Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0353111 Rosa chinensis HOM05D005332 ORTHO05D006861 2.2e-177 625.5 317 100.0
FAN06G0948 Fragaria x ananassa HOM05D005332 ORTHO05D006861 3.2e-173 611.7 317 96.5
FAN06G1647 Fragaria x ananassa HOM05D005332 ORTHO05D006861 4.2e-173 611.3 317 96.2
FAN01G1890 Fragaria x ananassa HOM05D005332 ORTHO05D006861 5.5e-173 610.9 317 96.5
RcHm_v2.0_Chr0c39g0503341 Rosa chinensis HOM05D005332 ORTHO05D006861 9.4e-173 610.1 319 97.8
FvH4_7g13560 Fragaria vesca HOM05D005332 ORTHO05D006861 1.6e-172 609.4 317 96.8
FAN03G0731 Fragaria x ananassa HOM05D005332 ORTHO05D006861 1.0e-171 606.7 317 95.9
FAN10G1762 Fragaria x ananassa HOM05D005332 ORTHO05D006861 4.3e-170 601.3 317 95.6
Prupe.2G159800 Prunus persica HOM05D005332 ORTHO05D006861 1.3e-150 536.6 314 84.7
MD07G1128800 Malus domestica HOM05D005332 ORTHO05D006861 2.7e-148 528.9 319 83.4
RcHm_v2.0_Chr1g0353281 Rosa chinensis HOM05D005332 ORTHO05D006861 4.0e-139 498.4 263 96.2
Haze_15198 Corylus avellana HOM05D005332 ORTHO05D006861 1.3e-137 493.4 314 79.6
Rhsim07G0018900 Rhododendron simsii HOM05D005332 ORTHO05D006861 1.3e-137 493.4 311 78.1
vmacro13319 Vaccinium macrocarpon HOM05D005332 ORTHO05D006861 2.8e-137 492.3 314 76.4
CSS0028869 Camellia sinensis var. sinensis HOM05D005332 ORTHO05D006861 5.9e-135 484.6 320 75.9
Actinidia09995 Actinidia chinensis HOM05D000602 ORTHO05D002573 1.0e-134 483.8 314 75.5
CSS0045846 Camellia sinensis var. sinensis HOM05D005332 ORTHO05D006861 1.7e-134 483.0 320 75.6
Cpa.g.sc704.3 Carica papaya HOM05D005332 ORTHO05D006861 2.3e-134 482.6 316 75.6
Manes.01G260300 Manihot esculenta HOM05D005332 ORTHO05D006861 2.3e-134 482.6 317 77.9
CANSAT56G3547 Cannabis sativa HOM05D005332 ORTHO05D006861 2.5e-133 479.2 312 78.5
Cc02_g37460 Coffea canephora HOM05D005332 ORTHO05D006861 1.2e-132 476.9 314 73.9
TWI59G1218 Tripterygium wilfordii HOM05D005332 ORTHO05D006861 6.1e-132 474.6 312 76.6
GSVIVG01026821001 Vitis vinifera HOM05D005332 ORTHO05D006861 8.0e-132 474.2 315 76.5
Ciclev10021196m.g Citrus clementina HOM05D005332 ORTHO05D006861 2.3e-131 472.6 316 75.9
QL08p049836 Quercus lobata HOM05D005332 ORTHO05D006861 2.3e-131 472.6 350 70.9
Gohir.D11G091000 Gossypium hirsutum HOM05D005332 ORTHO05D006861 8.9e-131 470.7 315 76.2
Gorai.007G097000 Gossypium raimondii HOM05D005332 ORTHO05D006861 2.6e-130 469.2 315 75.9
PGSC0003DMG402000019 Solanum tuberosum HOM05D005332 ORTHO05D006861 4.4e-130 468.4 317 72.2
Thecc.01G365300 Theobroma cacao HOM05D005332 ORTHO05D006861 9.8e-130 467.2 315 75.6
Sopen01g037990 Solanum pennellii HOM05D005332 ORTHO05D006861 1.3e-129 466.8 317 71.9
Duzib138G1089 Durio zibethinus HOM05D005332 ORTHO05D006861 1.7e-129 466.5 315 74.9
Gohir.A11G082100 Gossypium hirsutum HOM05D005332 ORTHO05D006861 1.7e-129 466.5 315 75.9
Lsat_1_v5_gn_3_136741 Lactuca sativa HOM05D005332 ORTHO05D006861 8.3e-129 464.2 314 71.0
MSTRG.28212 Avicennia marina HOM05D005332 ORTHO05D006861 1.1e-128 463.8 316 71.8
