.4e-284 983.0 887 63.0
Atru.chr11.1851 Acer truncatum HOM05D004054 ORTHO05D004945 3.5e-283 978.4 872 63.4
Glyma.18G126000 Glycine max HOM05D004054 ORTHO05D004945 4.0e-279 964.9 836 64.7
Ca_22853_v3 Cicer arietinum L. HOM05D004054 ORTHO05D004945 6.8e-279 964.1 841 62.5
GSVIVG01020074001 Vitis vinifera HOM05D004054 ORTHO05D004945 2.6e-278 962.2 864 62.7
Glyma.08G296300 Glycine max HOM05D004054 ORTHO05D004945 3.4e-278 961.8 868 62.7
Duzib248G1634 Durio zibethinus HOM05D004054 ORTHO05D004945 2.4e-276 955.7 852 62.2
Sed0026408 Sechium edule HOM05D004054 ORTHO05D004945 7.8e-275 950.7 861 61.3
arahy.Tifrunner.gnm1.ann1.K6PP8H Arachis hypogaea HOM05D004054 ORTHO05D004945 3.9e-274 948.3 862 62.2
VMungo0251G1664 Vigna mungo HOM05D004054 ORTHO05D004945 5.1e-274 948.0 835 62.6
Lj4g0012636 Lotus japonicus HOM05D004054 ORTHO05D004945 1.1e-273 946.8 840 62.7
Sabra10G0030700 Salix brachista HOM05D004054 ORTHO05D004945 3.3e-273 945.3 891 62.0
MELO3C012068.2 Cucumis melo HOM05D004054 ORTHO05D004945 1.2e-270 936.8 855 62.1
Phvul.003G069800 Phaseolus vulgaris HOM05D004054 ORTHO05D004945 4.4e-270 934.9 874 60.2
MBI17_g39912_MAGBIO Magnolia biondii HOM05D004054 ORTHO05D004945 5.8e-270 934.5 874 59.2
MBI11_g00106_MAGBIO Magnolia biondii HOM05D004054 ORTHO05D004945 1.3e-269 933.3 882 58.3
Gorai.008G182900 Gossypium raimondii HOM05D004054 ORTHO05D004945 1.2e-267 926.8 868 59.2
Manes.05G096500 Manihot esculenta HOM05D004054 ORTHO05D004945 3.5e-267 925.2 744 69.2
CSS0048330 Camellia sinensis var. sinensis HOM05D004054 ORTHO05D004945 7.9e-267 924.1 818 62.1
Gohir.D12G170300 Gossypium hirsutum HOM05D004054 ORTHO05D004945 1.7e-266 922.9 844 60.2
Medtr8g469270 Medicago truncatula HOM05D004054 ORTHO05D004945 9.6e-265 917.1 871 59.6
Aqoxy5G00175 Aquilegia oxysepala HOM05D004054 ORTHO05D004945 1.3e-264 916.8 841 61.4
TPR.G33257 Trifolium pratense HOM05D004054 ORTHO05D004945 2.1e-264 916.0 839 60.7
Psat4g132120 Pisum sativum HOM05D004054 ORTHO05D004945 8.1e-264 914.1 869 60.2
PSO832G3945 Papaver somniferum HOM05D004054 ORTHO05D004945 1.1e-263 913.7 839 60.5
Lalb_Chr16g0392581 Lupinus albus HOM05D004054 ORTHO05D004945 5.3e-263 911.4 840 60.7
Thhalv10020058m.g Eutrema salsugineum HOM05D004054 ORTHO05D004945 6.9e-263 911.0 832 61.4
Carub.0003s1763 Capsella rubella HOM05D004054 ORTHO05D004945 5.8e-262 907.9 859 58.9
Sp3g16020 Schrenkiella parvula HOM05D004054 ORTHO05D004945 1.1e-260 903.7 868 59.6
Eucgr.B03410 Eucalyptus grandis HOM05D004054 ORTHO05D004945 1.9e-260 902.9 835 60.4
AL3G31070 Arabidopsis lyrata HOM05D004054 ORTHO05D004945 9.3e-260 900.6 869 58.8
vmacro07429 Vaccinium macrocarpon HOM05D004054 ORTHO05D004945 1.2e-259 900.2 903 57.8
Hma1.2p1_1545F.1_g289900 Hydrangea macrophylla HOM05D004054 ORTHO05D004945 1.6e-259 899.8 754 65.6
Peaxi162Scf00209g00326 Petunia axillaris HOM05D004054 ORTHO05D004945 1.3e-258 896.7 895 57.0
Sc11g0001680 Simmondsia chinensis HOM05D004054 ORTHO05D004945 3.0e-258 895.6 854 59.4
