Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0353211 Rosa chinensis HOM05D005332 ORTHO05D006861 1.3e-64 249.6 126 100.0
FvH4_7g13560 Fragaria vesca HOM05D005332 ORTHO05D006861 4.1e-47 191.4 110 90.0
FAN01G1890 Fragaria x ananassa HOM05D005332 ORTHO05D006861 4.1e-47 191.4 110 90.0
FAN03G0731 Fragaria x ananassa HOM05D005332 ORTHO05D006861 4.1e-47 191.4 110 90.0
FAN06G0948 Fragaria x ananassa HOM05D005332 ORTHO05D006861 4.1e-47 191.4 110 90.0
FAN06G1647 Fragaria x ananassa HOM05D005332 ORTHO05D006861 4.1e-47 191.4 110 90.0
FAN10G1762 Fragaria x ananassa HOM05D005332 ORTHO05D006861 9.2e-47 190.3 110 89.1
RcHm_v2.0_Chr1g0353141 Rosa chinensis HOM05D005332 ORTHO05D006861 9.2e-47 190.3 110 90.0
RcHm_v2.0_Chr0c39g0503341 Rosa chinensis HOM05D005332 ORTHO05D006861 2.7e-46 188.7 110 88.2
RcHm_v2.0_Chr1g0353111 Rosa chinensis HOM05D005332 ORTHO05D006861 2.7e-46 188.7 110 88.2
RcHm_v2.0_Chr1g0353281 Rosa chinensis HOM05D005332 ORTHO05D006861 1.7e-45 186.0 110 88.2
RcHm_v2.0_Chr1g0353331 Rosa chinensis HOM05D005332 ORTHO05D006861 8.1e-43 177.2 99 91.9
CANSAT56G3547 Cannabis sativa HOM05D005332 ORTHO05D006861 2.2e-40 169.1 107 80.4
MD07G1128800 Malus domestica HOM05D005332 ORTHO05D006861 3.7e-40 168.3 108 78.7
TAR374G0257 Trochodendron aralioides HOM05D005332 ORTHO05D006861 3.2e-39 165.2 109 78.0
HPP92_025722 Vanilla planifolia HOM05D005332 ORTHO05D006861 4.1e-39 164.9 108 77.8
Prupe.2G159800 Prunus persica HOM05D005332 ORTHO05D006861 9.2e-39 163.7 107 77.6
Manes.01G260300 Manihot esculenta HOM05D005332 ORTHO05D006861 3.5e-38 161.8 108 75.9
Actinidia09995 Actinidia chinensis HOM05D000602 ORTHO05D002573 6.0e-38 161.0 107 75.7
Rhsim07G0018900 Rhododendron simsii HOM05D005332 ORTHO05D006861 7.8e-38 160.6 107 76.6
Sed0022570 Sechium edule HOM05D005332 ORTHO05D006861 7.8e-38 160.6 107 75.7
Haze_15198 Corylus avellana HOM05D005332 ORTHO05D006861 1.0e-37 160.2 107 75.7
QL08p049836 Quercus lobata HOM05D005332 ORTHO05D006861 2.3e-37 159.1 107 76.6
vmacro13319 Vaccinium macrocarpon HOM05D005332 ORTHO05D006861 3.0e-37 158.7 107 74.8
Potri.014G079700 Populus trichocarpa HOM05D005332 ORTHO05D006861 5.1e-37 157.9 108 75.9
RcHm_v2.0_Chr1g0353261 Rosa chinensis HOM05D005277 ORTHO05D006319 5.1e-37 157.9 84 98.8
Sabra14G0057900 Salix brachista HOM05D005332 ORTHO05D006861 6.6e-37 157.5 108 75.9
Aqoxy5G03955 Aquilegia oxysepala HOM05D005332 ORTHO05D006861 8.6e-37 157.1 109 70.6
CSS0028869 Camellia sinensis var. sinensis HOM05D005332 ORTHO05D006861 8.6e-37 157.1 107 74.8
CSS0045846 Camellia sinensis var. sinensis HOM05D005332 ORTHO05D006861 2.5e-36 155.6 107 73.8
