Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0351871 Rosa chinensis HOM05D004815 ORTHO05D005742 4.2e-22 107.1 52 100.0
FvH4_7g12840 Fragaria vesca HOM05D004815 ORTHO05D005742 2.0e-19 98.2 51 92.2
FAN01G1324 Fragaria x ananassa HOM05D004815 ORTHO05D005742 2.0e-19 98.2 51 92.2
FAN06G3277 Fragaria x ananassa HOM05D004815 ORTHO05D005742 2.0e-19 98.2 51 92.2
FAN06G3416 Fragaria x ananassa HOM05D004815 ORTHO05D005742 2.0e-19 98.2 51 92.2
FAN10G2694 Fragaria x ananassa HOM05D004815 ORTHO05D005742 2.0e-19 98.2 51 92.2
RcHm_v2.0_Chr1g0351921 Rosa chinensis HOM05D004815 ORTHO05D005742 3.3e-19 97.4 51 92.2
MD02G1195800 Malus domestica HOM05D004815 ORTHO05D005742 1.8e-17 91.7 51 86.3
Haze_16704 Corylus avellana HOM05D004815 ORTHO05D005742 3.8e-15 84.0 51 76.5
CiPaw.01G257600 Carya illinoinensis HOM05D004815 ORTHO05D005742 6.5e-15 83.2 51 76.5
Lj7C524T7 Lonicera japonica HOM05D004815 ORTHO05D005742 8.5e-15 82.8 51 76.5
Prupe.2G152800 Prunus persica HOM05D004815 ORTHO05D005742 2.5e-14 81.3 51 82.4
Cfa001810 Carpinus fangiana HOM05D004815 ORTHO05D005742 4.2e-14 80.5 53 75.5
Cpa.g.sc18.178 Carica papaya HOM05D004815 ORTHO05D005742 1.6e-13 78.6 51 70.6
TAR636G2513 Trochodendron aralioides HOM05D004815 ORTHO05D005742 2.1e-13 78.2 51 72.5
QL08p050919 Quercus lobata HOM05D004815 ORTHO05D005742 4.7e-13 77.0 51 74.5
TWI23G0970 Tripterygium wilfordii HOM05D004815 ORTHO05D005742 1.4e-12 75.5 51 66.7
Lj3g0020425 Lotus japonicus HOM05D004815 ORTHO05D005742 1.8e-12 75.1 49 73.5
Duzib138G1778 Durio zibethinus HOM05D004815 ORTHO05D005742 2.3e-12 74.7 51 68.6
TAR629G0568 Trochodendron aralioides HOM05D004815 ORTHO05D005742 2.3e-12 74.7 51 68.6
Glyma.03G018700 Glycine max HOM05D004815 ORTHO05D005742 5.2e-12 73.6 49 73.5
Rhsim07G0022400 Rhododendron simsii HOM05D004815 ORTHO05D005742 5.2e-12 73.6 51 68.6
TWI59G0538 Tripterygium wilfordii HOM05D004815 ORTHO05D005742 6.8e-12 73.2 51 64.7
CAN.G170.62 Capsicum annuum HOM05D004815 ORTHO05D005742 8.8e-12 72.8 50 70.0
Potri.002G152300 Populus trichocarpa HOM05D004815 ORTHO05D005742 8.8e-12 72.8 51 62.7
vmacro13348 Vaccinium macrocarpon HOM05D004815 ORTHO05D005742 8.8e-12 72.8 51 66.7
VMungo0331G0142 Vigna mungo HOM05D004815 ORTHO05D005742 1.2e-11 72.4 48 75.0
Manes.01G263200 Manihot esculenta HOM05D004815 ORTHO05D005742 1.5e-11 72.0 51 64.7
Ciclev10023945m.g Citrus clementina HOM05D004815 ORTHO05D005742 2.0e-11 71.6 51 68.6
Lalb_Chr10g0097591 Lupinus albus HOM05D004815 ORTHO05D005742 2.0e-11 71.6 50 70.0
GSVIVG01027589001 Vitis vinifera HOM05D004815 ORTHO05D005742 2.0e-11 71.6 51 66.7