AT3G17900 Arabidopsis thaliana HOM05D004054 ORTHO05D004945 5.1e-258 894.8 871 58.1
Dinv24955 Davidia involucrata HOM05D004054 ORTHO05D004945 1.1e-257 893.6 721 67.5
CARHR093230 Cardamine hirsuta HOM05D004054 ORTHO05D004945 2.8e-256 889.0 860 58.4
Sopen05g002990 Solanum pennellii HOM05D004054 ORTHO05D004945 3.1e-255 885.6 866 58.2
PSO764G0096 Papaver somniferum HOM05D004054 ORTHO05D004945 5.3e-255 884.8 837 59.0
PGR102G2139 Punica granatum HOM05D004054 ORTHO05D004945 5.3e-255 884.8 866 59.4
Lsat_1_v5_gn_8_54080 Lactuca sativa HOM05D004054 ORTHO05D004945 8.4e-253 877.5 888 56.6
Nitab4.5_0009649g0020 Nicotiana tabacum HOM05D004054 ORTHO05D004945 5.5e-252 874.8 844 58.8
Aa31LG8G4770 Aethionema arabicum HOM05D004054 ORTHO05D004945 6.7e-250 867.8 923 55.7
Cc11_g13490 Coffea canephora HOM05D004054 ORTHO05D004945 1.1e-249 867.1 835 58.4
THA.LOC104820344 Tarenaya hassleriana HOM05D004054 ORTHO05D004945 5.7e-249 864.8 875 57.0
Migut.L01344 Erythranthe guttata HOM05D004054 ORTHO05D004945 2.6e-246 855.9 835 60.2
Oeu011693.1 Olea europaea HOM05D004054 ORTHO05D004945 1.7e-245 853.2 767 61.4
DCAR_027382 Daucus carota HOM05D004054 ORTHO05D004945 3.8e-245 852.0 842 57.1
Nitab4.5_0008717g0030 Nicotiana tabacum HOM05D004054 ORTHO05D004945 1.1e-244 850.5 845 57.6
Glyma.02G021900 Glycine max HOM05D004054 ORTHO05D004945 5.5e-244 848.2 858 56.6
MSTRG.671 Avicennia marina HOM05D004054 ORTHO05D004945 2.7e-243 845.9 856 57.1
C03p49280 Brassica napus HOM05D004054 ORTHO05D004945 6.1e-243 844.7 865 57.9
BolC1t04586H Brassica oleracea HOM05D004054 ORTHO05D004945 6.1e-243 844.7 822 59.1
BraA03t13202Z Brassica rapa HOM05D004054 ORTHO05D004945 3.0e-242 842.4 834 59.0
C01p46250 Brassica napus HOM05D004054 ORTHO05D004945 5.1e-242 841.6 822 59.0
BcaC09g48754 Brassica carinata HOM05D004054 ORTHO05D004945 8.7e-242 840.9 827 58.6
BcaB04g20809 Brassica carinata HOM05D004054 ORTHO05D004945 7.4e-241 837.8 862 55.9
A01p36490 Brassica napus HOM05D004054 ORTHO05D004945 2.4e-239 832.8 865 56.3
BolC3t17216H Brassica oleracea HOM05D004054 ORTHO05D004945 3.1e-239 832.4 830 59.0
Lalb_Chr09g0335271 Lupinus albus HOM05D004054 ORTHO05D004945 1.9e-236 823.2 790 59.2
Psat2g124400 Pisum sativum HOM05D004054 ORTHO05D004945 1.9e-236 823.2 856 55.0
HanXRQChr12g0369801 Helianthus annuus HOM05D004054 ORTHO05D004945 3.6e-235 818.9 872 56.1
AUR62026447 Chenopodium quinoa HOM05D004054 ORTHO05D004945 4.6e-235 818.5 833 57.3
BraA01t03713Z Brassica rapa HOM05D004054 ORTHO05D004945 1.4e-234 817.0 865 56.2
SalBow2G0733 Salvia bowleyana HOM05D004054 ORTHO05D004945 3.0e-234 815.8 951 51.9
SGA_v2.0_scaffold302G47866 Striga asiatica HOM05D004054 ORTHO05D004945 5.1e-234 815.1 865 55.3
BcaB04g18970 Brassica carinata HOM05D004054 ORTHO05D004945 2.5e-233 812.8 825 58.3
ECA247G4086 Erigeron canadensis HOM05D004054 ORTHO05D004945 9.7e-233 810.8 863 54.3
Hund25271 Selenicereus undatus HOM05D004054 ORTHO05D004945 5.3e-231 805.1 840 55.1
Nn3g19739 Nelumbo nucifera HOM05D004054 ORTHO05D004945 2.9e-229 799.3 727 61.3
