Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0353241 Rosa chinensis HOM05D005332 ORTHO05D006861 8.3e-140 500.4 253 100.0
RcHm_v2.0_Chr1g0353111 Rosa chinensis HOM05D005332 ORTHO05D006861 3.3e-112 408.7 241 89.2
FvH4_7g13560 Fragaria vesca HOM05D005332 ORTHO05D006861 5.6e-112 407.9 241 88.8
FAN01G1890 Fragaria x ananassa HOM05D005332 ORTHO05D006861 7.4e-112 407.5 241 88.4
FAN06G0948 Fragaria x ananassa HOM05D005332 ORTHO05D006861 7.4e-112 407.5 241 88.4
FAN06G1647 Fragaria x ananassa HOM05D005332 ORTHO05D006861 9.6e-112 407.1 241 88.0
RcHm_v2.0_Chr0c39g0503211 Rosa chinensis HOM05D005332 ORTHO05D006861 2.1e-111 406.0 253 86.6
FAN03G0731 Fragaria x ananassa HOM05D005332 ORTHO05D006861 2.8e-111 405.6 241 88.0
RcHm_v2.0_Chr1g0353141 Rosa chinensis HOM05D005332 ORTHO05D006861 3.7e-111 405.2 276 81.2
RcHm_v2.0_Chr1g0353281 Rosa chinensis HOM05D005332 ORTHO05D006861 6.2e-111 404.4 241 88.4
FAN10G1762 Fragaria x ananassa HOM05D005332 ORTHO05D006861 1.4e-110 403.3 241 87.6
RcHm_v2.0_Chr0c39g0503341 Rosa chinensis HOM05D005332 ORTHO05D006861 1.4e-107 393.3 243 86.4
RcHm_v2.0_Chr1g0353331 Rosa chinensis HOM05D005332 ORTHO05D006861 1.6e-103 379.8 230 88.3
MD07G1128800 Malus domestica HOM05D005332 ORTHO05D006861 2.2e-100 369.4 239 79.9
Prupe.2G159800 Prunus persica HOM05D005332 ORTHO05D006861 5.5e-99 364.8 238 79.4
CANSAT56G3547 Cannabis sativa HOM05D005332 ORTHO05D006861 9.7e-96 354.0 238 76.9
Haze_15198 Corylus avellana HOM05D005332 ORTHO05D006861 9.0e-94 347.4 238 74.8
Manes.01G260300 Manihot esculenta HOM05D005332 ORTHO05D006861 2.5e-91 339.3 239 73.6
Rhsim07G0018900 Rhododendron simsii HOM05D005332 ORTHO05D006861 5.5e-91 338.2 238 73.5
Sabra14G0057900 Salix brachista HOM05D005332 ORTHO05D006861 5.1e-89 331.6 276 66.3
vmacro13319 Vaccinium macrocarpon HOM05D005332 ORTHO05D006861 5.1e-89 331.6 238 71.8
Actinidia09995 Actinidia chinensis HOM05D000602 ORTHO05D002573 8.7e-89 330.9 238 71.8
TAR374G0257 Trochodendron aralioides HOM05D005332 ORTHO05D006861 8.7e-89 330.9 240 72.5
CSS0028869 Camellia sinensis var. sinensis HOM05D005332 ORTHO05D006861 1.1e-88 330.5 238 71.4
CSS0045846 Camellia sinensis var. sinensis HOM05D005332 ORTHO05D006861 1.1e-88 330.5 238 71.4
CiPaw.01G056200 Carya illinoinensis HOM05D005332 ORTHO05D006861 1.1e-88 330.5 238 71.8
Potri.014G079700 Populus trichocarpa HOM05D005332 ORTHO05D006861 1.5e-88 330.1 239 72.8
TWI59G1218 Tripterygium wilfordii HOM05D005332 ORTHO05D006861 1.9e-88 329.7 238 72.3
Cpa.g.sc704.3 Carica papaya HOM05D005332 ORTHO05D006861 2.5e-88 329.3 240 71.2
Ciclev10021196m.g Citrus clementina HOM05D005332 ORTHO05D006861 5.7e-88 328.2 239 71.5
GSVIVG01026821001 Vitis vinifera HOM05D005332 ORTHO05D006861 9.7e-88 327.4 239 71.5
Eucgr.E00187 Eucalyptus grandis HOM05D005332 ORTHO05D006861 2.2e-87 326.2 239 70.3
QL08p049836 Quercus lobata HOM05D005332 ORTHO05D006861 2.2e-87 326.2 274 65.3
