Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0350821 Rosa chinensis HOM05D003683 ORTHO05D004143 6.8e-51 203.8 107 100.0
FvH4_7g12070 Fragaria vesca HOM05D003683 ORTHO05D004143 1.9e-45 185.7 107 92.5
FAN06G0493 Fragaria x ananassa HOM05D003683 ORTHO05D004143 1.9e-45 185.7 107 92.5
FAN01G1734 Fragaria x ananassa HOM05D003683 ORTHO05D004143 2.5e-45 185.3 107 91.6
FAN06G2934 Fragaria x ananassa HOM05D003683 ORTHO05D004143 5.6e-45 184.1 107 91.6
FAN10G4272 Fragaria x ananassa HOM05D003683 ORTHO05D004143 9.5e-45 183.3 107 91.6
FAN10G1839 Fragaria x ananassa HOM05D003683 ORTHO05D004143 6.8e-43 177.2 107 90.7
Prupe.2G147300 Prunus persica HOM05D003683 ORTHO05D004143 1.9e-29 132.5 99 75.8
MD02G1201500 Malus domestica HOM05D003683 ORTHO05D004143 3.8e-25 118.2 102 73.5
MD07G1124000 Malus domestica HOM05D003683 ORTHO05D004143 6.0e-23 110.9 100 70.0
Cfa001703 Carpinus fangiana HOM05D003683 ORTHO05D004143 2.5e-21 105.5 102 63.7
Dinv32390 Davidia involucrata HOM05D003683 ORTHO05D004143 8.1e-20 100.5 104 59.6
Potri.002G149600 Populus trichocarpa HOM05D003683 ORTHO05D004143 1.8e-19 99.4 98 63.3
Dinv43725 Davidia involucrata HOM05D003683 ORTHO05D004143 4.0e-19 98.2 99 60.6
Potri.014G071200 Populus trichocarpa HOM05D003683 ORTHO05D004143 7.6e-18 94.0 102 58.8
CiPaw.01G260700 Carya illinoinensis HOM05D003683 ORTHO05D004143 3.2e-16 88.6 102 61.8
TAR629G0669 Trochodendron aralioides HOM05D003683 ORTHO05D004143 2.7e-15 85.5 102 52.9
TAR629G3017 Trochodendron aralioides HOM05D003683 ORTHO05D004143 7.9e-15 84.0 102 52.0
Manes.01G264900 Manihot esculenta HOM05D003683 ORTHO05D004143 1.0e-14 83.6 110 51.8
Thecc.01G374500 Theobroma cacao HOM05D003683 ORTHO05D004143 1.3e-14 83.2 103 53.4
CAN.G630.45 Capsicum annuum HOM05D003683 ORTHO05D004143 3.0e-14 82.0 107 50.5
CiPaw.02G166400 Carya illinoinensis HOM05D003683 ORTHO05D004143 1.1e-13 80.1 93 55.9
COL.COLO4_12571 Corchorus olitorius HOM05D003683 ORTHO05D004143 1.1e-13 80.1 103 51.5
Duzib133G0707 Durio zibethinus HOM05D003683 ORTHO05D004143 1.1e-13 80.1 104 54.8
Lalb_Chr03g0039121 Lupinus albus HOM05D003683 ORTHO05D004143 1.1e-13 80.1 115 44.3
Sabra02G0118400 Salix brachista HOM05D003683 ORTHO05D004143 1.5e-13 79.7 98 50.0
Hma1.2p1_3528F.1_g336600 Hydrangea macrophylla HOM05D003683 ORTHO05D004143 1.9e-13 79.3 107 54.2
Sopen08g003530 Solanum pennellii HOM05D003683 ORTHO05D004143 1.9e-13 79.3 94 55.3
ClCG05G002130 Citrullus lanatus HOM05D003683 ORTHO05D004143 2.5e-13 79.0 115 50.4
Dinv37740 Davidia involucrata HOM05D003683 ORTHO05D004143 2.5e-13 79.0 94 50.0
Lj3g0025203 Lotus japonicus HOM05D003683 ORTHO05D004143 2.5e-13 79.0 106 47.2
Sed0003331 Sechium edule HOM05D003683 ORTHO05D004143 3.3e-13 78.6 97 55.7
TAR375G1063 Trochodendron aralioides HOM05D003683 ORTHO05D004143 3.3e-13 78.6 113 51.3
Hma1.2p1_0138F.1_g062970 Hydrangea macrophylla HOM05D003683 ORTHO05D004143 4.3e-13 78.2 92 52.2
CSS0019244 Camellia sinensis var. sinensis HOM05D003683 ORTHO05D004143 7.4e-13 77.4 92 54.3
CiPaw.11G145300 Carya illinoinensis HOM05D003683 ORTHO05D004143 9.6e-13 77.0 106 50.0
