Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0353141 Rosa chinensis HOM05D005332 ORTHO05D006861 9.4e-139 496.9 257 100.0
FvH4_7g13560 Fragaria vesca HOM05D005332 ORTHO05D006861 1.6e-125 453.0 244 96.3
FAN01G1890 Fragaria x ananassa HOM05D005332 ORTHO05D006861 2.0e-125 452.6 244 95.9
FAN06G0948 Fragaria x ananassa HOM05D005332 ORTHO05D006861 2.0e-125 452.6 244 95.9
RcHm_v2.0_Chr1g0353111 Rosa chinensis HOM05D005332 ORTHO05D006861 2.0e-125 452.6 244 96.3
FAN06G1647 Fragaria x ananassa HOM05D005332 ORTHO05D006861 2.6e-125 452.2 244 95.5
RcHm_v2.0_Chr1g0353281 Rosa chinensis HOM05D005332 ORTHO05D006861 4.5e-125 451.4 244 96.3
FAN03G0731 Fragaria x ananassa HOM05D005332 ORTHO05D006861 7.7e-125 450.7 244 95.5
FAN10G1762 Fragaria x ananassa HOM05D005332 ORTHO05D006861 3.8e-124 448.4 244 95.1
RcHm_v2.0_Chr0c39g0503341 Rosa chinensis HOM05D005332 ORTHO05D006861 8.8e-121 437.2 246 93.5
RcHm_v2.0_Chr1g0353331 Rosa chinensis HOM05D005332 ORTHO05D006861 2.0e-117 426.0 236 94.9
MD07G1128800 Malus domestica HOM05D005332 ORTHO05D006861 2.1e-114 416.0 242 88.0
RcHm_v2.0_Chr0c39g0503281 Rosa chinensis HOM05D005332 ORTHO05D006861 1.2e-112 410.2 257 87.5
Prupe.2G159800 Prunus persica HOM05D005332 ORTHO05D006861 2.0e-112 409.5 241 87.1
RcHm_v2.0_Chr1g0353241 Rosa chinensis HOM05D005332 ORTHO05D006861 1.8e-110 402.9 276 81.2
CANSAT56G3547 Cannabis sativa HOM05D005332 ORTHO05D006861 3.8e-108 395.2 241 83.4
Haze_15198 Corylus avellana HOM05D005332 ORTHO05D006861 1.6e-106 389.8 241 82.2
Manes.01G260300 Manihot esculenta HOM05D005332 ORTHO05D006861 1.0e-105 387.1 242 81.8
Rhsim07G0018900 Rhododendron simsii HOM05D005332 ORTHO05D006861 7.5e-104 380.9 241 80.5
Ciclev10021196m.g Citrus clementina HOM05D005332 ORTHO05D006861 1.7e-103 379.8 241 79.7
Thecc.01G365300 Theobroma cacao HOM05D005332 ORTHO05D006861 2.8e-103 379.0 241 80.5
RcHm_v2.0_Chr0c39g0503211 Rosa chinensis HOM05D005332 ORTHO05D006861 2.4e-102 375.9 257 81.3
vmacro13319 Vaccinium macrocarpon HOM05D005332 ORTHO05D006861 7.0e-102 374.4 241 78.4
CSS0028869 Camellia sinensis var. sinensis HOM05D005332 ORTHO05D006861 1.2e-101 373.6 241 78.8
Actinidia09995 Actinidia chinensis HOM05D000602 ORTHO05D002573 1.6e-101 373.2 241 78.8
TWI59G1218 Tripterygium wilfordii HOM05D005332 ORTHO05D006861 2.7e-101 372.5 241 79.7
CSS0045846 Camellia sinensis var. sinensis HOM05D005332 ORTHO05D006861 3.5e-101 372.1 241 78.4
Duzib138G1089 Durio zibethinus HOM05D005332 ORTHO05D006861 3.5e-101 372.1 241 78.8
Sabra14G0057900 Salix brachista HOM05D005332 ORTHO05D006861 3.5e-101 372.1 242 80.2
Eucgr.E00187 Eucalyptus grandis HOM05D005332 ORTHO05D006861 4.5e-101 371.7 242 78.1
Sed0022570 Sechium edule HOM05D005332 ORTHO05D006861 7.7e-101 370.9 241 76.3
TAR374G0257 Trochodendron aralioides HOM05D005332 ORTHO05D006861 7.7e-101 370.9 243 79.0
Potri.014G079700 Populus trichocarpa HOM05D005332 ORTHO05D006861 1.0e-100 370.5 242 79.8