Lalb_Chr04g0256681 Lupinus albus HOM05D005332 ORTHO05D006861 1.1e-128 463.8 315 72.1
Glyma.07G075200 Glycine max HOM05D005332 ORTHO05D006861 1.4e-128 463.4 318 72.6
Sed0022570 Sechium edule HOM05D005332 ORTHO05D006861 1.4e-128 463.4 312 73.1
TAR374G0257 Trochodendron aralioides HOM05D005332 ORTHO05D006861 1.4e-128 463.4 316 75.3
Solyc01g094190.3 Solanum lycopersicum HOM05D005332 ORTHO05D006861 1.8e-128 463.0 317 71.6
Peaxi162Scf00397g00521 Petunia axillaris HOM05D005332 ORTHO05D006861 5.4e-128 461.5 316 72.2
CAN.G78.17 Capsicum annuum HOM05D005332 ORTHO05D006861 7.0e-128 461.1 317 71.6
Oeu014686.1 Olea europaea HOM05D005332 ORTHO05D006861 7.0e-128 461.1 321 70.1
Hund27309 Selenicereus undatus HOM05D005332 ORTHO05D006861 1.6e-127 459.9 314 71.7
Lj9A579T30 Lonicera japonica HOM05D005332 ORTHO05D006861 2.0e-127 459.5 315 72.4
Nn6g33539 Nelumbo nucifera HOM05D005332 ORTHO05D006861 2.7e-127 459.1 314 73.6
Eucgr.E00187 Eucalyptus grandis HOM05D005332 ORTHO05D006861 4.6e-127 458.4 315 72.4
Sabra14G0057900 Salix brachista HOM05D005332 ORTHO05D006861 7.8e-127 457.6 316 74.1
Nitab4.5_0001251g0070 Nicotiana tabacum HOM05D005332 ORTHO05D006861 2.3e-126 456.1 317 71.3
Phvul.010G093900 Phaseolus vulgaris HOM05D005332 ORTHO05D006861 3.9e-126 455.3 318 71.7
Potri.014G079700 Populus trichocarpa HOM05D005332 ORTHO05D006861 3.9e-126 455.3 316 73.7
arahy.Tifrunner.gnm1.ann1.CH4HI7 Arachis hypogaea HOM05D005332 ORTHO05D006861 6.6e-126 454.5 323 69.3
Ah.05g176380 Amaranthus hybridus HOM05D005332 ORTHO05D006861 1.1e-125 453.8 317 70.0
RcHm_v2.0_Chr1g0353141 Rosa chinensis HOM05D005332 ORTHO05D006861 1.1e-125 453.8 244 96.3
CsaV3_6G005760 Cucumis sativus L. HOM05D005332 ORTHO05D006861 2.5e-125 452.6 314 70.7
HPP92_025722 Vanilla planifolia HOM05D005332 ORTHO05D006861 2.5e-125 452.6 312 69.6
arahy.Tifrunner.gnm1.ann1.W4LYDN Arachis hypogaea HOM05D005332 ORTHO05D006861 4.3e-125 451.8 323 69.0
EL10Ac1g00521 Beta vulgaris HOM05D005332 ORTHO05D006861 7.3e-125 451.1 311 70.1
THA.LOC104801453 Tarenaya hassleriana HOM05D005332 ORTHO05D006861 7.3e-125 451.1 315 68.9
Aqoxy5G03955 Aquilegia oxysepala HOM05D005332 ORTHO05D006861 1.6e-124 449.9 316 70.6
SGA_v2.0_scaffold43G16446 Striga asiatica HOM05D005332 ORTHO05D006861 3.6e-124 448.7 326 69.3
AL6G52870 Arabidopsis lyrata HOM05D005332 ORTHO05D006861 6.2e-124 448.0 316 70.3
Lj3g0013979 Lotus japonicus HOM05D005332 ORTHO05D006861 1.4e-123 446.8 318 69.5
SalBow5G4657 Salvia bowleyana HOM05D005332 ORTHO05D006861 3.1e-123 445.7 313 70.9
ECA240G0419 Erigeron canadensis HOM05D005332 ORTHO05D006861 4.0e-123 445.3 315 69.5
Sp6g00600 Schrenkiella parvula HOM05D005332 ORTHO05D006861 4.0e-123 445.3 318 70.1
Os02g0826200 Oryza sativa ssp. japonica HOM05D005332 ORTHO05D006861 5.2e-123 444.9 314 69.1
TPR.G9802 Trifolium pratense HOM05D005332 ORTHO05D006861 5.2e-123 444.9 318 68.2
MELO3C022535.2 Cucumis melo HOM05D005332 ORTHO05D006861 8.9e-123 444.1 314 69.7
HanXRQChr03g0093511 Helianthus annuus HOM05D005332 ORTHO05D006861 1.5e-122 443.4 312 70.5
