Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0352641 Rosa chinensis HOM05D003871 ORTHO05D004621 1.8e-159 565.8 282 100.0
FAN01G1876 Fragaria x ananassa HOM05D003871 ORTHO05D004621 1.0e-146 523.5 283 93.3
FAN06G4052 Fragaria x ananassa HOM05D003871 ORTHO05D004621 1.0e-146 523.5 283 93.3
FAN03G3137 Fragaria x ananassa HOM05D003871 ORTHO05D004621 1.3e-146 523.1 283 92.9
FAN10G0206 Fragaria x ananassa HOM05D003871 ORTHO05D004621 3.9e-146 521.5 283 92.9
FAN10G4186 Fragaria x ananassa HOM05D003871 ORTHO05D004621 1.5e-145 519.6 283 92.9
FAN06G3893 Fragaria x ananassa HOM05D003871 ORTHO05D004621 2.5e-145 518.8 283 92.6
FvH4_7g13330 Fragaria vesca HOM05D003871 ORTHO05D004621 4.3e-145 518.1 282 92.9
Prupe.2G156700 Prunus persica HOM05D003871 ORTHO05D004621 8.1e-136 487.3 280 86.1
MD07G1127800 Malus domestica HOM05D003871 ORTHO05D004621 6.5e-133 477.6 280 83.6
CANSAT56G3752 Cannabis sativa HOM05D003871 ORTHO05D004621 4.3e-129 464.9 280 81.8
Lj3g0009639 Lotus japonicus HOM05D003871 ORTHO05D004621 1.3e-125 453.4 281 80.4
Sed0001471 Sechium edule HOM05D003871 ORTHO05D004621 3.8e-125 451.8 283 79.5
arahy.Tifrunner.gnm1.ann1.I68A9W Arachis hypogaea HOM05D003871 ORTHO05D004621 6.5e-125 451.1 286 80.8
arahy.Tifrunner.gnm1.ann1.WVA4TF Arachis hypogaea HOM05D003871 ORTHO05D004621 8.4e-125 450.7 286 80.8
Glyma.03G016800 Glycine max HOM05D003871 ORTHO05D004621 1.4e-124 449.9 282 79.8
ClCG05G001830 Citrullus lanatus HOM05D003871 ORTHO05D004621 2.5e-124 449.1 285 78.2
arahy.Tifrunner.gnm1.ann1.6U8ZH2 Arachis hypogaea HOM05D003871 ORTHO05D004621 3.2e-124 448.7 285 78.9
CsaV3_3G009220 Cucumis sativus L. HOM05D003871 ORTHO05D004621 3.2e-124 448.7 285 78.2
arahy.Tifrunner.gnm1.ann1.AB99XC Arachis hypogaea HOM05D003871 ORTHO05D004621 5.5e-124 448.0 285 78.9
MELO3C006142.2 Cucumis melo HOM05D003871 ORTHO05D004621 7.1e-124 447.6 285 77.9
Atru.chr5.417 Acer truncatum HOM05D003871 ORTHO05D004621 9.3e-124 447.2 281 80.8
Ca_23740_v3 Cicer arietinum L. HOM05D003871 ORTHO05D004621 9.3e-124 447.2 281 78.6
Dinv43765 Davidia involucrata HOM05D003871 ORTHO05D004621 7.9e-123 444.1 280 80.4
Glyma.07G077100 Glycine max HOM05D003871 ORTHO05D004621 1.3e-122 443.4 284 78.2
GSVIVG01027510001 Vitis vinifera HOM05D003871 ORTHO05D004621 1.3e-122 443.4 280 79.3
Lalb_Chr10g0097451 Lupinus albus HOM05D003871 ORTHO05D004621 3.9e-122 441.8 283 77.0
Psat4g151960 Pisum sativum HOM05D003871 ORTHO05D004621 8.7e-122 440.7 281 77.9
Manes.05G039500 Manihot esculenta HOM05D003871 ORTHO05D004621 1.5e-121 439.9 268 81.7
TPR.G17571 Trifolium pratense HOM05D003871 ORTHO05D004621 1.5e-121 439.9 281 77.6