CsaV3_6G005760 Cucumis sativus L. HOM05D005332 ORTHO05D006861 9.5e-36 153.7 107 71.0
Lsat_1_v5_gn_3_136741 Lactuca sativa HOM05D005332 ORTHO05D006861 9.5e-36 153.7 108 71.3
Lalb_Chr04g0256681 Lupinus albus HOM05D005332 ORTHO05D006861 9.5e-36 153.7 107 72.9
Solyc01g094190.3 Solanum lycopersicum HOM05D005332 ORTHO05D006861 9.5e-36 153.7 108 71.3
Cpa.g.sc704.3 Carica papaya HOM05D005332 ORTHO05D006861 1.2e-35 153.3 109 69.7
Ciclev10021196m.g Citrus clementina HOM05D005332 ORTHO05D006861 1.2e-35 153.3 107 72.0
Glyma.07G075200 Glycine max HOM05D005332 ORTHO05D006861 1.2e-35 153.3 107 72.0
Lj3g0013979 Lotus japonicus HOM05D005332 ORTHO05D006861 1.2e-35 153.3 107 71.0
PGSC0003DMG402000019 Solanum tuberosum HOM05D005332 ORTHO05D006861 1.6e-35 152.9 108 70.4
Phvul.010G093900 Phaseolus vulgaris HOM05D005332 ORTHO05D006861 2.1e-35 152.5 106 73.6
CAN.G78.17 Capsicum annuum HOM05D005332 ORTHO05D006861 2.8e-35 152.1 108 69.4
PSO782G1310 Papaver somniferum HOM05D005332 ORTHO05D006861 2.8e-35 152.1 108 70.4
Hund27309 Selenicereus undatus HOM05D005332 ORTHO05D006861 2.8e-35 152.1 107 70.1
Sopen01g037990 Solanum pennellii HOM05D005332 ORTHO05D006861 2.8e-35 152.1 108 70.4
MELO3C022535.2 Cucumis melo HOM05D005332 ORTHO05D006861 3.6e-35 151.8 107 71.0
PSO478G0627 Papaver somniferum HOM05D005332 ORTHO05D006861 3.6e-35 151.8 108 70.4
Os02g0826200 Oryza sativa ssp. japonica HOM05D005332 ORTHO05D006861 4.7e-35 151.4 107 68.2
SalBow5G2488 Salvia bowleyana HOM05D005332 ORTHO05D006861 4.7e-35 151.4 108 70.4
CiPaw.01G056200 Carya illinoinensis HOM05D005332 ORTHO05D006861 6.2e-35 151.0 107 72.9
ECA240G0419 Erigeron canadensis HOM05D005332 ORTHO05D006861 6.2e-35 151.0 108 69.4
Eucgr.E00187 Eucalyptus grandis HOM05D005332 ORTHO05D006861 6.2e-35 151.0 108 73.1
SalBow5G4657 Salvia bowleyana HOM05D005332 ORTHO05D006861 6.2e-35 151.0 108 69.4
arahy.Tifrunner.gnm1.ann1.CH4HI7 Arachis hypogaea HOM05D005332 ORTHO05D006861 8.1e-35 150.6 108 69.4
arahy.Tifrunner.gnm1.ann1.W4LYDN Arachis hypogaea HOM05D005332 ORTHO05D006861 8.1e-35 150.6 108 69.4
Medtr8g032270 Medicago truncatula HOM05D005332 ORTHO05D006861 1.1e-34 150.2 107 67.3
TPR.G9802 Trifolium pratense HOM05D005332 ORTHO05D006861 1.1e-34 150.2 106 69.8
GSVIVG01026821001 Vitis vinifera HOM05D005332 ORTHO05D006861 1.1e-34 150.2 108 70.4
Sp6g00600 Schrenkiella parvula HOM05D005332 ORTHO05D006861 1.4e-34 149.8 111 70.3
Ah.05g176380 Amaranthus hybridus HOM05D005332 ORTHO05D006861 1.8e-34 149.4 109 68.8
TWI59G1218 Tripterygium wilfordii HOM05D005332 ORTHO05D006861 1.8e-34 149.4 107 73.8
HanXRQChr03g0093511 Helianthus annuus HOM05D005332 ORTHO05D006861 3.1e-34 148.7 108 67.6
