Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0353281 Rosa chinensis HOM05D005332 ORTHO05D006861 4.4e-144 514.6 263 100.0
RcHm_v2.0_Chr1g0353111 Rosa chinensis HOM05D005332 ORTHO05D006861 3.3e-139 498.4 263 96.2
FvH4_7g13560 Fragaria vesca HOM05D005332 ORTHO05D006861 6.2e-138 494.2 263 95.4
FAN06G0948 Fragaria x ananassa HOM05D005332 ORTHO05D006861 8.1e-138 493.8 263 95.1
FAN06G1647 Fragaria x ananassa HOM05D005332 ORTHO05D006861 1.1e-137 493.4 263 94.7
FAN01G1890 Fragaria x ananassa HOM05D005332 ORTHO05D006861 1.4e-137 493.0 263 95.1
FAN03G0731 Fragaria x ananassa HOM05D005332 ORTHO05D006861 1.5e-136 489.6 263 94.3
FAN10G1762 Fragaria x ananassa HOM05D005332 ORTHO05D006861 1.3e-135 486.5 263 93.9
RcHm_v2.0_Chr0c39g0503341 Rosa chinensis HOM05D005332 ORTHO05D006861 1.4e-134 483.0 265 93.6
RcHm_v2.0_Chr1g0353141 Rosa chinensis HOM05D005332 ORTHO05D006861 4.6e-125 451.4 244 96.3
MD07G1128800 Malus domestica HOM05D005332 ORTHO05D006861 1.1e-123 446.8 261 85.4
Prupe.2G159800 Prunus persica HOM05D005332 ORTHO05D006861 1.4e-121 439.9 260 84.6
RcHm_v2.0_Chr1g0353331 Rosa chinensis HOM05D005332 ORTHO05D006861 5.5e-118 427.9 230 96.5
CANSAT56G3547 Cannabis sativa HOM05D005332 ORTHO05D006861 1.6e-117 426.4 260 81.9
Haze_15198 Corylus avellana HOM05D005332 ORTHO05D006861 1.5e-115 419.9 260 80.4
Manes.01G260300 Manihot esculenta HOM05D005332 ORTHO05D006861 1.6e-114 416.4 261 80.1
Rhsim07G0018900 Rhododendron simsii HOM05D005332 ORTHO05D006861 1.0e-111 407.1 260 77.7
CSS0028869 Camellia sinensis var. sinensis HOM05D005332 ORTHO05D006861 1.3e-111 406.8 260 78.1
vmacro13319 Vaccinium macrocarpon HOM05D005332 ORTHO05D006861 1.3e-111 406.8 260 76.9
CSS0045846 Camellia sinensis var. sinensis HOM05D005332 ORTHO05D006861 3.8e-111 405.2 260 77.7
TWI59G1218 Tripterygium wilfordii HOM05D005332 ORTHO05D006861 5.0e-111 404.8 260 78.5
RcHm_v2.0_Chr1g0353241 Rosa chinensis HOM05D005332 ORTHO05D006861 1.4e-110 403.3 241 88.4
Ciclev10021196m.g Citrus clementina HOM05D005332 ORTHO05D006861 5.5e-110 401.4 259 78.0
QL08p049836 Quercus lobata HOM05D005332 ORTHO05D006861 7.2e-110 401.0 296 70.6
Actinidia09995 Actinidia chinensis HOM05D000602 ORTHO05D002573 9.3e-110 400.6 260 76.5
Sed0022570 Sechium edule HOM05D005332 ORTHO05D006861 9.3e-110 400.6 260 75.4
Eucgr.E00187 Eucalyptus grandis HOM05D005332 ORTHO05D006861 2.7e-109 399.1 261 76.2
GSVIVG01026821001 Vitis vinifera HOM05D005332 ORTHO05D006861 2.7e-109 399.1 259 78.0
Cpa.g.sc704.3 Carica papaya HOM05D005332 ORTHO05D006861 3.6e-109 398.7 262 76.0
Cc02_g37460 Coffea canephora HOM05D005332 ORTHO05D006861 7.9e-109 397.5 261 74.7
Thecc.01G365300 Theobroma cacao HOM05D005332 ORTHO05D006861 7.9e-109 397.5 259 78.0
Glyma.07G075200 Glycine max HOM05D005332 ORTHO05D006861 1.3e-108 396.7 260 75.8
Lalb_Chr04g0256681 Lupinus albus HOM05D005332 ORTHO05D006861 1.3e-108 396.7 258 75.2
Sabra14G0057900 Salix brachista HOM05D005332 ORTHO05D006861 2.3e-108 396.0 261 77.4
