Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0351941 Rosa chinensis HOM05D006225 ORTHO05D007676 7.6e-92 340.5 175 100.0
FvH4_7g12860 Fragaria vesca HOM05D006225 ORTHO05D007676 2.5e-87 325.5 175 94.3
FAN06G1752 Fragaria x ananassa HOM05D006225 ORTHO05D007676 2.5e-87 325.5 175 94.3
FAN06G4019 Fragaria x ananassa HOM05D006225 ORTHO05D007676 2.5e-87 325.5 175 94.3
FAN03G3320 Fragaria x ananassa HOM05D006225 ORTHO05D007676 7.4e-87 323.9 175 94.9
MD02G1195600 Malus domestica HOM05D006225 ORTHO05D007676 9.4e-82 307.0 175 86.9
Prupe.2G152900 Prunus persica HOM05D006225 ORTHO05D007676 3.0e-80 302.0 175 85.7
CANSAT78G2127 Cannabis sativa HOM05D006225 ORTHO05D007676 2.4e-77 292.4 175 83.4
CiPaw.03G061500 Carya illinoinensis HOM05D006225 ORTHO05D007676 1.5e-76 289.7 175 80.6
Atru.chr1.1695 Acer truncatum HOM05D006225 ORTHO05D007676 4.5e-76 288.1 175 82.9
GSVIVG01031021001 Vitis vinifera HOM05D006225 ORTHO05D007676 2.9e-75 285.4 175 82.3
COL.COLO4_09333 Corchorus olitorius HOM05D006225 ORTHO05D007676 1.4e-74 283.1 175 80.6
Thecc.04G133700 Theobroma cacao HOM05D006225 ORTHO05D007676 4.2e-74 281.6 175 80.6
QL02p051369 Quercus lobata HOM05D006225 ORTHO05D007676 5.5e-74 281.2 174 80.5
Cpa.g.sc282.8 Carica papaya HOM05D006225 ORTHO05D007676 7.2e-74 280.8 175 78.9
TWI77G0942 Tripterygium wilfordii HOM05D006225 ORTHO05D007676 7.2e-74 280.8 175 81.7
Ciclev10012061m.g Citrus clementina HOM05D006225 ORTHO05D007676 9.4e-74 280.4 175 78.9
ClCG05G011660 Citrullus lanatus HOM05D006225 ORTHO05D007676 4.7e-73 278.1 175 78.9
PGR042G1089 Punica granatum HOM05D006225 ORTHO05D007676 4.7e-73 278.1 175 77.7
Lj2g0022404 Lotus japonicus HOM05D006225 ORTHO05D007676 1.0e-72 276.9 175 78.3
Lalb_Chr06g0174551 Lupinus albus HOM05D006225 ORTHO05D007676 1.0e-72 276.9 175 78.9
Sabra17G0095400 Salix brachista HOM05D006225 ORTHO05D007676 3.0e-72 275.4 175 77.7
Lj4A191G46 Lonicera japonica HOM05D006225 ORTHO05D007676 5.1e-72 274.6 176 80.1
Potri.017G115200 Populus trichocarpa HOM05D006225 ORTHO05D007676 5.1e-72 274.6 175 78.3
Sed0021803 Sechium edule HOM05D006225 ORTHO05D007676 5.1e-72 274.6 175 77.7
TAR374G0830 Trochodendron aralioides HOM05D006225 ORTHO05D007676 6.7e-72 274.2 175 78.9
Sc11g0008330 Simmondsia chinensis HOM05D006225 ORTHO05D007676 2.0e-71 272.7 175 76.6
Eucgr.G01883 Eucalyptus grandis HOM05D006225 ORTHO05D007676 2.6e-71 272.3 175 76.0
Manes.02G068700 Manihot esculenta HOM05D006225 ORTHO05D007676 4.4e-71 271.6 176 78.4
CSS0013578 Camellia sinensis var. sinensis HOM05D006225 ORTHO05D007676 5.7e-71 271.2 175 78.3
CsaV3_3G020710 Cucumis sativus L. HOM05D006225 ORTHO05D007676 7.4e-71 270.8 175 77.1
CSS0045838 Camellia sinensis var. sinensis HOM05D006225 ORTHO05D007676 1.3e-70 270.0 175 77.7
Phvul.004G065800 Phaseolus vulgaris HOM05D006225 ORTHO05D007676 3.7e-70 268.5 177 78.5
Glyma.13G045900 Glycine max HOM05D006225 ORTHO05D007676 4.8e-70 268.1 177 76.3
Gohir.A12G053700 Gossypium hirsutum HOM05D006225 ORTHO05D007676 2.4e-69 265.8 175 75.4
Gohir.D12G052400 Gossypium hirsutum HOM05D006225 ORTHO05D007676 2.4e-69 265.8 175 75.4