Peaxi162Scf00397g00521 Petunia axillaris HOM05D005332 ORTHO05D006861 4.0e-34 148.3 108 69.4
THA.LOC104801453 Tarenaya hassleriana HOM05D005332 ORTHO05D006861 5.2e-34 147.9 108 65.7
VMungo0331G0206 Vigna mungo HOM05D005332 ORTHO05D006861 5.2e-34 147.9 102 72.5
AL6G52870 Arabidopsis lyrata HOM05D005332 ORTHO05D006861 6.8e-34 147.5 109 67.9
AT4G00560 Arabidopsis thaliana HOM05D005332 ORTHO05D006861 6.8e-34 147.5 108 65.7
Lj9A579T30 Lonicera japonica HOM05D005332 ORTHO05D006861 6.8e-34 147.5 107 69.2
BcaB01g02194 Brassica carinata HOM05D005332 ORTHO05D006861 8.9e-34 147.1 109 68.8
Gorai.007G097000 Gossypium raimondii HOM05D005332 ORTHO05D006861 8.9e-34 147.1 107 71.0
A02p24170 Brassica napus HOM05D005332 ORTHO05D006861 1.2e-33 146.7 109 68.8
BraA02t07408Z Brassica rapa HOM05D005332 ORTHO05D006861 1.2e-33 146.7 109 68.8
C02p38040 Brassica napus HOM05D005332 ORTHO05D006861 2.0e-33 146.0 109 67.9
BolC2t09820H Brassica oleracea HOM05D005332 ORTHO05D006861 2.0e-33 146.0 109 67.9
Thecc.01G365300 Theobroma cacao HOM05D005332 ORTHO05D006861 2.0e-33 146.0 107 70.1
Aa31LG5G430 Aethionema arabicum HOM05D005332 ORTHO05D006861 2.6e-33 145.6 108 65.7
BcaC03g16043 Brassica carinata HOM05D005332 ORTHO05D006861 2.6e-33 145.6 109 68.8
Nn6g33539 Nelumbo nucifera HOM05D005332 ORTHO05D006861 2.6e-33 145.6 107 67.3
Ca_18844_v3 Cicer arietinum L. HOM05D005332 ORTHO05D006861 4.4e-33 144.8 108 69.4
Cc02_g37460 Coffea canephora HOM05D005332 ORTHO05D006861 4.4e-33 144.8 108 67.6
Zm00001eb259270 Zea mays HOM05D005332 ORTHO05D006861 4.4e-33 144.8 108 68.5
Duzib138G1089 Durio zibethinus HOM05D005332 ORTHO05D006861 5.8e-33 144.4 107 70.1
DCAR_006914 Daucus carota HOM05D005332 ORTHO05D006861 7.6e-33 144.1 107 64.5
Gohir.D11G091000 Gossypium hirsutum HOM05D005332 ORTHO05D006861 7.6e-33 144.1 107 70.1
Gohir.A11G082100 Gossypium hirsutum HOM05D005332 ORTHO05D006861 9.9e-33 143.7 109 67.9
Nitab4.5_0006669g0040 Nicotiana tabacum HOM05D005332 ORTHO05D006861 9.9e-33 143.7 108 64.8
MSTRG.28212 Avicennia marina HOM05D005332 ORTHO05D006861 1.3e-32 143.3 108 64.8
Thhalv10028798m.g Eutrema salsugineum HOM05D005332 ORTHO05D006861 1.3e-32 143.3 109 67.0
Nitab4.5_0001251g0070 Nicotiana tabacum HOM05D005332 ORTHO05D006861 1.3e-32 143.3 108 65.7
SGA_v2.0_scaffold43G16446 Striga asiatica HOM05D005332 ORTHO05D006861 1.3e-32 143.3 118 61.9
EL10Ac1g00521 Beta vulgaris HOM05D005332 ORTHO05D006861 1.7e-32 142.9 107 67.3
Carub.0006s3668 Capsella rubella HOM05D005332 ORTHO05D006861 2.2e-32 142.5 108 67.6
RcHm_v2.0_Chr0c39g0503211 Rosa chinensis HOM05D005332 ORTHO05D006861 2.2e-32 142.5 110 72.7
