Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0353171 Rosa chinensis HOM05D004274 ORTHO05D004980 3.5e-46 188.0 98 100.0
Prupe.6G037600 Prunus persica HOM05D004274 ORTHO05D004980 2.9e-16 88.6 63 76.2
FvH4_3g41190 Fragaria vesca HOM05D004274 ORTHO05D004980 7.2e-15 84.0 124 46.8
FAN21G2911 Fragaria x ananassa HOM05D004274 ORTHO05D004980 2.1e-14 82.4 94 54.3
RcHm_v2.0_Chr5g0074041 Rosa chinensis HOM05D004274 ORTHO05D004980 2.1e-14 82.4 80 61.2
FAN16G2313 Fragaria x ananassa HOM05D004274 ORTHO05D004980 3.0e-13 78.6 104 49.0
FvH4_3g41230 Fragaria vesca HOM05D004274 ORTHO05D004980 6.8e-13 77.4 87 52.9
FAN11G1599 Fragaria x ananassa HOM05D004274 ORTHO05D004980 8.8e-13 77.0 91 51.6
SGA_v2.0_scaffold8G04481 Striga asiatica HOM05D004274 ORTHO05D004980 1.3e-11 73.2 72 56.9
Ah.01g002020 Amaranthus hybridus HOM05D004274 ORTHO05D004980 6.3e-11 70.9 80 51.2
Aqoxy2G00658 Aquilegia oxysepala HOM05D004274 ORTHO05D004980 6.3e-11 70.9 71 54.9
CSS0034718 Camellia sinensis var. sinensis HOM05D004274 ORTHO05D004980 1.8e-10 69.3 78 51.3
Sed0009740 Sechium edule HOM05D004274 ORTHO05D004980 1.8e-10 69.3 80 47.5
Haze_24498 Corylus avellana HOM05D004274 ORTHO05D004980 4.1e-10 68.2 80 51.2
RcHm_v2.0_Chr2g0136141 Rosa chinensis HOM05D004274 ORTHO05D004980 4.1e-10 68.2 36 94.4
TWI32G0546 Tripterygium wilfordii HOM05D004274 ORTHO05D004980 4.1e-10 68.2 63 55.6
Lj6g0024729 Lotus japonicus HOM05D004274 ORTHO05D004980 5.4e-10 67.8 80 50.0
Gorai.011G165300 Gossypium raimondii HOM05D004274 ORTHO05D004980 1.2e-09 66.6 76 48.7
MD11G1049100 Malus domestica HOM05D004274 ORTHO05D004980 1.6e-09 66.2 98 43.9
Glyma.18G049100 Glycine max HOM05D004274 ORTHO05D004980 2.0e-09 65.9 90 44.4
Nitab4.5_0000539g0100 Nicotiana tabacum HOM05D004274 ORTHO05D004980 2.0e-09 65.9 91 42.9
Nitab4.5_0002399g0100 Nicotiana tabacum HOM05D004274 ORTHO05D004980 2.0e-09 65.9 91 42.9
Oeu020453.2 Olea europaea HOM05D004274 ORTHO05D004980 3.5e-09 65.1 106 41.5
RcHm_v2.0_Chr4g0402251 Rosa chinensis HOM05D005483 ORTHO05D006924 3.5e-09 65.1 66 54.5
Actinidia23822 Actinidia chinensis HOM05D004274 ORTHO05D004980 5.9e-09 64.3 70 52.9
Peaxi162Scf00293g00719 Petunia axillaris HOM05D004274 ORTHO05D004980 5.9e-09 64.3 87 43.7
CANSAT54G0105 Cannabis sativa HOM05D004274 ORTHO05D004980 7.7e-09 63.9 90 41.1
Manes.02G210080 Manihot esculenta HOM05D004274 ORTHO05D004980 7.7e-09 63.9 90 42.2
CiPaw.14G047000 Carya illinoinensis HOM05D004274 ORTHO05D004980 1.0e-08 63.5 59 57.6
Medtr3g062940 Medicago truncatula HOM05D004274 ORTHO05D004980 1.0e-08 63.5 94 41.5
RcHm_v2.0_Chr5g0074021 Rosa chinensis HOM05D004274 ORTHO05D004980 1.3e-08 63.2 35 85.7
THA.LOC104823773 Tarenaya hassleriana HOM05D004274 ORTHO05D004980 1.3e-08 63.2 85 44.7
Cpa.g.sc84.38 Carica papaya HOM05D004274 ORTHO05D004980 1.7e-08 62.8 76 43.4
Gohir.D10G148100 Gossypium hirsutum HOM05D004274 ORTHO05D004980 1.7e-08 62.8 86 43.0
Carub.0008s1878 Capsella rubella HOM05D004274 ORTHO05D004980 2.2e-08 62.4 86 44.2
Gohir.A10G118575 Gossypium hirsutum HOM05D004274 ORTHO05D004980 2.2e-08 62.4 86 43.0
Lsat_1_v5_gn_9_15480 Lactuca sativa HOM05D004274 ORTHO05D004980 2.2e-08 62.4 90 41.1
PGSC0003DMG400015127 Solanum tuberosum HOM05D004274 ORTHO05D004980 2.2e-08 62.4 90 42.2
Ca_15091_v3 Cicer arietinum L. HOM05D004274 ORTHO05D004980 2.9e-08 62.0 97 41.2