Lalb_Chr17g0339991 Lupinus albus HOM05D003871 ORTHO05D004621 3.3e-121 438.7 282 77.3
TAR375G0585 Trochodendron aralioides HOM05D003871 ORTHO05D004621 3.3e-121 438.7 280 78.9
VMungo0331G1218 Vigna mungo HOM05D003871 ORTHO05D004621 5.7e-121 438.0 282 78.7
Sed0018711 Sechium edule HOM05D003871 ORTHO05D004621 7.4e-121 437.6 285 76.8
Hund16957 Selenicereus undatus HOM05D003871 ORTHO05D004621 1.6e-120 436.4 280 79.3
TAR374G1595 Trochodendron aralioides HOM05D003871 ORTHO05D004621 1.6e-120 436.4 280 78.2
COL.COLO4_12614 Corchorus olitorius HOM05D003871 ORTHO05D004621 2.2e-120 436.0 290 76.2
Phvul.010G090500 Phaseolus vulgaris HOM05D003871 ORTHO05D004621 2.8e-120 435.6 282 78.0
CiPaw.02G026100 Carya illinoinensis HOM05D003871 ORTHO05D004621 8.2e-120 434.1 283 78.1
Duzib133G0086 Durio zibethinus HOM05D003871 ORTHO05D004621 1.8e-119 433.0 290 75.5
Ciclev10020177m.g Citrus clementina HOM05D003871 ORTHO05D004621 2.4e-119 432.6 281 77.6
PGR042G2189 Punica granatum HOM05D003871 ORTHO05D004621 2.4e-119 432.6 269 79.9
TWI14G1012 Tripterygium wilfordii HOM05D003871 ORTHO05D004621 2.4e-119 432.6 280 77.9
Hma1.2p1_0033F.1_g020520 Hydrangea macrophylla HOM05D003871 ORTHO05D004621 4.1e-119 431.8 285 77.2
TWI23G1177 Tripterygium wilfordii HOM05D003871 ORTHO05D004621 5.3e-119 431.4 281 77.2
Sc23g0003210 Simmondsia chinensis HOM05D003871 ORTHO05D004621 1.5e-118 429.9 288 76.0
CSS0031493 Camellia sinensis var. sinensis HOM05D003871 ORTHO05D004621 3.4e-118 428.7 281 77.6
CSS0038711 Camellia sinensis var. sinensis HOM05D003871 ORTHO05D004621 3.4e-118 428.7 281 77.6
BcaC08g45104 Brassica carinata HOM05D003871 ORTHO05D004621 4.5e-118 428.3 281 76.2
CSS0026628 Camellia sinensis var. sinensis HOM05D003871 ORTHO05D004621 5.9e-118 427.9 280 78.2
CSS0039371 Camellia sinensis var. sinensis HOM05D003871 ORTHO05D004621 5.9e-118 427.9 280 78.2
QL08p050260 Quercus lobata HOM05D003871 ORTHO05D004621 7.7e-118 427.6 298 74.5
Thecc.01G366900 Theobroma cacao HOM05D003871 ORTHO05D004621 7.7e-118 427.6 290 74.1
C06p27130 Brassica napus HOM05D003871 ORTHO05D004621 1.3e-117 426.8 281 75.8
SalBow3G3192 Salvia bowleyana HOM05D003871 ORTHO05D004621 1.3e-117 426.8 282 75.9
Thhalv10005978m.g Eutrema salsugineum HOM05D003871 ORTHO05D004621 1.7e-117 426.4 281 75.1
BolC6t37886H Brassica oleracea HOM05D003871 ORTHO05D004621 2.2e-117 426.0 281 75.8
Cc02_g37360 Coffea canephora HOM05D003871 ORTHO05D004621 2.2e-117 426.0 284 76.8
EL10Ac1g00989 Beta vulgaris HOM05D003871 ORTHO05D004621 2.9e-117 425.6 281 75.8
AUR62022749 Chenopodium quinoa HOM05D000087 ORTHO05D004621 3.8e-117 425.2 282 75.5