Ciclev10020702m.g Citrus clementina HOM05D004815 ORTHO05D005742 2.6e-11 71.2 51 68.6
MD02G1195700 Malus domestica HOM05D004815 ORTHO05D005742 2.6e-11 71.2 49 67.3
Eucgr.D02393 Eucalyptus grandis HOM05D004815 ORTHO05D005742 3.4e-11 70.9 51 62.7
MBI04_g28567_MAGBIO Magnolia biondii HOM05D004815 ORTHO05D005742 3.4e-11 70.9 51 64.7
Sabra02G0120600 Salix brachista HOM05D004815 ORTHO05D005742 3.4e-11 70.9 51 60.8
Gohir.D07G150500 Gossypium hirsutum HOM05D004815 ORTHO05D005742 4.4e-11 70.5 50 68.0
Gorai.001G172600 Gossypium raimondii HOM05D004815 ORTHO05D005742 4.4e-11 70.5 50 68.0
Glyma.07G080200 Glycine max HOM05D004815 ORTHO05D005742 5.7e-11 70.1 49 71.4
Phvul.010G089200 Phaseolus vulgaris HOM05D004815 ORTHO05D005742 9.8e-11 69.3 48 70.8
Actinidia09581 Actinidia chinensis HOM05D004815 ORTHO05D005742 1.3e-10 68.9 51 64.7
Lalb_Chr19g0127171 Lupinus albus HOM05D004815 ORTHO05D005742 1.3e-10 68.9 51 62.7
CANSAT56G0719 Cannabis sativa HOM05D004815 ORTHO05D005742 1.7e-10 68.6 50 64.0
Atru.chr5.381_Atru.chr5.382 Acer truncatum HOM05D004815 ORTHO05D005742 2.2e-10 68.2 48 68.8
Duzib133G0793 Durio zibethinus HOM05D004815 ORTHO05D005742 2.2e-10 68.2 51 64.7
Gohir.A07G144600 Gossypium hirsutum HOM05D004815 ORTHO05D005742 2.2e-10 68.2 50 66.0
Peaxi162Scf00021g00232 Petunia axillaris HOM05D004815 ORTHO05D005742 2.2e-10 68.2 49 69.4
Actinidia31455 Actinidia chinensis HOM05D004815 ORTHO05D005742 2.8e-10 67.8 51 62.7
Medtr8g033040 Medicago truncatula HOM05D004815 ORTHO05D005742 2.8e-10 67.8 49 63.3
TPR.G17590 Trifolium pratense HOM05D004815 ORTHO05D005742 2.8e-10 67.8 49 65.3
Ca_23774_v3 Cicer arietinum L. HOM05D004815 ORTHO05D005742 3.7e-10 67.4 49 63.3
Psat4g200880 Pisum sativum HOM05D004815 ORTHO05D005742 3.7e-10 67.4 49 63.3
BcaC02g12192 Brassica carinata HOM05D004815 ORTHO05D005742 4.8e-10 67.0 51 60.8
C04p06610 Brassica napus HOM05D004815 ORTHO05D005742 4.8e-10 67.0 51 60.8
BolC4t22283H Brassica oleracea HOM05D004815 ORTHO05D005742 4.8e-10 67.0 51 60.8
Thecc.01G370200 Theobroma cacao HOM05D004815 ORTHO05D005742 4.8e-10 67.0 51 64.7
BcaB01g03258 Brassica carinata HOM05D004815 ORTHO05D005742 6.3e-10 66.6 51 60.8
Sp4g27730 Schrenkiella parvula HOM05D004815 ORTHO05D005742 6.3e-10 66.6 51 60.8
BcaB02g09018 Brassica carinata HOM05D004815 ORTHO05D005742 8.3e-10 66.2 51 60.8
A05p05650 Brassica napus HOM05D004815 ORTHO05D005742 8.3e-10 66.2 51 60.8
BraA03t11735Z Brassica rapa HOM05D004815 ORTHO05D005742 8.3e-10 66.2 51 60.8