CiPaw.01G056200 Carya illinoinensis HOM05D005332 ORTHO05D006861 1.3e-100 370.2 241 78.8
Gohir.D11G091000 Gossypium hirsutum HOM05D005332 ORTHO05D006861 1.3e-100 370.2 241 78.8
Cpa.g.sc704.3 Carica papaya HOM05D005332 ORTHO05D006861 1.7e-100 369.8 243 77.8
GSVIVG01026821001 Vitis vinifera HOM05D005332 ORTHO05D006861 1.7e-100 369.8 242 78.5
Gorai.007G097000 Gossypium raimondii HOM05D005332 ORTHO05D006861 3.8e-100 368.6 241 78.4
Gohir.A11G082100 Gossypium hirsutum HOM05D005332 ORTHO05D006861 1.9e-99 366.3 241 78.4
QL08p049836 Quercus lobata HOM05D005332 ORTHO05D006861 1.9e-99 366.3 277 71.1
Lj3g0013979 Lotus japonicus HOM05D005332 ORTHO05D006861 5.6e-99 364.8 241 75.5
Aqoxy5G03955 Aquilegia oxysepala HOM05D005332 ORTHO05D006861 9.5e-99 364.0 243 74.9
Cc02_g37460 Coffea canephora HOM05D005332 ORTHO05D006861 9.5e-99 364.0 242 75.2
Lsat_1_v5_gn_3_136741 Lactuca sativa HOM05D005332 ORTHO05D006861 9.5e-99 364.0 242 74.8
Lj9A579T30 Lonicera japonica HOM05D005332 ORTHO05D006861 1.6e-98 363.2 241 77.2
Lalb_Chr04g0256681 Lupinus albus HOM05D005332 ORTHO05D006861 1.6e-98 363.2 241 75.1
HPP92_025722 Vanilla planifolia HOM05D005332 ORTHO05D006861 1.6e-98 363.2 242 74.4
PGSC0003DMG402000019 Solanum tuberosum HOM05D005332 ORTHO05D006861 2.1e-98 362.8 242 75.2
Sopen01g037990 Solanum pennellii HOM05D005332 ORTHO05D006861 2.8e-98 362.5 242 75.2
TPR.G9802 Trifolium pratense HOM05D005332 ORTHO05D006861 2.8e-98 362.5 241 74.3
Glyma.07G075200 Glycine max HOM05D005332 ORTHO05D006861 4.7e-98 361.7 241 75.9
Nn6g33539 Nelumbo nucifera HOM05D005332 ORTHO05D006861 4.7e-98 361.7 241 75.1
Hund27309 Selenicereus undatus HOM05D005332 ORTHO05D006861 8.0e-98 360.9 241 74.3
CsaV3_6G005760 Cucumis sativus L. HOM05D005332 ORTHO05D006861 1.0e-97 360.5 241 74.3
CAN.G78.17 Capsicum annuum HOM05D005332 ORTHO05D006861 1.8e-97 359.8 242 74.4
PSO782G1310 Papaver somniferum HOM05D005332 ORTHO05D006861 1.8e-97 359.8 242 73.6
Phvul.010G093900 Phaseolus vulgaris HOM05D005332 ORTHO05D006861 1.8e-97 359.8 240 76.7
MELO3C022535.2 Cucumis melo HOM05D005332 ORTHO05D006861 2.3e-97 359.4 241 74.7
Solyc01g094190.3 Solanum lycopersicum HOM05D005332 ORTHO05D006861 5.2e-97 358.2 242 74.4
Peaxi162Scf00397g00521 Petunia axillaris HOM05D005332 ORTHO05D006861 6.8e-97 357.8 242 74.4
Ah.05g176380 Amaranthus hybridus HOM05D005332 ORTHO05D006861 8.9e-97 357.5 243 73.7
arahy.Tifrunner.gnm1.ann1.CH4HI7 Arachis hypogaea HOM05D005332 ORTHO05D006861 1.2e-96 357.1 242 74.0
A02p24170 Brassica napus HOM05D005332 ORTHO05D006861 1.5e-96 356.7 243 73.3
BraA02t07408Z Brassica rapa HOM05D005332 ORTHO05D006861 1.5e-96 356.7 243 73.3
HanXRQChr03g0093511 Helianthus annuus HOM05D005332 ORTHO05D006861 1.5e-96 356.7 242 74.4
Os02g0826200 Oryza sativa ssp. japonica HOM05D005332 ORTHO05D006861 2.0e-96 356.3 241 73.4
SalBow5G4657 Salvia bowleyana HOM05D005332 ORTHO05D006861 2.0e-96 356.3 242 73.6
VMungo0331G0206 Vigna mungo HOM05D005332 ORTHO05D006861 2.0e-96 356.3 236 75.4