BcaB02g07388 Brassica carinata HOM05D003871 ORTHO05D004621 5.0e-117 424.9 281 75.4
Dinv16518 Davidia involucrata HOM05D003871 ORTHO05D004621 5.0e-117 424.9 284 77.1
Duzib138G1891 Durio zibethinus HOM05D003871 ORTHO05D004621 6.5e-117 424.5 290 74.1
Nitab4.5_0005109g0020 Nicotiana tabacum HOM05D003871 ORTHO05D004621 6.5e-117 424.5 277 78.0
Gohir.A11G085600 Gossypium hirsutum HOM05D003871 ORTHO05D004621 1.1e-116 423.7 290 73.1
Eucgr.E00211 Eucalyptus grandis HOM05D003871 ORTHO05D004621 1.4e-116 423.3 272 77.9
Nn1g01381 Nelumbo nucifera HOM05D003871 ORTHO05D004621 1.4e-116 423.3 311 71.1
A07p25320 Brassica napus HOM05D003871 ORTHO05D004621 2.5e-116 422.5 281 75.1
CiPaw.02G026000 Carya illinoinensis HOM05D003871 ORTHO05D004621 2.5e-116 422.5 281 76.5
Haze_15212 Corylus avellana HOM05D003871 ORTHO05D004621 2.5e-116 422.5 303 72.6
Sp5g02240 Schrenkiella parvula HOM05D003871 ORTHO05D004621 2.5e-116 422.5 281 74.7
AUR62004300 Chenopodium quinoa HOM05D003871 ORTHO05D004621 3.2e-116 422.2 282 75.2
Gorai.007G095800 Gossypium raimondii HOM05D003871 ORTHO05D004621 4.2e-116 421.8 290 72.8
Peaxi162Scf00021g00920 Petunia axillaris HOM05D003871 ORTHO05D004621 4.2e-116 421.8 280 76.1
Potri.014G075500 Populus trichocarpa HOM05D003871 ORTHO05D004621 4.2e-116 421.8 271 77.5
Solyc01g091650.3 Solanum lycopersicum HOM05D003871 ORTHO05D004621 4.2e-116 421.8 277 77.6
Potri.002G154500 Populus trichocarpa HOM05D003871 ORTHO05D004621 5.5e-116 421.4 270 77.0
Rhsim07G0020500 Rhododendron simsii HOM05D003871 ORTHO05D004621 5.5e-116 421.4 315 70.2
Migut.B01700 Erythranthe guttata HOM05D003871 ORTHO05D004621 1.2e-115 420.2 283 76.0
BcaC07g42655 Brassica carinata HOM05D003871 ORTHO05D004621 2.1e-115 419.5 278 74.1
CAN.G170.26 Capsicum annuum HOM05D003871 ORTHO05D004621 2.1e-115 419.5 281 75.8
Sopen01g037420 Solanum pennellii HOM05D003871 ORTHO05D004621 2.1e-115 419.5 281 76.2
AL5G43380 Arabidopsis lyrata HOM05D003871 ORTHO05D004621 3.6e-115 418.7 280 74.3
Gohir.D11G089800 Gossypium hirsutum HOM05D003871 ORTHO05D004621 3.6e-115 418.7 290 72.4
Carub.0005s2779 Capsella rubella HOM05D003871 ORTHO05D004621 4.6e-115 418.3 280 74.6
Sabra02G0122500 Salix brachista HOM05D003871 ORTHO05D004621 6.1e-115 417.9 270 76.7
PGSC0003DMG400027768 Solanum tuberosum HOM05D003871 ORTHO05D004621 6.1e-115 417.9 277 77.6
AT3G61140 Arabidopsis thaliana HOM05D003871 ORTHO05D004621 7.9e-115 417.5 280 74.3
Medtr8g432630 Medicago truncatula HOM05D003871 ORTHO05D004621 1.0e-114 417.2 283 74.6
PSO478G4452 Papaver somniferum HOM05D003871 ORTHO05D004621 1.0e-114 417.2 281 74.7
PSO782G3116 Papaver somniferum HOM05D003871 ORTHO05D004621 1.0e-114 417.2 282 74.8