Gorai.008G055500 Gossypium raimondii HOM05D006225 ORTHO05D007676 2.4e-69 265.8 175 75.4
Lsat_1_v5_gn_2_79301 Lactuca sativa HOM05D006225 ORTHO05D007676 2.4e-69 265.8 175 75.4
THA.LOC104823860 Tarenaya hassleriana HOM05D006225 ORTHO05D007676 3.1e-69 265.4 167 77.2
Glyma.19G049100 Glycine max HOM05D006225 ORTHO05D007676 9.1e-69 263.8 177 75.1
Medtr6g018620 Medicago truncatula HOM05D006225 ORTHO05D007676 1.2e-68 263.5 175 76.0
TPR.G32473 Trifolium pratense HOM05D006225 ORTHO05D007676 5.9e-68 261.2 175 75.4
Peaxi162Scf00394g00621 Petunia axillaris HOM05D006225 ORTHO05D007676 1.3e-67 260.0 175 74.9
Hund13715 Selenicereus undatus HOM05D006225 ORTHO05D007676 1.3e-67 260.0 165 74.5
Cc07_g08810 Coffea canephora HOM05D006225 ORTHO05D007676 1.7e-67 259.6 175 76.0
AUR62023301 Chenopodium quinoa HOM05D006225 ORTHO05D007676 2.9e-67 258.8 175 73.1
Ca_13730_v3 Cicer arietinum L. HOM05D006225 ORTHO05D007676 2.9e-67 258.8 175 74.9
Thhalv10027811m.g Eutrema salsugineum HOM05D006225 ORTHO05D007676 2.9e-67 258.8 170 73.5
Psat1g081360 Pisum sativum HOM05D006225 ORTHO05D007676 2.9e-67 258.8 175 74.9
ECA238G0211 Erigeron canadensis HOM05D006225 ORTHO05D007676 5.0e-67 258.1 175 73.1
Sopen02g030750 Solanum pennellii HOM05D006225 ORTHO05D007676 5.0e-67 258.1 175 74.9
SGA_v2.0_scaffold33G13506 Striga asiatica HOM05D006225 ORTHO05D007676 8.5e-67 257.3 175 76.0
Aa31LG9G17110 Aethionema arabicum HOM05D006225 ORTHO05D007676 1.5e-66 256.5 169 72.8
AL7G52230 Arabidopsis lyrata HOM05D006225 ORTHO05D007676 1.9e-66 256.1 166 74.7
FAN10G1546 Fragaria x ananassa HOM05D006225 ORTHO05D007676 2.5e-66 255.8 175 80.0
AT5G38380 Arabidopsis thaliana HOM05D006225 ORTHO05D007676 3.2e-66 255.4 166 74.7
Sp7g03650 Schrenkiella parvula HOM05D006225 ORTHO05D007676 4.2e-66 255.0 170 71.8
BcaB02g08011 Brassica carinata HOM05D006225 ORTHO05D007676 5.5e-66 254.6 170 71.8
Carub.0007s3769 Capsella rubella HOM05D006225 ORTHO05D007676 9.4e-66 253.8 173 71.7
VMungo0464G1087 Vigna mungo HOM05D006225 ORTHO05D007676 9.4e-66 253.8 178 75.3
HanXRQChr14g0438471 Helianthus annuus HOM05D006225 ORTHO05D007676 2.7e-65 252.3 175 71.4
CARHR214220 Cardamine hirsuta HOM05D006225 ORTHO05D007676 6.1e-65 251.1 173 70.5
Migut.H00218 Erythranthe guttata HOM05D006225 ORTHO05D007676 8.0e-65 250.8 175 70.9
SalBow3G1182 Salvia bowleyana HOM05D006225 ORTHO05D007676 1.4e-64 250.0 170 74.1
A04p11390 Brassica napus HOM05D006225 ORTHO05D007676 3.0e-64 248.8 168 71.4
C04p45020 Brassica napus HOM05D006225 ORTHO05D007676 3.0e-64 248.8 168 71.4
BolC4t26080H Brassica oleracea HOM05D006225 ORTHO05D007676 3.0e-64 248.8 168 71.4
BraA04t16801Z Brassica rapa HOM05D006225 ORTHO05D007676 3.0e-64 248.8 168 71.4
PSO063G1031 Papaver somniferum HOM05D006225 ORTHO05D007676 3.0e-64 248.8 173 71.7
BcaB06g27198 Brassica carinata HOM05D006225 ORTHO05D007676 3.9e-64 248.4 168 71.4
AUR62009001 Chenopodium quinoa HOM05D006225 ORTHO05D007676 5.2e-64 248.1 193 66.3
PSO782G1071 Papaver somniferum HOM05D006225 ORTHO05D007676 8.8e-64 247.3 173 71.1
BcaC02g09645 Brassica carinata HOM05D006225 ORTHO05D007676 1.1e-63 246.9 168 70.8