arahy.Tifrunner.gnm1.ann1.W4LYDN Arachis hypogaea HOM05D005332 ORTHO05D006861 2.6e-96 355.9 242 74.0
C02p38040 Brassica napus HOM05D005332 ORTHO05D006861 3.4e-96 355.5 243 72.4
BolC2t09820H Brassica oleracea HOM05D005332 ORTHO05D006861 3.4e-96 355.5 243 72.4
ClCG06G000030 Citrullus lanatus HOM05D005332 ORTHO05D006861 3.4e-96 355.5 267 69.7
THA.LOC104801453 Tarenaya hassleriana HOM05D005332 ORTHO05D006861 3.4e-96 355.5 242 72.3
EL10Ac1g00521 Beta vulgaris HOM05D005332 ORTHO05D006861 4.4e-96 355.1 241 73.0
BcaB01g02194 Brassica carinata HOM05D005332 ORTHO05D006861 4.4e-96 355.1 244 73.8
BcaC03g16043 Brassica carinata HOM05D005332 ORTHO05D006861 4.4e-96 355.1 243 73.3
SalBow5G2488 Salvia bowleyana HOM05D005332 ORTHO05D006861 7.5e-96 354.4 242 73.1
AT4G00560 Arabidopsis thaliana HOM05D005332 ORTHO05D006861 9.8e-96 354.0 244 70.9
AL6G52870 Arabidopsis lyrata HOM05D005332 ORTHO05D006861 1.3e-95 353.6 243 72.8
ECA240G0419 Erigeron canadensis HOM05D005332 ORTHO05D006861 1.3e-95 353.6 242 72.3
Thhalv10028798m.g Eutrema salsugineum HOM05D005332 ORTHO05D006861 1.7e-95 353.2 243 72.0
Nitab4.5_0001251g0070 Nicotiana tabacum HOM05D005332 ORTHO05D006861 2.2e-95 352.8 242 73.1
SGA_v2.0_scaffold43G16446 Striga asiatica HOM05D005332 ORTHO05D006861 6.4e-95 351.3 252 71.0
Oeu014686.1 Olea europaea HOM05D005332 ORTHO05D006861 8.3e-95 350.9 248 72.2
Sp6g00600 Schrenkiella parvula HOM05D005332 ORTHO05D006861 8.3e-95 350.9 245 72.7
Aa31LG5G430 Aethionema arabicum HOM05D005332 ORTHO05D006861 1.8e-94 349.7 242 71.1
MSTRG.28212 Avicennia marina HOM05D005332 ORTHO05D006861 1.8e-94 349.7 242 72.3
Ca_18844_v3 Cicer arietinum L. HOM05D005332 ORTHO05D006861 1.8e-94 349.7 242 74.0
Zm00001eb259270 Zea mays HOM05D005332 ORTHO05D006861 1.8e-94 349.7 243 73.7
CARHR248730 Cardamine hirsuta HOM05D005332 ORTHO05D006861 5.4e-94 348.2 242 71.5
Carub.0006s3668 Capsella rubella HOM05D005332 ORTHO05D006861 1.6e-93 346.7 242 72.7
Medtr8g032270 Medicago truncatula HOM05D005332 ORTHO05D006861 2.7e-93 345.9 241 71.4
Migut.O00555 Erythranthe guttata HOM05D005332 ORTHO05D006861 1.3e-92 343.6 241 72.2
PSO478G0627 Papaver somniferum HOM05D005332 ORTHO05D006861 3.0e-92 342.4 262 67.6
COL.COLO4_12599 Corchorus olitorius HOM05D005332 ORTHO05D006861 1.5e-91 340.1 241 73.9
ATR0680G024 Amborella trichopoda HOM05D005332 ORTHO05D006861 4.7e-90 335.1 241 68.0
AUR62004310 Chenopodium quinoa HOM05D005332 ORTHO05D006861 8.0e-90 334.3 241 68.0
Nitab4.5_0006669g0040 Nicotiana tabacum HOM05D005332 ORTHO05D006861 1.2e-88 330.5 296 59.8
DCAR_006914 Daucus carota HOM05D005332 ORTHO05D006861 5.8e-88 328.2 241 66.8
MBI18_g09781_MAGBIO Magnolia biondii HOM05D005332 ORTHO05D006861 1.7e-87 326.6 241 69.7
Dinv43779 Davidia involucrata HOM05D005332 ORTHO05D006861 1.6e-85 320.1 206 79.6
Atru.chr5.441 Acer truncatum HOM05D005332 ORTHO05D006861 4.6e-85 318.5 205 77.1
CDE09G0818 Ceratophyllum demersum HOM05D005332 ORTHO05D006861 1.2e-82 310.5 224 69.6