HanXRQChr17g0560011 Helianthus annuus HOM05D003871 ORTHO05D004621 1.8e-114 416.4 284 74.6
SGA_v2.0_scaffold153G37076 Striga asiatica HOM05D003871 ORTHO05D004621 1.8e-114 416.4 282 74.8
BcaC07g40617 Brassica carinata HOM05D003871 ORTHO05D004621 3.9e-114 415.2 281 71.5
Aa31LG10G15210 Aethionema arabicum HOM05D003871 ORTHO05D004621 8.8e-114 414.1 281 73.7
C08p35990 Brassica napus HOM05D003871 ORTHO05D004621 1.1e-113 413.7 281 70.8
BolC8t51181H Brassica oleracea HOM05D003871 ORTHO05D004621 1.1e-113 413.7 281 70.8
MSTRG.4874 Avicennia marina HOM05D003871 ORTHO05D004621 4.3e-113 411.8 282 75.2
Gohir.A12G104100 Gossypium hirsutum HOM05D003871 ORTHO05D004621 4.3e-113 411.8 288 72.6
CARHR171420 Cardamine hirsuta HOM05D003871 ORTHO05D004621 1.7e-112 409.8 280 72.5
Gorai.008G117100 Gossypium raimondii HOM05D003871 ORTHO05D004621 1.7e-112 409.8 288 72.6
THA.LOC104802015 Tarenaya hassleriana HOM05D003871 ORTHO05D004621 2.2e-112 409.5 280 73.9
A09p53200 Brassica napus HOM05D003871 ORTHO05D004621 6.3e-112 407.9 282 70.9
BraA09t40745Z Brassica rapa HOM05D003871 ORTHO05D004621 6.3e-112 407.9 282 70.9
Nitab4.5_0004973g0020 Nicotiana tabacum HOM05D003871 ORTHO05D004621 6.3e-112 407.9 269 77.3
Ca_07858_v3 Cicer arietinum L. HOM05D003871 ORTHO05D004621 1.8e-111 406.4 282 71.6
MD01G1050400 Malus domestica HOM05D003871 ORTHO05D004621 1.5e-110 403.3 289 71.6
Gohir.D12G107500 Gossypium hirsutum HOM05D003871 ORTHO05D004621 7.7e-110 401.0 288 71.5
unitig_22.g5361 Utricularia gibba HOM05D003871 ORTHO05D004621 3.8e-109 398.7 282 71.3
MSTRG.20801 Avicennia marina HOM05D003871 ORTHO05D004621 6.5e-109 397.9 283 71.0
vmacro20965 Vaccinium macrocarpon HOM05D003871 ORTHO05D004621 7.2e-108 394.4 319 66.1
Aqoxy7G00418 Aquilegia oxysepala HOM05D003871 ORTHO05D004621 9.4e-108 394.0 272 73.2
ATR0757G035 Amborella trichopoda HOM05D003871 ORTHO05D004621 1.6e-107 393.3 276 72.5
Psat3g113760 Pisum sativum HOM05D003871 ORTHO05D004621 1.0e-106 390.6 280 67.9
CDE02G2895 Ceratophyllum demersum HOM05D003871 ORTHO05D004621 1.8e-106 389.8 280 70.0
TPR.G37846 Trifolium pratense HOM05D003871 ORTHO05D004621 1.8e-106 389.8 281 68.7
CDE11G1114 Ceratophyllum demersum HOM05D003871 ORTHO05D004621 5.1e-106 388.3 280 70.0
HPP92_007366 Vanilla planifolia HOM05D003871 ORTHO05D004621 2.8e-104 382.5 287 67.6
HanXRQChr16g0523641 Helianthus annuus HOM05D003871 ORTHO05D004621 3.7e-104 382.1 257 73.9
ECA234G1945 Erigeron canadensis HOM05D003871 ORTHO05D005816 6.3e-104 381.3 296 68.6
Rhsim01G0153400 Rhododendron simsii HOM05D003871 ORTHO05D004621 1.2e-102 377.1 371 57.4