Cfa007923 Carpinus fangiana HOM05D006225 ORTHO05D010559 2.2e-62 242.7 136 87.5
Os07g0283200 Oryza sativa ssp. japonica HOM05D006225 ORTHO05D007676 2.2e-62 242.7 175 65.7
Zm00001eb360540 Zea mays HOM05D006225 ORTHO05D007676 1.6e-60 236.5 175 64.6
Zm00001eb156340 Zea mays HOM05D006225 ORTHO05D007676 1.0e-59 233.8 175 63.4
Nn4g23886 Nelumbo nucifera HOM05D006225 ORTHO05D007676 1.3e-59 233.4 139 82.7
Aqoxy3G03957 Aquilegia oxysepala HOM05D006225 ORTHO05D007676 5.0e-59 231.5 151 74.2
ATR1125G113 Amborella trichopoda HOM05D006225 ORTHO05D007676 5.2e-56 221.5 175 62.9
vmacro05555 Vaccinium macrocarpon HOM05D006225 ORTHO05D007676 8.8e-56 220.7 194 62.4
HPP92_020146 Vanilla planifolia HOM05D006225 ORTHO05D007676 1.2e-55 220.3 175 61.1
EL10Ac2g04565 Beta vulgaris HOM05D006225 ORTHO05D007676 4.4e-55 218.4 149 71.8
CDE02G4721 Ceratophyllum demersum HOM05D006225 ORTHO05D007676 9.8e-55 217.2 172 64.0
Nitab4.5_0000912g0210 Nicotiana tabacum HOM05D006225 ORTHO05D007676 9.8e-55 217.2 138 77.5
Nitab4.5_0000659g0030 Nicotiana tabacum HOM05D006225 ORTHO05D007676 1.3e-54 216.9 138 76.8
PGSC0003DMG400026393 Solanum tuberosum HOM05D006225 ORTHO05D007676 1.8e-53 213.0 142 73.9
MELO3C023807.2 Cucumis melo HOM05D006225 ORTHO05D007676 5.4e-53 211.5 141 76.6
SEGI_09013 Sequoiadendron giganteum HOM05D006225 ORTHO05D007676 2.0e-52 209.5 175 60.0
Oeu030786.4 Olea europaea HOM05D006225 ORTHO05D007676 1.3e-51 206.8 142 73.2
Solyc02g086060.4 Solanum lycopersicum HOM05D006225 ORTHO05D007676 3.6e-49 198.7 141 73.8
unitig_0.g7 Utricularia gibba HOM05D006225 ORTHO05D007676 7.5e-47 191.0 152 62.5
arahy.Tifrunner.gnm1.ann1.IRK6TR Arachis hypogaea HOM05D006225 ORTHO05D007676 7.2e-42 174.5 213 50.2
Pp3c6_6620 Physcomitrium patens HOM05D006225 ORTHO05D007676 2.8e-41 172.6 177 50.3
arahy.Tifrunner.gnm1.ann1.80Z7L9 Arachis hypogaea HOM05D006225 ORTHO05D007676 1.4e-40 170.2 218 49.1
Mapoly0135s0006 Marchantia polymorpha HOM05D006225 ORTHO05D007676 5.2e-40 168.3 177 48.6
Haze_14153 Corylus avellana HOM05D006225 ORTHO05D007676 4.6e-36 155.2 95 82.1
Rhsim10G0067300 Rhododendron simsii HOM05D006225 ORTHO05D007676 5.0e-35 151.8 137 61.3
Oeu008428.1 Olea europaea HOM05D006225 ORTHO05D007676 2.0e-31 139.8 175 49.7
MD07G1125400 Malus domestica HOM05D006225 ORTHO05D007676 2.7e-28 129.4 115 60.0
SMO196G0121 Selaginella moellendorffii HOM05D006225 ORTHO05D007676 4.6e-28 128.6 147 46.9
Actinidia36322 Actinidia chinensis HOM05D006225 ORTHO05D007676 9.5e-26 120.9 82 72.0
Eucgr.L03301 Eucalyptus grandis HOM05D006225 ORTHO05D007676 1.1e-24 117.5 79 70.9
CBR_g8910 Chara braunii HOM05D006555 ORTHO05D008376 5.6e-18 95.1 151 38.4
Mapoly0085s0089 Marchantia polymorpha HOM05D006555 ORTHO05D008376 4.9e-14 82.0 142 30.3
BcaC04g24063 Brassica carinata HOM05D006225 ORTHO05D007676 1.1e-10 70.9 57 57.9
SEGI_26593 Sequoiadendron giganteum HOM05D006555 ORTHO05D008376 3.6e-09 65.9 156 28.8
Eucgr.H04974 Eucalyptus grandis HOM05D006225 ORTHO05D007676 2.0e-07 60.1 46 63.0
Lsat_1_v5_gn_0_24261 Lactuca sativa HOM05D006555 ORTHO05D008376 3.8e-06 55.8 154 26.0


User provided reference genes

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