Ca_04741_v3 Cicer arietinum L. HOM05D004054 ORTHO05D004945 3.8e-229 798.9 817 56.7
AUR62026254 Chenopodium quinoa HOM05D004054 ORTHO05D004945 8.5e-229 797.7 838 56.0
Oeu028539.1 Olea europaea HOM05D004054 ORTHO05D004945 2.5e-228 796.2 873 54.1
SalBow2G2854 Salvia bowleyana HOM05D004054 ORTHO05D004945 5.7e-225 785.0 853 53.8
Medtr5g038440 Medicago truncatula HOM05D004054 ORTHO05D004945 9.1e-223 777.7 832 54.0
BcaC01g03722 Brassica carinata HOM05D004054 ORTHO05D004945 3.2e-220 769.2 829 56.6
Lalb_Chr17g0340361 Lupinus albus HOM05D004054 ORTHO05D004945 3.2e-220 769.2 722 58.9
ATR0564G248 Amborella trichopoda HOM05D004054 ORTHO05D004945 1.5e-217 760.4 860 51.4
TPR.G13762 Trifolium pratense HOM05D004054 ORTHO05D004945 4.8e-216 755.4 789 55.6
Lj2g0020807 Lotus japonicus HOM05D004054 ORTHO05D004945 1.8e-215 753.4 744 57.8
A03p40440 Brassica napus HOM05D004054 ORTHO05D004945 6.5e-213 745.0 743 59.5
Hund05913 Selenicereus undatus HOM05D004054 ORTHO05D004945 1.0e-210 737.6 787 57.8
Cpa.g.sc5.276 Carica papaya HOM05D004054 ORTHO05D004945 3.4e-209 732.6 558 73.5
arahy.Tifrunner.gnm1.ann1.S53SYG Arachis hypogaea HOM05D004054 ORTHO05D004945 2.4e-207 726.5 819 52.4
CDE09G0195 Ceratophyllum demersum HOM05D004054 ORTHO05D004945 2.4e-207 726.5 865 50.5
HPP92_011033 Vanilla planifolia HOM05D004054 ORTHO05D004945 2.7e-203 713.0 870 50.2
Solyc05g007030.4 Solanum lycopersicum HOM05D004054 ORTHO05D004945 1.0e-202 711.1 611 63.5
EL10Ac6g13147 Beta vulgaris HOM05D004054 ORTHO05D004945 1.7e-197 693.7 848 50.5
arahy.Tifrunner.gnm1.ann1.B2D650 Arachis hypogaea HOM05D004054 ORTHO05D004945 2.9e-192 676.4 823 50.2
Zm00001eb409770 Zea mays HOM05D004054 ORTHO05D004945 2.0e-185 653.7 829 50.1
SEGI_39580 Sequoiadendron giganteum HOM05D004054 ORTHO05D004945 3.7e-184 649.4 826 47.8
Gohir.A12G166800 Gossypium hirsutum HOM05D004054 ORTHO05D004945 4.9e-184 649.0 556 64.2
VMungo1215G1372 Vigna mungo HOM05D004054 ORTHO05D004945 3.4e-177 626.3 1088 39.6
Nn1g02896 Nelumbo nucifera HOM05D004054 ORTHO05D004945 2.4e-175 620.2 851 45.9
CiPaw.06G080700 Carya illinoinensis HOM05D004054 ORTHO05D004945 7.3e-172 608.6 452 73.2
Phvul.002G066700 Phaseolus vulgaris HOM05D004054 ORTHO05D004945 4.2e-159 566.2 539 58.1
Lsat_1_v5_gn_4_9281 Lactuca sativa HOM05D004054 ORTHO05D004945 1.9e-156 557.4 818 43.8
CDE02G2379 Ceratophyllum demersum HOM05D004054 ORTHO05D004945 7.3e-156 555.4 736 45.9
ECA234G1496 Erigeron canadensis HOM05D004054 ORTHO05D004945 2.4e-154 550.4 835 43.5
unitig_22.g6528 Utricularia gibba HOM05D004054 ORTHO05D004945 1.3e-152 544.7 880 43.2
Ah.03g132020 Amaranthus hybridus HOM05D004054 ORTHO05D004945 2.4e-146 523.9 552 54.3
HanXRQChr03g0092771 Helianthus annuus HOM05D004054 ORTHO05D004945 1.5e-145 521.2 765 43.9
Zm00001eb066230 Zea mays HOM05D004054 ORTHO05D004945 5.9e-129 466.1 617 49.1
Mapoly0224s0002 Marchantia polymorpha HOM05D004054 ORTHO05D004945 2.2e-128 464.2 858 37.3
unitig_8.g3947 Utricularia gibba HOM05D004054 ORTHO05D004945 3.2e-119 433.7 543 48.1