SEGI_02313 Sequoiadendron giganteum HOM05D005332 ORTHO05D006861 1.4e-81 307.0 242 64.5
PGR042G0753 Punica granatum HOM05D005332 ORTHO05D006861 1.3e-79 300.4 204 73.0
Migut.N01426 Erythranthe guttata HOM05D005332 ORTHO05D006861 8.3e-79 297.7 205 73.2
unitig_0.g1508 Utricularia gibba HOM05D005332 ORTHO05D006861 4.6e-77 292.0 244 62.3
Mapoly0113s0013 Marchantia polymorpha HOM05D005332 ORTHO05D006861 1.4e-73 280.4 243 58.4
Pp3c6_20490 Physcomitrium patens HOM05D005332 ORTHO05D006861 1.6e-69 266.9 243 54.7
MD01G1052200 Malus domestica HOM05D005332 ORTHO05D006861 1.1e-67 260.8 180 75.6
SMO137G0161 Selaginella moellendorffii HOM05D005332 ORTHO05D006861 1.4e-65 253.8 243 54.7
Sc23g0003120 Simmondsia chinensis HOM05D005332 ORTHO05D006861 8.9e-65 251.1 159 77.4
AUR62022761 Chenopodium quinoa HOM05D005332 ORTHO05D006861 2.4e-57 226.5 159 68.6
Glyma.03G015066 Glycine max HOM05D005332 ORTHO05D006861 4.8e-50 202.2 131 75.6
AagrBONN_evm.TU.Sc2ySwM_117.1953 Anthoceros agrestis HOM05D005332 ORTHO05D006861 1.2e-48 197.6 235 44.7
RcHm_v2.0_Chr1g0353211 Rosa chinensis HOM05D005332 ORTHO05D006861 3.2e-46 189.5 110 90.0
PRCOL_00000453 Prasinoderma coloniale HOM05D005332 ORTHO05D006861 4.3e-43 179.1 240 46.2
MCO04G198 Micromonas commoda HOM05D005332 ORTHO05D006861 1.1e-41 174.5 248 45.6
Psat4g153040 Pisum sativum HOM05D005332 ORTHO05D006861 4.5e-40 169.1 119 69.7
CAN.G960.12 Capsicum annuum HOM05D005332 ORTHO05D006861 2.1e-37 160.2 194 52.1
QL02p088489 Quercus lobata HOM05D005332 ORTHO05D006861 1.3e-36 157.5 111 72.1
QL03p011361 Quercus lobata HOM05D005332 ORTHO05D006861 1.3e-36 157.5 111 72.1
QL07p038896 Quercus lobata HOM05D005332 ORTHO05D006861 1.3e-36 157.5 111 72.1
MBI18_g10614_MAGBIO Magnolia biondii HOM05D005332 ORTHO05D006861 4.3e-35 152.5 118 66.9
QL02p088470 Quercus lobata HOM05D005332 ORTHO05D006861 9.7e-35 151.4 105 74.3
SEGI_30707 Sequoiadendron giganteum HOM05D005332 ORTHO05D006861 1.3e-34 151.0 123 60.2
RcHm_v2.0_Chr1g0353261 Rosa chinensis HOM05D005277 ORTHO05D006319 1.3e-31 141.0 84 89.3
Cre17.g718250 Chlamydomonas reinhardtii HOM05D005332 ORTHO05D006861 4.6e-29 132.5 243 39.5
arahy.Tifrunner.gnm1.ann1.F84KN2 Arachis hypogaea HOM05D005332 ORTHO05D006861 8.2e-26 121.7 95 63.2
arahy.Tifrunner.gnm1.ann1.FSVT9P Arachis hypogaea HOM05D005332 ORTHO05D006861 6.9e-25 118.6 90 62.2
Psat4g153000 Pisum sativum HOM05D005332 ORTHO05D006861 6.9e-25 118.6 76 78.9
arahy.Tifrunner.gnm1.ann1.6Z7PRK Arachis hypogaea HOM05D005332 ORTHO05D006861 2.3e-12 77.0 57 61.4
MD01G1052100 Malus domestica HOM05D005332 ORTHO05D006861 9.7e-11 71.6 46 82.6
RcHm_v2.0_Chr3g0477641 Rosa chinensis HOM05D005332 ORTHO05D006861 3.1e-09 66.6 34 97.1
arahy.Tifrunner.gnm1.ann1.G2MMRU Arachis hypogaea HOM05D005332 ORTHO05D006861 2.5e-06 57.0 44 68.2
arahy.Tifrunner.gnm1.ann1.SQV5XE Arachis hypogaea HOM05D005332 ORTHO05D004201 9.4e-06 55.1 57 54.4


User provided reference genes

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