Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr0c39g0503251 Rosa chinensis HOM05D005223 ORTHO05D006449 2.4e-40 168.3 80 100.0
RcHm_v2.0_Chr1g0353191 Rosa chinensis HOM05D005223 ORTHO05D006449 2.4e-40 168.3 80 100.0
RcHm_v2.0_Chr7g0191161 Rosa chinensis HOM05D005223 ORTHO05D006449 9.7e-26 119.8 60 95.0
FvH4_5g07490 Fragaria vesca HOM05D005223 ORTHO05D006449 2.4e-24 115.2 60 88.3
FAN04G2946 Fragaria x ananassa HOM05D005223 ORTHO05D006449 9.1e-24 113.2 60 88.3
FAN13G2650 Fragaria x ananassa HOM05D005223 ORTHO05D006449 9.1e-24 113.2 60 88.3
FAN18G3380 Fragaria x ananassa HOM05D005223 ORTHO05D006449 9.1e-24 113.2 60 88.3
FvH4_5g07461 Fragaria vesca HOM05D005223 ORTHO05D006449 3.4e-23 111.3 60 86.7
Prupe.5G157000 Prunus persica HOM05D005223 ORTHO05D006449 8.8e-19 96.7 60 73.3
FvH4_3g25520 Fragaria vesca HOM05D005223 ORTHO05D006449 2.0e-18 95.5 64 75.0
MD14G1163600 Malus domestica HOM05D005223 ORTHO05D006449 9.7e-18 93.2 55 76.4
QL10p005060 Quercus lobata HOM05D005223 ORTHO05D006449 2.8e-17 91.7 66 63.6
CiPaw.12G035700 Carya illinoinensis HOM05D005223 ORTHO05D006449 3.7e-17 91.3 59 69.5
GSVIVG01007540001 Vitis vinifera HOM05D005223 ORTHO05D006449 1.8e-16 89.0 70 57.1
Atru.chr9.1012 Acer truncatum HOM05D005223 ORTHO05D006449 4.1e-16 87.8 55 74.5
Haze_07276 Corylus avellana HOM05D005223 ORTHO05D006449 7.0e-16 87.0 60 65.0
Eucgr.B00148 Eucalyptus grandis HOM05D005223 ORTHO05D006449 9.1e-16 86.7 69 56.5
Dinv38469 Davidia involucrata HOM05D005223 ORTHO05D006449 1.2e-15 86.3 60 61.7
CSS0037650 Camellia sinensis var. sinensis HOM05D005223 ORTHO05D006449 1.6e-15 85.9 53 69.8
CANSAT80G2773 Cannabis sativa HOM05D005223 ORTHO05D006449 2.0e-15 85.5 64 57.8
Potri.015G090700 Populus trichocarpa HOM05D005223 ORTHO05D006449 4.5e-15 84.3 66 59.1
Thecc.03G122800 Theobroma cacao HOM05D005223 ORTHO05D006449 4.5e-15 84.3 59 64.4
Eucgr.L01337 Eucalyptus grandis HOM05D005223 ORTHO05D006449 5.9e-15 84.0 64 57.8
CSS0005553 Camellia sinensis var. sinensis HOM05D005223 ORTHO05D006449 7.7e-15 83.6 53 67.9
Sabra15G0112800 Salix brachista HOM05D005223 ORTHO05D000001 1.0e-14 83.2 66 59.1
Cfa018892 Carpinus fangiana HOM05D005223 ORTHO05D006449 1.3e-14 82.8 58 63.8
Sed0011232 Sechium edule HOM05D005223 ORTHO05D006449 1.3e-14 82.8 58 63.8
Gohir.A07G053500 Gossypium hirsutum HOM05D005223 ORTHO05D006449 2.2e-14 82.0 58 63.8
HanXRQChr05g0154741 Helianthus annuus HOM05D005223 ORTHO05D006449 2.2e-14 82.0 55 61.8
Cc04_g10370 Coffea canephora HOM05D005223 ORTHO05D006449 2.9e-14 81.6 70 52.9
Gorai.001G061400 Gossypium raimondii HOM05D005223 ORTHO05D006449 3.8e-14 81.3 59 61.0
Hma1.2p1_0123F.1_g058130 Hydrangea macrophylla HOM05D005223 ORTHO05D006449 3.8e-14 81.3 53 66.0
Lj9C475T6 Lonicera japonica HOM05D005223 ORTHO05D006449 3.8e-14 81.3 59 57.6
Manes.06G115300 Manihot esculenta HOM05D005223 ORTHO05D006449 5.0e-14 80.9 58 62.1
Sc10g0010350 Simmondsia chinensis HOM05D005223 ORTHO05D006449 5.0e-14 80.9 59 54.2