BraA05t19537Z Brassica rapa HOM05D004815 ORTHO05D005742 8.3e-10 66.2 51 60.8
Carub.0004s2834 Capsella rubella HOM05D004815 ORTHO05D005742 8.3e-10 66.2 51 64.7
Thhalv10001499m.g Eutrema salsugineum HOM05D004815 ORTHO05D005742 8.3e-10 66.2 51 62.7
Manes.05G040900 Manihot esculenta HOM05D004815 ORTHO05D005742 8.3e-10 66.2 51 62.7
Solyc01g091900.3 Solanum lycopersicum HOM05D004815 ORTHO05D005742 8.3e-10 66.2 49 65.3
Nitab4.5_0013229g0020 Nicotiana tabacum HOM05D004815 ORTHO05D005742 1.1e-09 65.9 49 65.3
Lalb_Chr17g0340041 Lupinus albus HOM05D004815 ORTHO05D005742 1.8e-09 65.1 49 65.3
Oeu059223.1 Olea europaea HOM05D003859 ORTHO05D004927 1.8e-09 65.1 50 68.0
Sopen01g037670 Solanum pennellii HOM05D004815 ORTHO05D005742 1.8e-09 65.1 49 63.3
PGSC0003DMG400000005 Solanum tuberosum HOM05D004815 ORTHO05D005742 1.8e-09 65.1 49 63.3
A03p25310 Brassica napus HOM05D004815 ORTHO05D005742 2.4e-09 64.7 51 60.8
Lalb_Chr01g0021231 Lupinus albus HOM05D004815 ORTHO05D005742 2.4e-09 64.7 51 58.8
TPR.G17395 Trifolium pratense HOM05D004815 ORTHO05D005742 2.4e-09 64.7 49 61.2
Aa31LG1G27160 Aethionema arabicum HOM05D004815 ORTHO05D005742 3.1e-09 64.3 51 60.8
AT2G45690 Arabidopsis thaliana HOM05D004815 ORTHO05D005742 3.1e-09 64.3 51 60.8
BcaC01g05112 Brassica carinata HOM05D004815 ORTHO05D005742 3.1e-09 64.3 51 58.8
C03p30200 Brassica napus HOM05D004815 ORTHO05D005742 3.1e-09 64.3 51 58.8
BolC3t15369H Brassica oleracea HOM05D004815 ORTHO05D005742 3.1e-09 64.3 51 58.8
CARHR140910 Cardamine hirsuta HOM05D004815 ORTHO05D005742 3.1e-09 64.3 39 69.2
SGA_v2.0_scaffold153G37057 Striga asiatica HOM05D004815 ORTHO05D005742 3.1e-09 64.3 50 64.0
THA.LOC104817269 Tarenaya hassleriana HOM05D004815 ORTHO05D005742 3.1e-09 64.3 52 61.5
Cc09_g02920 Coffea canephora HOM05D004815 ORTHO05D005742 4.1e-09 63.9 50 58.0
EL10Ac1g00976 Beta vulgaris HOM05D004815 ORTHO05D005742 5.4e-09 63.5 48 64.6
Nn1g01309 Nelumbo nucifera HOM05D004815 ORTHO05D005742 5.4e-09 63.5 46 67.4
Potri.014G078300 Populus trichocarpa HOM05D004815 ORTHO05D005742 5.4e-09 63.5 50 60.0
Cc02_g37080 Coffea canephora HOM05D004815 ORTHO05D005742 7.0e-09 63.2 50 62.0
MELO3C022521.2 Cucumis melo HOM05D004815 ORTHO05D005742 1.2e-08 62.4 48 58.3
AL4G44860 Arabidopsis lyrata HOM05D004815 ORTHO05D005742 1.6e-08 62.0 51 62.7
arahy.Tifrunner.gnm1.ann1.GZV6IQ Arachis hypogaea HOM05D004815 ORTHO05D005742 1.6e-08 62.0 49 59.2
DCAR_006900 Daucus carota HOM05D004815 ORTHO05D005742 2.0e-08 61.6 51 58.8
Glyma.04G148600 Glycine max HOM05D004815 ORTHO05D005742 2.7e-08 61.2 33 84.8