CiPaw.06G080600 Carya illinoinensis HOM05D004054 ORTHO05D004945 3.4e-113 413.7 349 65.9
Pp3c16_680 Physcomitrium patens HOM05D004054 ORTHO05D004945 7.2e-111 406.0 798 36.1
SMO119G0368 Selaginella moellendorffii HOM05D004054 ORTHO05D004945 2.5e-95 354.4 643 34.8
Psat0s2845g0120 Pisum sativum HOM05D004054 ORTHO05D004945 2.2e-91 341.3 440 49.3
AagrBONN_evm.TU.Sc2ySwM_228.4114 Anthoceros agrestis HOM05D004054 ORTHO05D004945 2.8e-91 340.9 714 33.6
Potri.008G194566 Populus trichocarpa HOM05D004054 ORTHO05D004945 1.9e-87 328.2 254 68.9
Cpa.g.sc5.277 Carica papaya HOM05D004054 ORTHO05D004945 4.7e-86 323.6 312 57.1
Phvul.002G066500 Phaseolus vulgaris HOM05D004054 ORTHO05D004945 2.7e-65 254.6 283 55.5
RcHm_v2.0_Chr1g0331861 Rosa chinensis HOM05D004054 ORTHO05D004945 2.8e-62 244.6 138 93.5
Gohir.A12G166900 Gossypium hirsutum HOM05D004054 ORTHO05D004945 4.7e-54 217.2 247 50.6
Potri.008G194632 Populus trichocarpa HOM05D004054 ORTHO05D004945 1.5e-52 212.2 195 63.6
MSTRG.2359 Avicennia marina HOM05D004054 ORTHO05D004945 1.2e-36 159.5 170 55.9
C02p33030 Brassica napus HOM05D004054 ORTHO05D004945 5.4e-34 150.6 395 34.4
C03p36410 Brassica napus HOM05D004054 ORTHO05D004945 5.1e-32 144.1 391 35.3
BolC3t15954H Brassica oleracea HOM05D004054 ORTHO05D004945 5.1e-32 144.1 391 35.3
A05p04500 Brassica napus HOM05D004054 ORTHO05D004945 7.9e-25 120.2 181 43.6
C03p62480 Brassica napus HOM05D004054 ORTHO05D004945 7.9e-25 120.2 181 43.6
CBR_g39858 Chara braunii HOM05D004054 ORTHO05D009492 7.9e-25 120.2 335 29.0
C08p43480 Brassica napus HOM05D004054 ORTHO05D004945 1.3e-19 102.8 132 48.5
CAN.G793.43 Capsicum annuum HOM05D004054 ORTHO05D004945 2.9e-19 101.7 173 45.1
C06p17170 Brassica napus HOM05D004054 ORTHO05D004945 6.0e-17 94.0 174 40.2
A01p41860 Brassica napus HOM05D004054 ORTHO05D004945 2.3e-16 92.0 92 55.4
Lalb_Chr17g0340371 Lupinus albus HOM05D004054 ORTHO05D004945 3.9e-16 91.3 60 78.3
BolC3t18505H Brassica oleracea HOM05D004054 ORTHO05D004945 9.7e-15 86.7 201 37.3
PGSC0003DMG402017622 Solanum tuberosum HOM05D004054 ORTHO05D004945 2.6e-12 78.6 101 44.6
unitig_8.g3946 Utricularia gibba HOM05D004054 ORTHO05D004945 4.5e-12 77.8 116 39.7
BcaC08g44394 Brassica carinata HOM05D004054 ORTHO05D004945 5.5e-10 70.9 209 30.6
Lsat_1_v5_gn_7_73540 Lactuca sativa HOM05D004054 ORTHO05D004945 1.2e-09 69.7 63 55.6
Lsat_1_v5_gn_3_52120 Lactuca sativa HOM05D004054 ORTHO05D004945 1.6e-09 69.3 63 52.4
CBR_g39856 Chara braunii HOM05D000019 ORTHO05D000353 2.1e-09 68.9 220 26.8
C06p10280 Brassica napus HOM05D011797 ORTHO05D012335 3.6e-09 68.2 48 77.1
A06p30220 Brassica napus HOM05D003604 ORTHO05D004110 3.9e-08 64.7 78 51.3
CBR_g39853 Chara braunii HOM05D000019 ORTHO05D000002 8.8e-08 63.5 47 61.7
Dinv34201 Davidia involucrata HOM05D004054 ORTHO05D004945 1.5e-07 62.8 60 56.7
Aqoxy4G02344 Aquilegia oxysepala HOM05D004054 ORTHO05D004945 1.7e-06 59.3 69 50.7


User provided reference genes

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