ECA247G3741 Erigeron canadensis HOM05D004274 ORTHO05D004980 3.8e-08 61.6 89 41.6
Sp6g19900 Schrenkiella parvula HOM05D004274 ORTHO05D004980 3.8e-08 61.6 90 41.1
BcaC04g19900 Brassica carinata HOM05D004274 ORTHO05D004980 5.0e-08 61.2 86 44.2
A10p15980 Brassica napus HOM05D004274 ORTHO05D004980 5.0e-08 61.2 86 44.2
C09p50090 Brassica napus HOM05D004274 ORTHO05D004980 5.0e-08 61.2 86 44.2
BolC9t57861H Brassica oleracea HOM05D004274 ORTHO05D004980 5.0e-08 61.2 86 44.2
BraA10t43627Z Brassica rapa HOM05D004274 ORTHO05D004980 5.0e-08 61.2 86 44.2
AUR62017620 Chenopodium quinoa HOM05D004274 ORTHO05D004980 5.0e-08 61.2 101 39.6
Thhalv10014808m.g Eutrema salsugineum HOM05D004274 ORTHO05D004980 5.0e-08 61.2 86 43.0
Hma1.2p1_0161F.1_g071960 Hydrangea macrophylla HOM05D004274 ORTHO05D004980 5.0e-08 61.2 90 45.6
HanXRQChr13g0391791 Helianthus annuus HOM05D004274 ORTHO05D004980 6.5e-08 60.8 98 38.8
Nn4g26698 Nelumbo nucifera HOM05D004274 ORTHO05D004980 6.5e-08 60.8 87 41.4
AT5G58240 Arabidopsis thaliana HOM05D004274 ORTHO05D004980 8.5e-08 60.5 86 43.0
Duzib168G2323 Durio zibethinus HOM05D004274 ORTHO05D004980 8.5e-08 60.5 90 41.1
AUR62015168 Chenopodium quinoa HOM05D004274 ORTHO05D004980 1.1e-07 60.1 104 38.5
Thecc.09G366500 Theobroma cacao HOM05D004274 ORTHO05D004980 1.1e-07 60.1 90 41.1
BcaB01g04543 Brassica carinata HOM05D004274 ORTHO05D004980 1.5e-07 59.7 86 43.0
Ciclev10006524m.g Citrus clementina HOM05D004274 ORTHO05D004980 1.5e-07 59.7 80 42.5
MBI03_g31633_MAGBIO Magnolia biondii HOM05D004274 ORTHO05D004980 1.5e-07 59.7 80 45.0
Lalb_Chr15g0085561 Lupinus albus HOM05D004274 ORTHO05D004980 1.9e-07 59.3 98 37.8
Psat5g146360 Pisum sativum HOM05D004274 ORTHO05D004980 3.2e-07 58.5 108 37.0
Eucgr.D01050 Eucalyptus grandis HOM05D004274 ORTHO05D004980 4.2e-07 58.2 80 43.8
Cc01_g15600 Coffea canephora HOM05D004274 ORTHO05D004980 5.5e-07 57.8 112 34.8
Glyma.11G201800 Glycine max HOM05D004274 ORTHO05D004980 7.2e-07 57.4 80 42.5
Lsat_1_v5_gn_8_98760 Lactuca sativa HOM05D004274 ORTHO05D004980 7.2e-07 57.4 75 41.3
Oeu023904.1 Olea europaea HOM05D004274 ORTHO05D004980 7.2e-07 57.4 109 37.6
AL8G34340 Arabidopsis lyrata HOM05D004274 ORTHO05D004980 9.4e-07 57.0 95 38.9
Migut.N00703 Erythranthe guttata HOM05D004274 ORTHO05D004980 1.2e-06 56.6 100 37.0
Lj6g0019258 Lotus japonicus HOM05D004274 ORTHO05D004980 1.2e-06 56.6 80 42.5
Phvul.006G082500 Phaseolus vulgaris HOM05D004274 ORTHO05D004980 1.2e-06 56.6 75 42.7
TPR.G13822 Trifolium pratense HOM05D004274 ORTHO05D004980 1.2e-06 56.6 109 35.8
Lj2C1107G8 Lonicera japonica HOM05D004274 ORTHO05D004980 1.6e-06 56.2 100 37.0
Os11g0120600 Oryza sativa ssp. japonica HOM05D004274 ORTHO05D004980 1.6e-06 56.2 86 43.0
PGR083G2809 Punica granatum HOM05D004274 ORTHO05D004980 2.1e-06 55.8 86 39.5
SalBow2G3254 Salvia bowleyana HOM05D004274 ORTHO05D004980 2.1e-06 55.8 71 45.1
VMungo0540G0713 Vigna mungo HOM05D004274 ORTHO05D004980 2.1e-06 55.8 115 34.8
Aa31LG11G30 Aethionema arabicum HOM05D004274 ORTHO05D004980 2.7e-06 55.5 106 36.8
Zm00001eb265500 Zea mays HOM05D004274 ORTHO05D004980 2.7e-06 55.5 70 44.3
GSVIVG01024520001 Vitis vinifera HOM05D004274 ORTHO05D004980 4.7e-06 54.7 112 35.7


User provided reference genes

Program Settings