Zm00001eb259270 Zea mays HOM05D005332 ORTHO05D006861 2.0e-122 443.0 314 70.7
VMungo0331G0206 Vigna mungo HOM05D005332 ORTHO05D006861 3.4e-122 442.2 314 69.7
ClCG06G000030 Citrullus lanatus HOM05D005332 ORTHO05D006861 5.8e-122 441.4 340 66.5
Thhalv10028798m.g Eutrema salsugineum HOM05D005332 ORTHO05D006861 1.3e-121 440.3 316 68.0
Nitab4.5_0006669g0040 Nicotiana tabacum HOM05D005332 ORTHO05D006861 2.2e-121 439.5 370 61.1
Migut.O00555 Erythranthe guttata HOM05D005332 ORTHO05D006861 3.7e-121 438.7 315 70.2
Medtr8g032270 Medicago truncatula HOM05D005332 ORTHO05D006861 6.4e-121 438.0 314 68.8
AT4G00560 Arabidopsis thaliana HOM05D005332 ORTHO05D006861 1.4e-120 436.8 315 68.9
A02p24170 Brassica napus HOM05D005332 ORTHO05D006861 1.4e-120 436.8 316 69.0
BraA02t07408Z Brassica rapa HOM05D005332 ORTHO05D006861 3.2e-120 435.6 316 68.7
Aa31LG5G430 Aethionema arabicum HOM05D005332 ORTHO05D006861 5.4e-120 434.9 315 67.3
COL.COLO4_12599 Corchorus olitorius HOM05D005332 ORTHO05D006861 7.0e-120 434.5 315 71.7
RcHm_v2.0_Chr1g0353331 Rosa chinensis HOM05D005332 ORTHO05D006861 7.0e-120 434.5 230 97.4
Carub.0006s3668 Capsella rubella HOM05D005332 ORTHO05D006861 2.0e-119 433.0 316 69.6
PSO782G1310 Papaver somniferum HOM05D005332 ORTHO05D006861 2.0e-119 433.0 315 67.9
BcaB01g02194 Brassica carinata HOM05D005332 ORTHO05D006861 2.3e-118 429.5 315 69.2
BcaC03g16043 Brassica carinata HOM05D005332 ORTHO05D006861 3.9e-118 428.7 316 67.7
C02p38040 Brassica napus HOM05D005332 ORTHO05D006861 6.6e-118 427.9 316 67.4
AUR62004310 Chenopodium quinoa HOM05D005332 ORTHO05D006861 5.6e-117 424.9 314 65.3
MBI18_g09781_MAGBIO Magnolia biondii HOM05D005332 ORTHO05D006861 1.6e-116 423.3 314 67.8
Atru.chr5.441 Acer truncatum HOM05D005332 ORTHO05D006861 1.4e-115 420.2 279 74.2
BolC2t09820H Brassica oleracea HOM05D005332 ORTHO05D006861 3.1e-115 419.1 328 64.9
Ca_18844_v3 Cicer arietinum L. HOM05D005332 ORTHO05D006861 8.9e-115 417.5 305 68.9
PSO478G0627 Papaver somniferum HOM05D005332 ORTHO05D006861 9.8e-114 414.1 335 63.3
SalBow5G2488 Salvia bowleyana HOM05D005332 ORTHO05D006861 8.3e-113 411.0 282 72.0
RcHm_v2.0_Chr1g0353241 Rosa chinensis HOM05D005332 ORTHO05D006861 7.1e-112 407.9 241 89.2
ATR0680G024 Amborella trichopoda HOM05D005332 ORTHO05D006861 3.5e-111 405.6 314 63.1
CDE09G0818 Ceratophyllum demersum HOM05D005332 ORTHO05D006861 3.0e-110 402.5 297 68.4
DCAR_006914 Daucus carota HOM05D005332 ORTHO05D006861 1.9e-109 399.8 314 63.4
Migut.N01426 Erythranthe guttata HOM05D005332 ORTHO05D006861 1.1e-107 394.0 279 70.6
PGR042G0753 Punica granatum HOM05D005332 ORTHO05D006861 9.2e-104 380.9 286 67.1
SEGI_02313 Sequoiadendron giganteum HOM05D005332 ORTHO05D006861 1.2e-103 380.6 316 61.1
CiPaw.01G056200 Carya illinoinensis HOM05D005332 ORTHO05D006861 6.6e-102 374.8 238 78.6
RcHm_v2.0_Chr0c39g0503211 Rosa chinensis HOM05D005332 ORTHO05D006861 2.8e-100 369.4 241 83.0
RcHm_v2.0_Chr0c39g0503281 Rosa chinensis HOM05D005332 ORTHO05D006861 1.8e-99 366.7 244 83.2