TAR374G0257 Trochodendron aralioides HOM05D005332 ORTHO05D006861 2.3e-108 396.0 262 76.3
Potri.014G079700 Populus trichocarpa HOM05D005332 ORTHO05D006861 3.9e-108 395.2 259 77.6
Lsat_1_v5_gn_3_136741 Lactuca sativa HOM05D005332 ORTHO05D006861 1.1e-107 393.7 260 73.1
Lj9A579T30 Lonicera japonica HOM05D005332 ORTHO05D006861 1.5e-107 393.3 258 76.7
Sopen01g037990 Solanum pennellii HOM05D005332 ORTHO05D006861 2.5e-107 392.5 261 73.6
Gohir.D11G091000 Gossypium hirsutum HOM05D005332 ORTHO05D006861 3.3e-107 392.1 259 77.2
arahy.Tifrunner.gnm1.ann1.CH4HI7 Arachis hypogaea HOM05D005332 ORTHO05D006861 5.7e-107 391.3 261 73.9
CAN.G78.17 Capsicum annuum HOM05D005332 ORTHO05D006861 5.7e-107 391.3 261 73.6
Hund27309 Selenicereus undatus HOM05D005332 ORTHO05D006861 7.4e-107 391.0 260 73.1
PGSC0003DMG402000019 Solanum tuberosum HOM05D005332 ORTHO05D006861 7.4e-107 391.0 261 73.6
HPP92_025722 Vanilla planifolia HOM05D005332 ORTHO05D006861 7.4e-107 391.0 261 72.4
Duzib138G1089 Durio zibethinus HOM05D005332 ORTHO05D006861 9.7e-107 390.6 261 75.9
Gorai.007G097000 Gossypium raimondii HOM05D005332 ORTHO05D006861 9.7e-107 390.6 259 76.8
Ah.05g176380 Amaranthus hybridus HOM05D005332 ORTHO05D006861 1.6e-106 389.8 260 73.5
arahy.Tifrunner.gnm1.ann1.W4LYDN Arachis hypogaea HOM05D005332 ORTHO05D006861 1.6e-106 389.8 261 73.9
CsaV3_6G005760 Cucumis sativus L. HOM05D005332 ORTHO05D006861 2.2e-106 389.4 260 73.1
Gohir.A11G082100 Gossypium hirsutum HOM05D005332 ORTHO05D006861 2.2e-106 389.4 259 77.2
Lj3g0013979 Lotus japonicus HOM05D005332 ORTHO05D006861 3.7e-106 388.7 264 73.5
Phvul.010G093900 Phaseolus vulgaris HOM05D005332 ORTHO05D006861 3.7e-106 388.7 257 75.9
Solyc01g094190.3 Solanum lycopersicum HOM05D005332 ORTHO05D006861 3.7e-106 388.7 261 73.2
TPR.G9802 Trifolium pratense HOM05D005332 ORTHO05D006861 3.7e-106 388.7 258 73.3
Nitab4.5_0001251g0070 Nicotiana tabacum HOM05D005332 ORTHO05D006861 1.8e-105 386.3 261 72.4
Peaxi162Scf00397g00521 Petunia axillaris HOM05D005332 ORTHO05D006861 2.4e-105 386.0 259 73.7
MELO3C022535.2 Cucumis melo HOM05D005332 ORTHO05D006861 3.1e-105 385.6 260 72.7
THA.LOC104801453 Tarenaya hassleriana HOM05D005332 ORTHO05D006861 3.1e-105 385.6 259 72.2
VMungo0331G0206 Vigna mungo HOM05D005332 ORTHO05D006861 3.1e-105 385.6 253 75.1
MSTRG.28212 Avicennia marina HOM05D005332 ORTHO05D006861 5.3e-105 384.8 261 71.6
ClCG06G000030 Citrullus lanatus HOM05D005332 ORTHO05D006861 6.9e-105 384.4 284 69.4
HanXRQChr03g0093511 Helianthus annuus HOM05D005332 ORTHO05D006861 6.9e-105 384.4 261 72.4
Nn6g33539 Nelumbo nucifera HOM05D005332 ORTHO05D006861 6.9e-105 384.4 258 73.3
Ca_18844_v3 Cicer arietinum L. HOM05D005332 ORTHO05D006861 9.1e-105 384.0 261 73.6
ECA240G0419 Erigeron canadensis HOM05D005332 ORTHO05D006861 9.1e-105 384.0 261 70.9
EL10Ac1g00521 Beta vulgaris HOM05D005332 ORTHO05D006861 1.2e-104 383.6 260 71.5
AL6G52870 Arabidopsis lyrata HOM05D005332 ORTHO05D006861 2.6e-104 382.5 260 73.1