Lsat_1_v5_gn_4_37061 Lactuca sativa HOM05D003871 ORTHO05D004621 3.5e-102 375.6 264 72.7
Ca_23745_v3 Cicer arietinum L. HOM05D003871 ORTHO05D004621 1.7e-101 373.2 241 77.6
Medtr7g076160 Medicago truncatula HOM05D003871 ORTHO05D004621 3.8e-101 372.1 281 64.4
Os03g0116500 Oryza sativa ssp. japonica HOM05D003871 ORTHO05D004621 5.0e-101 371.7 281 68.3
PSO782G0235 Papaver somniferum HOM05D003871 ORTHO05D004621 6.5e-101 371.3 280 68.9
Hund27317 Selenicereus undatus HOM05D003871 ORTHO05D004621 1.1e-100 370.5 276 67.0
DCAR_016001 Daucus carota HOM05D003871 ORTHO05D004621 9.4e-100 367.5 281 67.6
SHI13479 Sapria himalayana HOM05D003871 ORTHO05D004621 4.7e-99 365.2 252 71.0
SGA_v2.0_scaffold95G28865 Striga asiatica HOM05D003871 ORTHO05D004621 6.1e-99 364.8 291 67.7
Zm00001eb001110 Zea mays HOM05D003871 ORTHO05D004621 8.8e-98 360.9 281 66.2
MBI12_g36508_MAGBIO Magnolia biondii HOM05D003871 ORTHO05D004621 3.7e-96 355.5 261 70.5
SEGI_36445 Sequoiadendron giganteum HOM05D003871 ORTHO05D004621 2.0e-94 349.7 257 68.5
Sabra14G0056300 Salix brachista HOM05D003871 ORTHO05D004621 2.6e-94 349.4 231 75.8
SEGI_15431 Sequoiadendron giganteum HOM05D003871 ORTHO05D004621 4.5e-94 348.6 284 64.4
Pp3c11_20980 Physcomitrium patens HOM05D003871 ORTHO05D004621 6.5e-93 344.7 246 68.7
SMO365G0068 Selaginella moellendorffii HOM05D003871 ORTHO05D004621 1.2e-91 340.5 261 64.4
Mapoly0035s0029 Marchantia polymorpha HOM05D003871 ORTHO05D004621 4.7e-91 338.6 246 69.5
Pp3c7_5660 Physcomitrium patens HOM05D003871 ORTHO05D004621 1.5e-89 333.6 258 64.0
vmacro13332 Vaccinium macrocarpon HOM05D003871 ORTHO05D004621 7.5e-89 331.3 278 65.8
Lj7C518G12 Lonicera japonica HOM05D003871 ORTHO05D004621 5.2e-82 308.5 241 68.9
AagrBONN_evm.TU.Sc2ySwM_362.2141 Anthoceros agrestis HOM05D003871 ORTHO05D004621 1.5e-81 307.0 206 72.3
Carub.0003s3282 Capsella rubella HOM05D003871 ORTHO05D004621 3.0e-74 282.7 280 56.4
Cre05.g234300 Chlamydomonas reinhardtii HOM05D003871 ORTHO05D004621 5.7e-73 278.5 259 54.1
Cpa.g.sc18.218 Carica papaya HOM05D003871 ORTHO05D004621 3.3e-68 262.7 149 85.9
CSS0019666 Camellia sinensis var. sinensis HOM05D003871 ORTHO05D004621 2.3e-66 256.5 281 55.2
MCO11G248 Micromonas commoda HOM05D003871 ORTHO05D004621 6.8e-66 255.0 245 51.4
Actinidia38296 Actinidia chinensis HOM05D003871 ORTHO05D004621 6.6e-61 238.4 138 83.3
PRCOL_00001778 Prasinoderma coloniale HOM05D003871 ORTHO05D004621 7.3e-60 235.0 243 52.7
Actinidia32928 Actinidia chinensis HOM05D003871 ORTHO05D004621 1.7e-56 223.8 167 68.9
EL10Ac1g00724 Beta vulgaris HOM05D003871 ORTHO05D004621 4.1e-55 219.2 157 72.0
Zm00001eb403970 Zea mays HOM05D003871 ORTHO05D004621 1.2e-43 181.0 162 60.5