ECA246G2102 Erigeron canadensis HOM05D005223 ORTHO05D006449 6.5e-14 80.5 59 55.9
Gohir.D07G057900 Gossypium hirsutum HOM05D005223 ORTHO05D006449 6.5e-14 80.5 59 61.0
Psat5g141880 Pisum sativum HOM05D005223 ORTHO05D006449 6.5e-14 80.5 58 55.2
ClCG03G003490 Citrullus lanatus HOM05D005223 ORTHO05D006449 8.5e-14 80.1 55 63.6
Cpa.g.sc52.34 Carica papaya HOM05D005223 ORTHO05D006449 1.1e-13 79.7 59 57.6
MELO3C002332.2 Cucumis melo HOM05D005223 ORTHO05D006449 1.1e-13 79.7 55 63.6
CsaV3_1G009290 Cucumis sativus L. HOM05D005223 ORTHO05D006449 1.1e-13 79.7 55 63.6
TAR629G2346 Trochodendron aralioides HOM05D005223 ORTHO05D006449 1.5e-13 79.3 70 51.4
Migut.I00475 Erythranthe guttata HOM05D005223 ORTHO05D006449 1.9e-13 79.0 55 54.5
Lsat_1_v5_gn_5_13240 Lactuca sativa HOM05D005223 ORTHO05D006449 2.5e-13 78.6 54 61.1
Medtr3g075100 Medicago truncatula HOM05D005223 ORTHO05D006449 2.5e-13 78.6 59 49.2
Lj1g0000662 Lotus japonicus HOM05D005223 ORTHO05D006449 5.5e-13 77.4 58 55.2
COL.COLO4_09267 Corchorus olitorius HOM05D005223 ORTHO05D006449 7.2e-13 77.0 59 57.6
TPR.G13978 Trifolium pratense HOM05D005223 ORTHO05D006449 7.2e-13 77.0 58 51.7
Aqoxy5G03583 Aquilegia oxysepala HOM05D005223 ORTHO05D006449 1.2e-12 76.3 58 55.2
Oeu057221.1 Olea europaea HOM05D005223 ORTHO05D006449 1.2e-12 76.3 55 52.7
SalBow5G2547 Salvia bowleyana HOM05D005223 ORTHO05D006449 1.2e-12 76.3 74 43.2
Glyma.04G193000 Glycine max HOM05D005223 ORTHO05D006449 1.6e-12 75.9 59 50.8
Rhsim08G0185000 Rhododendron simsii HOM05D005223 ORTHO05D006449 1.6e-12 75.9 47 70.2
SGA_v2.0_scaffold50G18602 Striga asiatica HOM05D005223 ORTHO05D006449 1.6e-12 75.9 55 56.4
vmacro19239 Vaccinium macrocarpon HOM05D005223 ORTHO05D006449 1.6e-12 75.9 55 63.6
Actinidia19387 Actinidia chinensis HOM05D005223 ORTHO05D006449 2.1e-12 75.5 59 55.9
DCAR_021603 Daucus carota HOM05D005223 ORTHO05D006449 2.7e-12 75.1 63 52.4
Ciclev10018616m.g Citrus clementina HOM05D005223 ORTHO05D006449 3.6e-12 74.7 55 58.2
Duzib084G0239 Durio zibethinus HOM05D005223 ORTHO05D006449 3.6e-12 74.7 55 60.0
Hund18539 Selenicereus undatus HOM05D005223 ORTHO05D006449 4.7e-12 74.3 65 49.2
Ca_16089_v3 Cicer arietinum L. HOM05D005223 ORTHO05D006449 6.1e-12 73.9 58 48.3
Nn4g22461 Nelumbo nucifera HOM05D005223 ORTHO05D006449 6.1e-12 73.9 46 69.6
Peaxi162Scf00536g00422 Petunia axillaris HOM05D005223 ORTHO05D006449 6.1e-12 73.9 54 57.4
MSTRG.11293 Avicennia marina HOM05D005223 ORTHO05D006449 8.0e-12 73.6 53 52.8
SGA_v2.0_scaffold457G51932 Striga asiatica HOM05D005223 ORTHO05D006449 8.0e-12 73.6 55 54.5
CAN.G1110.40 Capsicum annuum HOM05D005223 ORTHO05D006449 1.4e-11 72.8 54 51.9
Solyc10g006780.4 Solanum lycopersicum HOM05D005223 ORTHO05D006449 1.4e-11 72.8 54 53.7
Sopen10g002700 Solanum pennellii HOM05D005223 ORTHO05D006449 1.4e-11 72.8 54 53.7
Phvul.009G168800 Phaseolus vulgaris HOM05D005223 ORTHO05D006449 1.8e-11 72.4 63 46.0
EL10Ac7g18074 Beta vulgaris HOM05D005223 ORTHO05D006449 3.0e-11 71.6 57 50.9