RcHm_v2.0_Chr1g0353241 Rosa chinensis HOM05D005332 ORTHO05D006861 2.2e-32 142.5 110 72.7
ClCG06G000030 Citrullus lanatus HOM05D005332 ORTHO05D006861 3.7e-32 141.7 133 59.4
RcHm_v2.0_Chr0c39g0503281 Rosa chinensis HOM05D005332 ORTHO05D006861 6.4e-32 141.0 110 73.6
CARHR248730 Cardamine hirsuta HOM05D005332 ORTHO05D006861 8.4e-32 140.6 107 65.4
QL02p088470 Quercus lobata HOM05D005332 ORTHO05D006861 1.9e-31 139.4 105 68.6
Migut.O00555 Erythranthe guttata HOM05D005332 ORTHO05D006861 2.4e-31 139.0 107 65.4
Oeu014686.1 Olea europaea HOM05D005332 ORTHO05D006861 4.1e-31 138.3 114 64.0
ATR0680G024 Amborella trichopoda HOM05D005332 ORTHO05D006861 2.7e-30 135.6 107 62.6
Dinv43779 Davidia involucrata HOM05D005332 ORTHO05D006861 1.0e-29 133.7 89 75.3
unitig_0.g1508 Utricularia gibba HOM05D005332 ORTHO05D006861 3.0e-29 132.1 128 54.7
AUR62004310 Chenopodium quinoa HOM05D005332 ORTHO05D006861 4.3e-28 128.3 107 58.9
MD01G1052200 Malus domestica HOM05D005332 ORTHO05D006861 2.8e-27 125.6 108 63.9
MBI18_g09781_MAGBIO Magnolia biondii HOM05D005332 ORTHO05D006861 1.1e-26 123.6 107 61.7
SEGI_02313 Sequoiadendron giganteum HOM05D005332 ORTHO05D006861 1.1e-26 123.6 107 58.9
SEGI_30707 Sequoiadendron giganteum HOM05D005332 ORTHO05D006861 1.1e-26 123.6 107 58.9
QL02p088489 Quercus lobata HOM05D005332 ORTHO05D006861 1.2e-25 120.2 96 64.6
QL03p011361 Quercus lobata HOM05D005332 ORTHO05D006861 1.2e-25 120.2 96 64.6
QL07p038896 Quercus lobata HOM05D005332 ORTHO05D006861 1.2e-25 120.2 96 64.6
CDE09G0818 Ceratophyllum demersum HOM05D005332 ORTHO05D006861 2.6e-25 119.0 89 66.3
Mapoly0113s0013 Marchantia polymorpha HOM05D005332 ORTHO05D006861 2.6e-25 119.0 108 55.6
COL.COLO4_12599 Corchorus olitorius HOM05D005332 ORTHO05D006861 5.8e-25 117.9 107 59.8
SMO137G0161 Selaginella moellendorffii HOM05D005332 ORTHO05D006861 5.4e-23 111.3 125 48.0
Psat4g153000 Pisum sativum HOM05D005332 ORTHO05D006861 4.6e-22 108.2 74 74.3
Pp3c6_20490 Physcomitrium patens HOM05D005332 ORTHO05D006861 1.0e-21 107.1 107 52.3
Atru.chr5.441 Acer truncatum HOM05D005332 ORTHO05D006861 3.9e-21 105.1 71 70.4
PGR042G0753 Punica granatum HOM05D005332 ORTHO05D006861 6.2e-19 97.8 69 66.7
Migut.N01426 Erythranthe guttata HOM05D005332 ORTHO05D006861 3.1e-18 95.5 71 67.6
MCO04G198 Micromonas commoda HOM05D005332 ORTHO05D006861 6.4e-16 87.8 107 45.8
Glyma.03G015066 Glycine max HOM05D005332 ORTHO05D006861 1.7e-13 79.7 52 73.1
PRCOL_00000453 Prasinoderma coloniale HOM05D005332 ORTHO05D006861 7.4e-12 74.3 103 42.7
AagrBONN_evm.TU.Sc2ySwM_117.1953 Anthoceros agrestis HOM05D005332 ORTHO05D006861 1.2e-09 67.0 68 45.6


User provided reference genes

Program Settings