Sed0022570 Sechium edule HOM05D005332 ORTHO05D006861 2.2e-87 326.2 238 68.5
Lsat_1_v5_gn_3_136741 Lactuca sativa HOM05D005332 ORTHO05D006861 1.4e-86 323.6 239 68.6
Glyma.07G075200 Glycine max HOM05D005332 ORTHO05D006861 3.1e-86 322.4 238 68.9
RcHm_v2.0_Chr0c39g0503281 Rosa chinensis HOM05D005332 ORTHO05D006861 3.1e-86 322.4 276 69.9
HPP92_025722 Vanilla planifolia HOM05D005332 ORTHO05D006861 3.1e-86 322.4 239 67.4
Lalb_Chr04g0256681 Lupinus albus HOM05D005332 ORTHO05D006861 4.1e-86 322.0 238 68.1
Phvul.010G093900 Phaseolus vulgaris HOM05D005332 ORTHO05D006861 4.1e-86 322.0 237 70.0
PGSC0003DMG402000019 Solanum tuberosum HOM05D005332 ORTHO05D006861 4.1e-86 322.0 239 68.6
Gorai.007G097000 Gossypium raimondii HOM05D005332 ORTHO05D006861 5.3e-86 321.6 239 70.7
Sopen01g037990 Solanum pennellii HOM05D005332 ORTHO05D006861 5.3e-86 321.6 239 68.6
Gohir.D11G091000 Gossypium hirsutum HOM05D005332 ORTHO05D006861 6.9e-86 321.2 239 70.7
Solyc01g094190.3 Solanum lycopersicum HOM05D005332 ORTHO05D006861 6.9e-86 321.2 239 68.6
Aqoxy5G03955 Aquilegia oxysepala HOM05D005332 ORTHO05D006861 9.1e-86 320.9 240 69.2
Atru.chr5.441 Acer truncatum HOM05D005332 ORTHO05D006861 1.2e-85 320.5 201 77.6
Nn6g33539 Nelumbo nucifera HOM05D005332 ORTHO05D006861 1.2e-85 320.5 238 68.5
Peaxi162Scf00397g00521 Petunia axillaris HOM05D005332 ORTHO05D006861 1.2e-85 320.5 239 68.2
Ah.05g176380 Amaranthus hybridus HOM05D005332 ORTHO05D006861 1.5e-85 320.1 240 67.5
Thecc.01G365300 Theobroma cacao HOM05D005332 ORTHO05D006861 1.5e-85 320.1 239 70.3
Lj9A579T30 Lonicera japonica HOM05D005332 ORTHO05D006861 2.0e-85 319.7 238 70.2
Hund27309 Selenicereus undatus HOM05D005332 ORTHO05D006861 2.6e-85 319.3 238 67.2
CAN.G78.17 Capsicum annuum HOM05D005332 ORTHO05D006861 3.4e-85 318.9 239 67.8
Cc02_g37460 Coffea canephora HOM05D005332 ORTHO05D006861 4.5e-85 318.5 239 67.8
Gohir.A11G082100 Gossypium hirsutum HOM05D005332 ORTHO05D006861 4.5e-85 318.5 239 70.7
VMungo0331G0206 Vigna mungo HOM05D005332 ORTHO05D006861 5.9e-85 318.2 233 68.7
Lj3g0013979 Lotus japonicus HOM05D005332 ORTHO05D006861 7.7e-85 317.8 252 65.9
CsaV3_6G005760 Cucumis sativus L. HOM05D005332 ORTHO05D006861 1.0e-84 317.4 238 67.2
Os02g0826200 Oryza sativa ssp. japonica HOM05D005332 ORTHO05D006861 1.0e-84 317.4 238 66.8
EL10Ac1g00521 Beta vulgaris HOM05D005332 ORTHO05D006861 1.7e-84 316.6 238 66.4
ClCG06G000030 Citrullus lanatus HOM05D005332 ORTHO05D006861 2.9e-84 315.8 264 62.9
HanXRQChr03g0093511 Helianthus annuus HOM05D005332 ORTHO05D006861 2.9e-84 315.8 239 68.2
arahy.Tifrunner.gnm1.ann1.CH4HI7 Arachis hypogaea HOM05D005332 ORTHO05D006861 5.0e-84 315.1 239 66.9
Duzib138G1089 Durio zibethinus HOM05D005332 ORTHO05D006861 5.0e-84 315.1 239 69.0
arahy.Tifrunner.gnm1.ann1.W4LYDN Arachis hypogaea HOM05D005332 ORTHO05D006861 6.5e-84 314.7 239 67.4
PSO782G1310 Papaver somniferum HOM05D005332 ORTHO05D006861 6.5e-84 314.7 239 66.5