Aqoxy5G03955 Aquilegia oxysepala HOM05D005332 ORTHO05D006861 4.5e-104 381.7 262 72.5
Os02g0826200 Oryza sativa ssp. japonica HOM05D005332 ORTHO05D006861 5.9e-104 381.3 258 71.7
SalBow5G4657 Salvia bowleyana HOM05D005332 ORTHO05D006861 7.7e-104 380.9 261 72.4
Zm00001eb259270 Zea mays HOM05D005332 ORTHO05D006861 1.3e-103 380.2 260 73.5
A02p24170 Brassica napus HOM05D005332 ORTHO05D006861 1.7e-103 379.8 262 72.1
BraA02t07408Z Brassica rapa HOM05D005332 ORTHO05D006861 1.7e-103 379.8 262 72.1
PSO782G1310 Papaver somniferum HOM05D005332 ORTHO05D006861 2.2e-103 379.4 259 71.8
Thhalv10028798m.g Eutrema salsugineum HOM05D005332 ORTHO05D006861 3.8e-103 378.6 260 71.2
BcaC03g16043 Brassica carinata HOM05D005332 ORTHO05D006861 5.0e-103 378.3 262 72.1
SalBow5G2488 Salvia bowleyana HOM05D005332 ORTHO05D006861 5.0e-103 378.3 261 71.6
Medtr8g032270 Medicago truncatula HOM05D005332 ORTHO05D006861 8.5e-103 377.5 258 71.7
BcaB01g02194 Brassica carinata HOM05D005332 ORTHO05D006861 1.9e-102 376.3 263 72.2
Oeu014686.1 Olea europaea HOM05D005332 ORTHO05D006861 1.9e-102 376.3 267 70.4
C02p38040 Brassica napus HOM05D005332 ORTHO05D006861 2.5e-102 375.9 262 71.0
Sp6g00600 Schrenkiella parvula HOM05D005332 ORTHO05D006861 4.2e-102 375.2 262 72.1
SGA_v2.0_scaffold43G16446 Striga asiatica HOM05D005332 ORTHO05D006861 7.2e-102 374.4 271 70.1
Aa31LG5G430 Aethionema arabicum HOM05D005332 ORTHO05D006861 1.6e-101 373.2 259 70.3
AT4G00560 Arabidopsis thaliana HOM05D005332 ORTHO05D006861 1.6e-101 373.2 259 70.3
CiPaw.01G056200 Carya illinoinensis HOM05D005332 ORTHO05D006861 6.1e-101 371.3 238 78.6
Carub.0006s3668 Capsella rubella HOM05D005332 ORTHO05D006861 1.4e-100 370.2 259 71.8
Migut.O00555 Erythranthe guttata HOM05D005332 ORTHO05D006861 1.4e-100 370.2 260 71.2
BolC2t09820H Brassica oleracea HOM05D005332 ORTHO05D006861 1.1e-99 367.1 274 67.9
RcHm_v2.0_Chr0c39g0503211 Rosa chinensis HOM05D005332 ORTHO05D006861 5.7e-99 364.8 241 82.2
Nitab4.5_0006669g0040 Nicotiana tabacum HOM05D005332 ORTHO05D006861 7.4e-99 364.4 315 60.0
RcHm_v2.0_Chr0c39g0503281 Rosa chinensis HOM05D005332 ORTHO05D006861 7.4e-99 364.4 244 83.2
PSO478G0627 Papaver somniferum HOM05D005332 ORTHO05D006861 3.7e-98 362.1 279 66.3
COL.COLO4_12599 Corchorus olitorius HOM05D005332 ORTHO05D006861 2.4e-97 359.4 261 71.3
AUR62004310 Chenopodium quinoa HOM05D005332 ORTHO05D006861 4.1e-97 358.6 260 66.5
ATR0680G024 Amborella trichopoda HOM05D005332 ORTHO05D006861 6.9e-97 357.8 258 66.7
MBI18_g09781_MAGBIO Magnolia biondii HOM05D005332 ORTHO05D006861 1.2e-96 357.1 260 68.5
CARHR248730 Cardamine hirsuta HOM05D005332 ORTHO05D006861 4.2e-94 348.6 239 71.1
Atru.chr5.441 Acer truncatum HOM05D005332 ORTHO05D006861 3.6e-93 345.5 222 75.2
DCAR_006914 Daucus carota HOM05D005332 ORTHO05D006861 3.0e-92 342.4 258 64.7
CDE09G0818 Ceratophyllum demersum HOM05D005332 ORTHO05D006861 4.8e-90 335.1 241 68.0
PGR042G0753 Punica granatum HOM05D005332 ORTHO05D006861 5.9e-88 328.2 223 71.3