CARHR248730 Cardamine hirsuta HOM05D005332 ORTHO05D006861 1.4e-96 357.1 239 72.8
Sc23g0003120 Simmondsia chinensis HOM05D005332 ORTHO05D006861 1.1e-91 340.9 232 72.4
Pp3c6_20490 Physcomitrium patens HOM05D005332 ORTHO05D006861 2.2e-89 333.2 314 52.5
Mapoly0113s0013 Marchantia polymorpha HOM05D005332 ORTHO05D006861 1.9e-88 330.1 311 54.3
Dinv43779 Davidia involucrata HOM05D005332 ORTHO05D006861 4.6e-87 325.5 203 79.8
AUR62022761 Chenopodium quinoa HOM05D005332 ORTHO05D006861 5.8e-82 308.5 232 64.2
unitig_0.g1508 Utricularia gibba HOM05D005332 ORTHO05D006861 7.9e-79 298.1 241 62.7
SMO137G0161 Selaginella moellendorffii HOM05D005332 ORTHO05D006861 1.6e-76 290.4 312 50.0
Psat4g153040 Pisum sativum HOM05D005332 ORTHO05D006861 5.7e-69 265.4 189 67.7
MD01G1052200 Malus domestica HOM05D005332 ORTHO05D006861 1.3e-68 264.2 180 76.1
AagrBONN_evm.TU.Sc2ySwM_117.1953 Anthoceros agrestis HOM05D005332 ORTHO05D006861 1.4e-67 260.8 303 45.2
MBI18_g10614_MAGBIO Magnolia biondii HOM05D005332 ORTHO05D006861 8.5e-65 251.5 191 66.0
MCO04G198 Micromonas commoda HOM05D005332 ORTHO05D006861 1.8e-51 207.2 321 41.7
Glyma.03G015066 Glycine max HOM05D005332 ORTHO05D006861 5.9e-50 202.2 131 74.8
PRCOL_00000453 Prasinoderma coloniale HOM05D005332 ORTHO05D006861 1.0e-49 201.4 316 40.5
RcHm_v2.0_Chr1g0353211 Rosa chinensis HOM05D005332 ORTHO05D006861 1.1e-45 188.0 110 88.2
MD01G1052100 Malus domestica HOM05D005332 ORTHO05D006861 7.7e-42 175.3 127 71.7
CAN.G960.12 Capsicum annuum HOM05D005332 ORTHO05D006861 2.7e-39 166.8 123 69.9
Cre17.g718250 Chlamydomonas reinhardtii HOM05D005332 ORTHO05D006861 2.7e-39 166.8 317 38.2
RcHm_v2.0_Chr1g0353321 Rosa chinensis HOM05D005332 ORTHO05D006861 3.3e-37 159.8 76 97.4
QL02p088489 Quercus lobata HOM05D005332 ORTHO05D006861 1.4e-35 154.5 111 69.4
QL03p011361 Quercus lobata HOM05D005332 ORTHO05D006861 1.4e-35 154.5 111 69.4
QL07p038896 Quercus lobata HOM05D005332 ORTHO05D006861 1.4e-35 154.5 111 69.4
QL02p088470 Quercus lobata HOM05D005332 ORTHO05D006861 3.5e-34 149.8 105 72.4
SEGI_30707 Sequoiadendron giganteum HOM05D005332 ORTHO05D006861 2.9e-33 146.7 123 57.7
RcHm_v2.0_Chr1g0353261 Rosa chinensis HOM05D005277 ORTHO05D006319 4.7e-31 139.4 84 86.9
RcHm_v2.0_Chr0c39g0503291 Rosa chinensis HOM05D005332 ORTHO05D006861 2.0e-26 124.0 60 96.7
RcHm_v2.0_Chr1g0353131 Rosa chinensis HOM05D005332 ORTHO05D006861 2.0e-26 124.0 60 96.7
arahy.Tifrunner.gnm1.ann1.F84KN2 Arachis hypogaea HOM05D005332 ORTHO05D006861 3.5e-26 123.2 102 59.8
arahy.Tifrunner.gnm1.ann1.FSVT9P Arachis hypogaea HOM05D005332 ORTHO05D006861 1.7e-25 120.9 90 63.3
Psat4g153000 Pisum sativum HOM05D005332 ORTHO05D006861 2.5e-24 117.1 76 76.3
RcHm_v2.0_Chr3g0477641 Rosa chinensis HOM05D005332 ORTHO05D006861 5.2e-22 109.4 55 94.5
Glyma.03G015132 Glycine max HOM05D005332 ORTHO05D006861 1.7e-17 94.4 84 58.3
arahy.Tifrunner.gnm1.ann1.6Z7PRK Arachis hypogaea HOM05D005332 ORTHO05D006861 6.4e-12 75.9 57 59.6


User provided reference genes

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