SalBow7G0216 Salvia bowleyana HOM05D004815 ORTHO05D005742 2.7e-08 61.2 50 60.0
arahy.Tifrunner.gnm1.ann1.32Q5MD Arachis hypogaea HOM05D004815 ORTHO05D005742 3.5e-08 60.8 49 57.1
Sabra14G0053800 Salix brachista HOM05D004815 ORTHO05D005742 3.5e-08 60.8 37 70.3
CDE11G0368 Ceratophyllum demersum HOM05D004815 ORTHO05D005742 4.5e-08 60.5 50 58.0
AUR62004281 Chenopodium quinoa HOM05D004815 ORTHO05D005742 4.5e-08 60.5 50 60.0
ATR0757G181 Amborella trichopoda HOM05D004815 ORTHO05D005742 5.9e-08 60.1 51 64.7
CsaV3_6G005940 Cucumis sativus L. HOM05D004815 ORTHO05D005742 7.7e-08 59.7 48 58.3
Sed0027777 Sechium edule HOM05D004815 ORTHO05D005742 7.7e-08 59.7 48 54.2
AUR62033376 Chenopodium quinoa HOM05D004815 ORTHO05D005742 1.0e-07 59.3 43 60.5
Sed0004795 Sechium edule HOM05D004815 ORTHO05D005742 1.0e-07 59.3 48 56.2
Migut.B01673 Erythranthe guttata HOM05D004815 ORTHO05D005742 2.2e-07 58.2 33 78.8
Ah.15g094120 Amaranthus hybridus HOM05D001215 ORTHO05D001387 2.9e-07 57.8 35 68.6
PGR031G2979 Punica granatum HOM05D004815 ORTHO05D005742 2.9e-07 57.8 30 86.7
SEGI_15318 Sequoiadendron giganteum HOM05D004815 ORTHO05D005742 3.8e-07 57.4 51 54.9
Solyc06g074460.4 Solanum lycopersicum HOM05D004815 ORTHO05D005742 3.8e-07 57.4 37 67.6
Peaxi162Scf00114g00211 Petunia axillaris HOM05D004815 ORTHO05D005742 1.1e-06 55.8 49 55.1
MSTRG.20784 Avicennia marina HOM05D004815 ORTHO05D005742 1.5e-06 55.5 35 71.4
unitig_749.g14360 Utricularia gibba HOM05D003518 ORTHO05D005164 1.5e-06 55.5 49 57.1
HPP92_004960 Vanilla planifolia HOM05D004815 ORTHO05D005742 1.5e-06 55.5 51 49.0
CAN.G919.13 Capsicum annuum HOM05D004815 ORTHO05D005742 1.9e-06 55.1 37 64.9
Nitab4.5_0001901g0030 Nicotiana tabacum HOM05D004815 ORTHO05D005742 1.9e-06 55.1 49 53.1
Sopen06g030930 Solanum pennellii HOM05D004815 ORTHO05D005742 1.9e-06 55.1 37 64.9
Nitab4.5_0005459g0020 Nicotiana tabacum HOM05D004815 ORTHO05D005742 2.5e-06 54.7 36 66.7
Sc02g0002260 Simmondsia chinensis HOM05D004815 ORTHO05D005742 2.5e-06 54.7 34 70.6
Lsat_1_v5_gn_7_8041 Lactuca sativa HOM05D004815 ORTHO05D005742 3.2e-06 54.3 45 60.0
ECA236G5005 Erigeron canadensis HOM05D004815 ORTHO05D005742 4.2e-06 53.9 37 64.9
Eucgr.D02397 Eucalyptus grandis HOM05D004815 ORTHO05D005742 4.2e-06 53.9 51 52.9
PSO478G4379 Papaver somniferum HOM05D004815 ORTHO05D005742 4.2e-06 53.9 51 54.9
Os02g0123200 Oryza sativa ssp. japonica HOM05D004815 ORTHO05D005742 7.2e-06 53.1 52 51.9
HanXRQChr04g0121731 Helianthus annuus HOM05D004815 ORTHO05D005742 9.5e-06 52.8 48 54.2


User provided reference genes

Program Settings