Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0351881 Rosa chinensis HOM05D004815 ORTHO05D005742 5.6e-33 143.7 72 100.0
RcHm_v2.0_Chr1g0351921 Rosa chinensis HOM05D004815 ORTHO05D005742 5.1e-10 67.4 39 89.7
Cfa001810 Carpinus fangiana HOM05D004815 ORTHO05D005742 8.8e-10 66.6 38 89.5
Haze_16704 Corylus avellana HOM05D004815 ORTHO05D005742 1.5e-09 65.9 38 86.8
FAN01G1324 Fragaria x ananassa HOM05D004815 ORTHO05D005742 2.5e-09 65.1 39 84.6
FAN10G2694 Fragaria x ananassa HOM05D004815 ORTHO05D005742 2.5e-09 65.1 39 84.6
CiPaw.01G257600 Carya illinoinensis HOM05D004815 ORTHO05D005742 5.7e-09 63.9 39 79.5
Manes.01G263200 Manihot esculenta HOM05D004815 ORTHO05D005742 5.7e-09 63.9 39 84.6
QL08p050919 Quercus lobata HOM05D004815 ORTHO05D005742 7.4e-09 63.5 40 80.0
MD02G1195800 Malus domestica HOM05D004815 ORTHO05D005742 9.7e-09 63.2 39 82.1
FvH4_7g12840 Fragaria vesca HOM05D004815 ORTHO05D005742 1.3e-08 62.8 39 82.1
FAN06G3277 Fragaria x ananassa HOM05D004815 ORTHO05D005742 1.3e-08 62.8 39 82.1
FAN06G3416 Fragaria x ananassa HOM05D004815 ORTHO05D005742 1.3e-08 62.8 39 82.1
TAR629G0568 Trochodendron aralioides HOM05D004815 ORTHO05D005742 1.3e-08 62.8 39 84.6
TAR636G2513 Trochodendron aralioides HOM05D004815 ORTHO05D005742 2.2e-08 62.0 39 82.1
CANSAT56G0719 Cannabis sativa HOM05D004815 ORTHO05D005742 4.8e-08 60.8 39 79.5
Duzib133G0793 Durio zibethinus HOM05D004815 ORTHO05D005742 6.3e-08 60.5 40 77.5
Lalb_Chr17g0340041 Lupinus albus HOM05D004815 ORTHO05D005742 6.3e-08 60.5 42 73.8
Prupe.2G152800 Prunus persica HOM05D004815 ORTHO05D005742 6.3e-08 60.5 39 79.5
GSVIVG01027589001 Vitis vinifera HOM05D004815 ORTHO05D005742 8.2e-08 60.1 39 79.5
Cpa.g.sc18.178 Carica papaya HOM05D004815 ORTHO05D005742 1.1e-07 59.7 40 77.5
Manes.05G040900 Manihot esculenta HOM05D004815 ORTHO05D005742 1.1e-07 59.7 39 79.5
Atru.chr5.381_Atru.chr5.382 Acer truncatum HOM05D004815 ORTHO05D005742 1.4e-07 59.3 39 82.1
Aa31LG1G27160 Aethionema arabicum HOM05D004815 ORTHO05D005742 1.4e-07 59.3 39 76.9
Duzib138G1778 Durio zibethinus HOM05D004815 ORTHO05D005742 1.4e-07 59.3 40 75.0
Gohir.A07G144600 Gossypium hirsutum HOM05D004815 ORTHO05D005742 1.4e-07 59.3 40 75.0
Gohir.D07G150500 Gossypium hirsutum HOM05D004815 ORTHO05D005742 1.4e-07 59.3 40 75.0
Gorai.001G172600 Gossypium raimondii HOM05D004815 ORTHO05D005742 1.4e-07 59.3 40 75.0
Dinv43746 Davidia involucrata HOM05D004815 ORTHO05D005742 3.1e-07 58.2 43 72.1
MD02G1195700 Malus domestica HOM05D004815 ORTHO05D005742 3.1e-07 58.2 39 76.9
Rhsim07G0022400 Rhododendron simsii HOM05D004815 ORTHO05D005742 3.1e-07 58.2 40 72.5
TPR.G17590 Trifolium pratense HOM05D004815 ORTHO05D005742 4.1e-07 57.8 42 76.2
Glyma.03G018700 Glycine max HOM05D004815 ORTHO05D005742 6.9e-07 57.0 42 71.4
Medtr8g033040 Medicago truncatula HOM05D004815 ORTHO05D005742 6.9e-07 57.0 42 73.8
Phvul.010G089200 Phaseolus vulgaris HOM05D004815 ORTHO05D005742 9.1e-07 56.6 42 71.4
Potri.002G152300 Populus trichocarpa HOM05D004815 ORTHO05D005742 9.1e-07 56.6 41 70.7
TWI23G0970 Tripterygium wilfordii HOM05D004815 ORTHO05D005742 9.1e-07 56.6 40 70.0
ATR0757G181 Amborella trichopoda HOM05D004815 ORTHO05D005742 1.2e-06 56.2 41 68.3