TPR.G9802 Trifolium pratense HOM05D005332 ORTHO05D006861 1.1e-83 313.9 238 65.5
MELO3C022535.2 Cucumis melo HOM05D005332 ORTHO05D006861 1.9e-83 313.2 238 66.8
Zm00001eb259270 Zea mays HOM05D005332 ORTHO05D006861 1.9e-83 313.2 240 67.5
Oeu014686.1 Olea europaea HOM05D005332 ORTHO05D006861 2.5e-83 312.8 245 65.3
ECA240G0419 Erigeron canadensis HOM05D005332 ORTHO05D006861 4.2e-83 312.0 239 66.1
Nitab4.5_0001251g0070 Nicotiana tabacum HOM05D005332 ORTHO05D006861 4.2e-83 312.0 239 66.5
SalBow5G4657 Salvia bowleyana HOM05D005332 ORTHO05D006861 9.4e-83 310.8 239 66.9
AL6G52870 Arabidopsis lyrata HOM05D005332 ORTHO05D006861 2.7e-82 309.3 240 65.8
AT4G00560 Arabidopsis thaliana HOM05D005332 ORTHO05D006861 2.7e-82 309.3 239 64.9
MSTRG.28212 Avicennia marina HOM05D005332 ORTHO05D006861 3.6e-82 308.9 239 65.7
SalBow5G2488 Salvia bowleyana HOM05D005332 ORTHO05D006861 7.9e-82 307.8 239 65.7
SGA_v2.0_scaffold43G16446 Striga asiatica HOM05D005332 ORTHO05D006861 7.9e-82 307.8 249 65.1
THA.LOC104801453 Tarenaya hassleriana HOM05D005332 ORTHO05D006861 1.0e-81 307.4 239 64.9
Ca_18844_v3 Cicer arietinum L. HOM05D005332 ORTHO05D006861 1.8e-81 306.6 239 66.5
Sp6g00600 Schrenkiella parvula HOM05D005332 ORTHO05D006861 3.0e-81 305.8 242 65.3
Thhalv10028798m.g Eutrema salsugineum HOM05D005332 ORTHO05D006861 3.9e-81 305.4 240 64.6
CARHR248730 Cardamine hirsuta HOM05D005332 ORTHO05D006861 1.1e-80 303.9 239 64.4
PGR042G0753 Punica granatum HOM05D005332 ORTHO05D006861 1.1e-80 303.9 207 72.5
BcaC03g16043 Brassica carinata HOM05D005332 ORTHO05D006861 2.0e-80 303.1 242 64.9
Carub.0006s3668 Capsella rubella HOM05D005332 ORTHO05D006861 2.6e-80 302.8 239 65.7
Medtr8g032270 Medicago truncatula HOM05D005332 ORTHO05D006861 2.6e-80 302.8 238 63.9
Aa31LG5G430 Aethionema arabicum HOM05D005332 ORTHO05D006861 3.3e-80 302.4 239 63.6
BolC2t09820H Brassica oleracea HOM05D005332 ORTHO05D006861 4.4e-80 302.0 245 63.7
A02p24170 Brassica napus HOM05D005332 ORTHO05D006861 5.7e-80 301.6 242 64.5
BraA02t07408Z Brassica rapa HOM05D005332 ORTHO05D006861 5.7e-80 301.6 242 64.5
C02p38040 Brassica napus HOM05D005332 ORTHO05D006861 9.7e-80 300.8 242 64.0
Migut.O00555 Erythranthe guttata HOM05D005332 ORTHO05D006861 1.7e-79 300.1 238 65.5
PSO478G0627 Papaver somniferum HOM05D005332 ORTHO05D006861 2.2e-79 299.7 259 61.4
ATR0680G024 Amborella trichopoda HOM05D005332 ORTHO05D006861 2.8e-79 299.3 238 62.2
BcaB01g02194 Brassica carinata HOM05D005332 ORTHO05D006861 3.7e-79 298.9 243 65.0
AUR62004310 Chenopodium quinoa HOM05D005332 ORTHO05D006861 4.1e-78 295.4 238 61.8
Migut.N01426 Erythranthe guttata HOM05D005332 ORTHO05D006861 5.3e-78 295.0 201 73.1
Dinv43779 Davidia involucrata HOM05D005332 ORTHO05D006861 1.5e-77 293.5 184 79.3
COL.COLO4_12599 Corchorus olitorius HOM05D005332 ORTHO05D006861 2.2e-76 289.7 239 64.9