Glyma.06G172900 Glycine max HOM05D005223 ORTHO05D006449 3.0e-11 71.6 59 45.8
AUR62025728 Chenopodium quinoa HOM05D005223 ORTHO05D006449 4.0e-11 71.2 65 46.2
Lalb_Chr08g0236961 Lupinus albus HOM05D005223 ORTHO05D006449 4.0e-11 71.2 59 50.8
PGR083G1937 Punica granatum HOM05D005223 ORTHO05D006449 5.2e-11 70.9 54 53.7
ATR0824G104 Amborella trichopoda HOM05D005223 ORTHO05D006449 6.7e-11 70.5 55 56.4
arahy.Tifrunner.gnm1.ann1.9N92ER Arachis hypogaea HOM05D005223 ORTHO05D006449 6.7e-11 70.5 57 52.6
PGSC0003DMG400025026 Solanum tuberosum HOM05D005223 ORTHO05D006449 6.7e-11 70.5 54 51.9
arahy.Tifrunner.gnm1.ann1.D4E4RT Arachis hypogaea HOM05D005223 ORTHO05D006449 8.8e-11 70.1 57 54.4
Nitab4.5_0000955g0070 Nicotiana tabacum HOM05D005223 ORTHO05D006449 8.8e-11 70.1 54 55.6
AUR62001278 Chenopodium quinoa HOM05D005223 ORTHO05D006449 1.1e-10 69.7 65 46.2
Zm00001eb246300 Zea mays HOM05D005223 ORTHO05D006449 1.5e-10 69.3 57 45.6
BraA06t25704Z Brassica rapa HOM05D005223 ORTHO05D006449 2.6e-10 68.6 69 47.8
Nitab4.5_0002775g0020 Nicotiana tabacum HOM05D005223 ORTHO05D006449 2.6e-10 68.6 54 53.7
TWI14G1297 Tripterygium wilfordii HOM05D005223 ORTHO05D006449 5.7e-10 67.4 59 54.2
BcaB02g10650 Brassica carinata HOM05D005223 ORTHO05D006449 7.5e-10 67.0 68 44.1
VMungo1309G0017 Vigna mungo HOM05D005223 ORTHO05D006449 7.5e-10 67.0 59 45.8
Os02g0598800 Oryza sativa ssp. japonica HOM05D005223 ORTHO05D006449 1.3e-09 66.2 50 52.0
AL5G27880 Arabidopsis lyrata HOM05D005223 ORTHO05D006449 1.7e-09 65.9 60 46.7
A06p27680 Brassica napus HOM05D005223 ORTHO05D006449 1.7e-09 65.9 59 49.2
Carub.0005s1465 Capsella rubella HOM05D005223 ORTHO05D006449 1.7e-09 65.9 60 45.0
Lsat_1_v5_gn_0_22080 Lactuca sativa HOM05D005223 ORTHO05D006449 1.7e-09 65.9 44 56.8
CDE02G2587 Ceratophyllum demersum HOM05D005223 ORTHO05D006449 2.2e-09 65.5 60 46.7
BcaC01g02344 Brassica carinata HOM05D005223 ORTHO05D006449 3.7e-09 64.7 59 50.8
C03p66340 Brassica napus HOM05D005223 ORTHO05D006449 3.7e-09 64.7 59 50.8
BolC3t18905H Brassica oleracea HOM05D005223 ORTHO05D006449 3.7e-09 64.7 59 50.8
Thhalv10010098m.g Eutrema salsugineum HOM05D005223 ORTHO05D006449 3.7e-09 64.7 68 41.2
Sp5g13560 Schrenkiella parvula HOM05D005223 ORTHO05D006449 3.7e-09 64.7 68 42.6
AT3G48470 Arabidopsis thaliana HOM05D005223 ORTHO05D006449 4.8e-09 64.3 54 48.1
THA.LOC104818196 Tarenaya hassleriana HOM05D005223 ORTHO05D006449 1.8e-08 62.4 54 48.1
Actinidia25613 Actinidia chinensis HOM05D005223 ORTHO05D006449 2.4e-08 62.0 37 73.0
PSO063G1058 Papaver somniferum HOM05D005223 ORTHO05D006449 4.1e-08 61.2 50 54.0
SEGI_05777 Sequoiadendron giganteum HOM05D005223 ORTHO05D006449 4.1e-08 61.2 74 41.9
CARHR157230 Cardamine hirsuta HOM05D005223 ORTHO05D006449 7.0e-08 60.5 58 43.1
Aa31LG4G17050 Aethionema arabicum HOM05D005223 ORTHO05D006449 9.1e-08 60.1 58 41.4


User provided reference genes

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