MELO3C022521.2 Cucumis melo HOM05D004815 ORTHO05D005742 1.2e-06 56.2 41 70.7
TWI59G0538 Tripterygium wilfordii HOM05D004815 ORTHO05D005742 1.2e-06 56.2 40 70.0
Ca_23774_v3 Cicer arietinum L. HOM05D004815 ORTHO05D005742 1.5e-06 55.8 41 70.7
Eucgr.D02393 Eucalyptus grandis HOM05D004815 ORTHO05D005742 1.5e-06 55.8 41 65.9
Eucgr.D02397 Eucalyptus grandis HOM05D004815 ORTHO05D005742 1.5e-06 55.8 34 76.5
Sed0004795 Sechium edule HOM05D004815 ORTHO05D005742 1.5e-06 55.8 41 73.2
Actinidia09581 Actinidia chinensis HOM05D004815 ORTHO05D005742 2.0e-06 55.5 40 70.0
BcaB01g03258 Brassica carinata HOM05D004815 ORTHO05D005742 2.0e-06 55.5 34 82.4
BcaB02g09018 Brassica carinata HOM05D004815 ORTHO05D005742 2.0e-06 55.5 34 82.4
BcaC01g05112 Brassica carinata HOM05D004815 ORTHO05D005742 2.0e-06 55.5 34 82.4
A03p25310 Brassica napus HOM05D004815 ORTHO05D005742 2.0e-06 55.5 34 82.4
C03p30200 Brassica napus HOM05D004815 ORTHO05D005742 2.0e-06 55.5 34 82.4
BolC3t15369H Brassica oleracea HOM05D004815 ORTHO05D005742 2.0e-06 55.5 34 82.4
BraA03t11735Z Brassica rapa HOM05D004815 ORTHO05D005742 2.0e-06 55.5 34 82.4
Thhalv10001499m.g Eutrema salsugineum HOM05D004815 ORTHO05D005742 2.0e-06 55.5 34 82.4
Sp4g27730 Schrenkiella parvula HOM05D004815 ORTHO05D005742 2.0e-06 55.5 38 73.7
Actinidia31455 Actinidia chinensis HOM05D004815 ORTHO05D005742 2.6e-06 55.1 40 70.0
Ciclev10023945m.g Citrus clementina HOM05D004815 ORTHO05D005742 2.6e-06 55.1 41 73.2
Psat4g200880 Pisum sativum HOM05D004815 ORTHO05D005742 2.6e-06 55.1 41 73.2
Carub.0004s2834 Capsella rubella HOM05D004815 ORTHO05D005742 3.4e-06 54.7 34 79.4
Lalb_Chr10g0097591 Lupinus albus HOM05D004815 ORTHO05D005742 3.4e-06 54.7 42 66.7
vmacro13348 Vaccinium macrocarpon HOM05D004815 ORTHO05D005742 3.4e-06 54.7 39 69.2
BcaC02g12192 Brassica carinata HOM05D004815 ORTHO05D005742 4.5e-06 54.3 34 79.4
A05p05650 Brassica napus HOM05D004815 ORTHO05D005742 4.5e-06 54.3 34 79.4
C04p06610 Brassica napus HOM05D004815 ORTHO05D005742 4.5e-06 54.3 34 79.4
BolC4t22283H Brassica oleracea HOM05D004815 ORTHO05D005742 4.5e-06 54.3 34 79.4
BraA05t19537Z Brassica rapa HOM05D004815 ORTHO05D005742 4.5e-06 54.3 34 79.4
ClCG06G000170 Citrullus lanatus HOM05D004815 ORTHO05D005742 4.5e-06 54.3 41 70.7
CsaV3_6G005940 Cucumis sativus L. HOM05D004815 ORTHO05D005742 4.5e-06 54.3 41 68.3
Ah.15g094120 Amaranthus hybridus HOM05D001215 ORTHO05D001387 5.9e-06 53.9 39 71.8
Dinv32412 Davidia involucrata HOM05D004815 ORTHO05D005742 5.9e-06 53.9 35 77.1
Eucgr.D02410 Eucalyptus grandis HOM05D004815 ORTHO05D005742 5.9e-06 53.9 37 67.6
PGR031G2979 Punica granatum HOM05D004815 ORTHO05D005742 5.9e-06 53.9 39 69.2
VMungo0331G0142 Vigna mungo HOM05D004815 ORTHO05D005742 5.9e-06 53.9 43 67.4
CARHR140910 Cardamine hirsuta HOM05D004815 ORTHO05D005742 7.7e-06 53.5 34 76.5
MBI04_g28567_MAGBIO Magnolia biondii HOM05D004815 ORTHO05D005742 7.7e-06 53.5 41 68.3
THA.LOC104817269 Tarenaya hassleriana HOM05D004815 ORTHO05D005742 7.7e-06 53.5 43 65.1
TPR.G17395 Trifolium pratense HOM05D004815 ORTHO05D005742 7.7e-06 53.5 42 69.0


User provided reference genes

Program Settings