Nitab4.5_0006669g0040 Nicotiana tabacum HOM05D005332 ORTHO05D006861 2.2e-76 289.7 293 54.3
MBI18_g09781_MAGBIO Magnolia biondii HOM05D005332 ORTHO05D006861 6.5e-76 288.1 238 63.9
CDE09G0818 Ceratophyllum demersum HOM05D005332 ORTHO05D006861 1.4e-75 287.0 201 69.2
DCAR_006914 Daucus carota HOM05D005332 ORTHO05D006861 1.4e-75 287.0 238 60.1
MD01G1052200 Malus domestica HOM05D005332 ORTHO05D006861 2.6e-69 266.2 163 82.8
SEGI_02313 Sequoiadendron giganteum HOM05D005332 ORTHO05D006861 2.2e-68 263.1 240 58.8
unitig_0.g1508 Utricularia gibba HOM05D005332 ORTHO05D006861 1.2e-66 257.3 241 56.8
Sc23g0003120 Simmondsia chinensis HOM05D005332 ORTHO05D006861 4.7e-66 255.4 156 77.6
Mapoly0113s0013 Marchantia polymorpha HOM05D005332 ORTHO05D006861 3.7e-63 245.7 240 52.9
Pp3c6_20490 Physcomitrium patens HOM05D005332 ORTHO05D006861 5.5e-59 231.9 210 53.8
AUR62022761 Chenopodium quinoa HOM05D005332 ORTHO05D006861 1.2e-58 230.7 156 69.2
SMO137G0161 Selaginella moellendorffii HOM05D005332 ORTHO05D006861 2.0e-53 213.4 241 48.5
Glyma.03G015066 Glycine max HOM05D005332 ORTHO05D006861 3.6e-50 202.6 131 74.8
AagrBONN_evm.TU.Sc2ySwM_117.1953 Anthoceros agrestis HOM05D005332 ORTHO05D006861 2.3e-49 199.9 232 44.8
Psat4g153040 Pisum sativum HOM05D005332 ORTHO05D006861 8.0e-42 174.9 116 71.6
CAN.G960.12 Capsicum annuum HOM05D005332 ORTHO05D006861 1.8e-38 163.7 116 72.4
MBI18_g10614_MAGBIO Magnolia biondii HOM05D005332 ORTHO05D006861 1.0e-36 157.9 115 67.8
PRCOL_00000453 Prasinoderma coloniale HOM05D005332 ORTHO05D006861 2.1e-34 150.2 203 44.8
RcHm_v2.0_Chr1g0353211 Rosa chinensis HOM05D005332 ORTHO05D006861 9.8e-32 141.4 110 72.7
MCO04G198 Micromonas commoda HOM05D005332 ORTHO05D006861 1.3e-28 131.0 247 38.1
Cre17.g718250 Chlamydomonas reinhardtii HOM05D005332 ORTHO05D006861 5.6e-27 125.6 240 37.9
arahy.Tifrunner.gnm1.ann1.F84KN2 Arachis hypogaea HOM05D005332 ORTHO05D006861 2.8e-26 123.2 102 59.8
arahy.Tifrunner.gnm1.ann1.FSVT9P Arachis hypogaea HOM05D005332 ORTHO05D006861 1.4e-25 120.9 90 63.3
QL02p088489 Quercus lobata HOM05D005332 ORTHO05D006861 1.3e-23 114.4 85 68.2
QL03p011361 Quercus lobata HOM05D005332 ORTHO05D006861 1.3e-23 114.4 85 68.2
QL07p038896 Quercus lobata HOM05D005332 ORTHO05D006861 1.3e-23 114.4 85 68.2
QL02p088470 Quercus lobata HOM05D005332 ORTHO05D006861 9.2e-22 108.2 105 59.0
SEGI_30707 Sequoiadendron giganteum HOM05D005332 ORTHO05D006861 9.2e-22 108.2 123 48.8
RcHm_v2.0_Chr1g0353261 Rosa chinensis HOM05D005277 ORTHO05D006319 2.4e-17 93.6 98 61.2
MD01G1052100 Malus domestica HOM05D005332 ORTHO05D006861 1.5e-11 74.3 43 86.0
arahy.Tifrunner.gnm1.ann1.6Z7PRK Arachis hypogaea HOM05D005332 ORTHO05D006861 5.6e-11 72.4 57 57.9
Psat4g153000 Pisum sativum HOM05D005332 ORTHO05D006861 1.6e-10 70.9 75 56.0
RcHm_v2.0_Chr3g0477641 Rosa chinensis HOM05D005332 ORTHO05D006861 1.2e-08 64.7 34 94.1


User provided reference genes

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