Medtr6g025300 Medicago truncatula HOM05D003871 ORTHO05D004621 1.1e-42 177.9 316 36.1
Oeu038681.1 Olea europaea HOM05D003871 ORTHO05D004621 1.1e-42 177.9 116 75.0
Haze_27079 Corylus avellana HOM05D003871 ORTHO05D004621 2.9e-40 169.9 267 40.1
Gohir.A06G193200 Gossypium hirsutum HOM05D003871 ORTHO05D004621 7.1e-39 165.2 151 57.6
Gohir.A05G281600 Gossypium hirsutum HOM05D003871 ORTHO05D004621 1.0e-37 161.4 151 55.6
Hma1.2p1_0775F.1_g216560 Hydrangea macrophylla HOM05D003871 ORTHO05D004621 3.9e-37 159.5 98 79.6
arahy.Tifrunner.gnm1.ann1.GU6ASX Arachis hypogaea HOM05D003871 ORTHO05D004621 3.3e-36 156.4 93 76.3
ClCG06G000070 Citrullus lanatus HOM05D002904 ORTHO05D003206 2.4e-34 150.2 310 33.5
CARHR257760 Cardamine hirsuta HOM05D003871 ORTHO05D004621 1.6e-30 137.5 137 54.7
CBR_g34614 Chara braunii HOM05D000019 ORTHO05D000002 1.0e-29 134.8 247 36.0
Cfa025745 Carpinus fangiana HOM05D003871 ORTHO05D004621 8.7e-29 131.7 265 34.0
AL8G39820 Arabidopsis lyrata HOM05D003871 ORTHO05D004621 2.8e-27 126.7 240 31.7
C03p49270 Brassica napus HOM05D003871 ORTHO05D004621 1.8e-26 124.0 245 34.7
Lsat_1_v5_gn_9_24280 Lactuca sativa HOM05D003871 ORTHO05D004621 9.0e-26 121.7 137 52.6
Peaxi162Scf00233g00516 Petunia axillaris HOM05D003871 ORTHO05D004621 3.4e-25 119.8 100 61.0
Lsat_1_v5_gn_8_32720 Lactuca sativa HOM05D003110 ORTHO05D003585 2.9e-24 116.7 111 57.7
Actinidia38295 Actinidia chinensis HOM05D003871 ORTHO05D004621 8.4e-24 115.2 96 65.6
BcaB04g17067 Brassica carinata HOM05D003871 ORTHO05D004621 1.2e-22 111.3 101 58.4
BcaB02g11168 Brassica carinata HOM05D003871 ORTHO05D004621 1.6e-22 110.9 101 56.4
C03p23120 Brassica napus HOM05D003871 ORTHO05D032550 5.6e-20 102.4 211 35.1
BcaB08g34774 Brassica carinata HOM05D000054 ORTHO05D000286 1.2e-17 94.7 101 51.5
BcaC01g03725 Brassica carinata HOM05D003871 ORTHO05D004621 1.4e-15 87.8 233 31.8
BolC3t17208H Brassica oleracea HOM05D003843 ORTHO05D004621 5.7e-12 75.9 95 40.0
AT3G12850 Arabidopsis thaliana HOM05D061468 ORTHO05D038599 1.5e-09 67.8 238 27.7
BolC3t14713H Brassica oleracea HOM05D000059 ORTHO05D032550 3.2e-07 60.1 51 60.8
ATR0757G136 Amborella trichopoda HOM05D003871 ORTHO05D004621 7.2e-07 58.9 90 45.6
AL3G13530 Arabidopsis lyrata HOM05D003871 ORTHO05D023606 7.2e-07 58.9 283 25.4
Lj5g0008363 Lotus japonicus HOM05D003871 ORTHO05D236905 2.7e-06 57.0 51 64.7
CAN.G80.2 Capsicum annuum HOM05D001349 ORTHO05D024033 4.6e-06 56.2 41 70.7
RcHm_v2.0_Chr7g0198471 Rosa chinensis HOM05D003871 ORTHO05D004621 6.1e-06 55.8 26 92.3


User provided reference genes

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