Migut.N01426 Erythranthe guttata HOM05D005332 ORTHO05D006861 1.3e-87 327.0 224 72.3
SEGI_02313 Sequoiadendron giganteum HOM05D005332 ORTHO05D006861 1.1e-86 323.9 260 63.1
Dinv43779 Davidia involucrata HOM05D005332 ORTHO05D006861 2.5e-86 322.8 203 80.3
Mapoly0113s0013 Marchantia polymorpha HOM05D005332 ORTHO05D006861 5.9e-80 301.6 260 57.3
unitig_0.g1508 Utricularia gibba HOM05D005332 ORTHO05D006861 4.2e-78 295.4 241 63.1
Pp3c6_20490 Physcomitrium patens HOM05D005332 ORTHO05D006861 1.7e-74 283.5 262 53.4
Sc23g0003120 Simmondsia chinensis HOM05D005332 ORTHO05D006861 1.1e-73 280.8 178 74.7
MD01G1052200 Malus domestica HOM05D005332 ORTHO05D006861 1.2e-67 260.8 180 75.6
SMO137G0161 Selaginella moellendorffii HOM05D005332 ORTHO05D006861 2.6e-67 259.6 261 52.9
AUR62022761 Chenopodium quinoa HOM05D005332 ORTHO05D006861 7.0e-65 251.5 176 67.0
AagrBONN_evm.TU.Sc2ySwM_117.1953 Anthoceros agrestis HOM05D005332 ORTHO05D006861 8.3e-58 228.0 252 46.4
Psat4g153040 Pisum sativum HOM05D005332 ORTHO05D006861 3.1e-52 209.5 138 71.7
Glyma.03G015066 Glycine max HOM05D005332 ORTHO05D006861 4.9e-50 202.2 131 75.6
RcHm_v2.0_Chr1g0353211 Rosa chinensis HOM05D005332 ORTHO05D006861 8.1e-45 184.9 110 88.2
MBI18_g10614_MAGBIO Magnolia biondii HOM05D005332 ORTHO05D006861 3.1e-44 183.0 137 64.2
PRCOL_00000453 Prasinoderma coloniale HOM05D005332 ORTHO05D006861 1.5e-43 180.6 246 45.1
MCO04G198 Micromonas commoda HOM05D005332 ORTHO05D006861 5.8e-43 178.7 267 42.3
CAN.G960.12 Capsicum annuum HOM05D005332 ORTHO05D006861 4.6e-40 169.1 198 51.0
QL02p088489 Quercus lobata HOM05D005332 ORTHO05D006861 2.6e-35 153.3 111 70.3
QL03p011361 Quercus lobata HOM05D005332 ORTHO05D006861 2.6e-35 153.3 111 70.3
QL07p038896 Quercus lobata HOM05D005332 ORTHO05D006861 2.6e-35 153.3 111 70.3
QL02p088470 Quercus lobata HOM05D005332 ORTHO05D006861 3.2e-33 146.4 105 72.4
SEGI_30707 Sequoiadendron giganteum HOM05D005332 ORTHO05D006861 4.1e-33 146.0 123 58.5
RcHm_v2.0_Chr1g0353261 Rosa chinensis HOM05D005277 ORTHO05D006319 1.1e-30 137.9 84 88.1
Cre17.g718250 Chlamydomonas reinhardtii HOM05D005332 ORTHO05D006861 9.6e-30 134.8 265 37.7
arahy.Tifrunner.gnm1.ann1.F84KN2 Arachis hypogaea HOM05D005332 ORTHO05D006861 2.2e-26 123.6 102 59.8
arahy.Tifrunner.gnm1.ann1.FSVT9P Arachis hypogaea HOM05D005332 ORTHO05D006861 3.2e-25 119.8 90 63.3
Psat4g153000 Pisum sativum HOM05D005332 ORTHO05D006861 2.7e-24 116.7 76 78.9
RcHm_v2.0_Chr3g0477641 Rosa chinensis HOM05D005332 ORTHO05D006861 4.8e-21 105.9 55 90.9
MD01G1052100 Malus domestica HOM05D005332 ORTHO05D006861 6.4e-18 95.5 69 69.6
arahy.Tifrunner.gnm1.ann1.6Z7PRK Arachis hypogaea HOM05D005332 ORTHO05D006861 9.0e-12 75.1 57 59.6
arahy.Tifrunner.gnm1.ann1.G2MMRU Arachis hypogaea HOM05D005332 ORTHO05D006861 9.6e-06 55.1 44 68.2
arahy.Tifrunner.gnm1.ann1.SQV5XE Arachis hypogaea HOM05D005332 ORTHO05D004201 9.6e-06 55.1 57 54.4


User provided reference genes

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