PGSC0003DMG400012487 Solanum tuberosum HOM05D003683 ORTHO05D004143 9.6e-13 77.0 94 52.1
TWI23G1078 Tripterygium wilfordii HOM05D003683 ORTHO05D004143 1.3e-12 76.6 101 55.4
Dinv39058 Davidia involucrata HOM05D003683 ORTHO05D004143 1.6e-12 76.3 97 51.5
CSS0021060 Camellia sinensis var. sinensis HOM05D003683 ORTHO05D004143 2.1e-12 75.9 101 44.6
Hma1.2p1_1793F.1_g302590 Hydrangea macrophylla HOM05D003683 ORTHO05D004143 2.8e-12 75.5 106 52.8
Atru.chr9.1472 Acer truncatum HOM05D003683 ORTHO05D004143 3.7e-12 75.1 98 50.0
Glyma.18G221800 Glycine max HOM05D003683 ORTHO05D004143 3.7e-12 75.1 103 50.5
Aqoxy7G00590 Aquilegia oxysepala HOM05D003683 ORTHO05D004143 4.8e-12 74.7 100 50.0
A03p25230 Brassica napus HOM05D003683 ORTHO05D004143 4.8e-12 74.7 96 51.0
Haze_09035 Corylus avellana HOM05D003683 ORTHO05D004143 4.8e-12 74.7 109 50.5
QL12p015617 Quercus lobata HOM05D003683 ORTHO05D004143 8.2e-12 73.9 92 51.1
Cfa012041 Carpinus fangiana HOM05D003683 ORTHO05D004143 1.1e-11 73.6 109 50.5
CiPaw.12G102800 Carya illinoinensis HOM05D003683 ORTHO05D004143 1.1e-11 73.6 95 47.4
MELO3C006178.2 Cucumis melo HOM05D003683 ORTHO05D004143 1.1e-11 73.6 119 47.9
Lj2A204T52 Lonicera japonica HOM05D003683 ORTHO05D004143 1.4e-11 73.2 91 53.8
Peaxi162Scf00021g00139 Petunia axillaris HOM05D003683 ORTHO05D004143 1.4e-11 73.2 109 49.5
BcaC01g05122 Brassica carinata HOM05D003683 ORTHO05D004143 1.8e-11 72.8 96 52.1
BcaC01g05135 Brassica carinata HOM05D003683 ORTHO05D004143 1.8e-11 72.8 96 52.1
EL10Ac5g12652 Beta vulgaris HOM05D003683 ORTHO05D004143 2.4e-11 72.4 107 45.8
BcaB01g03267 Brassica carinata HOM05D003683 ORTHO05D004143 2.4e-11 72.4 96 51.0
PGSC0003DMG400003921 Solanum tuberosum HOM05D003683 ORTHO05D004143 2.4e-11 72.4 108 45.4
vmacro00217 Vaccinium macrocarpon HOM05D003683 ORTHO05D004143 2.4e-11 72.4 92 52.2
CsaV3_3G009560 Cucumis sativus L. HOM05D003683 ORTHO05D004143 3.1e-11 72.0 119 47.9
Phvul.008G075300 Phaseolus vulgaris HOM05D003683 ORTHO05D004143 3.1e-11 72.0 106 46.2
C03p30100 Brassica napus HOM05D003683 ORTHO05D004143 4.0e-11 71.6 96 51.0
Peaxi162Scf00102g01336 Petunia axillaris HOM05D003683 ORTHO05D004143 5.3e-11 71.2 93 50.5
A05p05480 Brassica napus HOM05D003683 ORTHO05D004143 6.9e-11 70.9 96 52.1
BraA05t19518Z Brassica rapa HOM05D003683 ORTHO05D004143 6.9e-11 70.9 96 52.1
Sabra01G0087900 Salix brachista HOM05D003683 ORTHO05D004143 6.9e-11 70.9 92 54.3
Actinidia14483 Actinidia chinensis HOM05D003683 ORTHO05D004143 9.0e-11 70.5 94 48.9
Duzib138G1197 Durio zibethinus HOM05D003683 ORTHO05D004143 9.0e-11 70.5 113 46.9
Potri.003G117200 Populus trichocarpa HOM05D003683 ORTHO05D004143 9.0e-11 70.5 92 55.4
VMungo1383G1500 Vigna mungo HOM05D003683 ORTHO05D004143 9.0e-11 70.5 104 46.2
BcaC02g12206 Brassica carinata HOM05D003683 ORTHO05D004143 1.2e-10 70.1 96 52.1
C04p06420 Brassica napus HOM05D003683 ORTHO05D004143 1.2e-10 70.1 96 52.1
BolC4t22265H Brassica oleracea HOM05D003683 ORTHO05D004143 1.2e-10 70.1 96 52.1
Oeu064712.1 Olea europaea HOM05D003683 ORTHO05D004143 1.2e-10 70.1 97 53.6
GSVIVG01019925001 Vitis vinifera HOM05D003683 ORTHO05D004143 1.2e-10 70.1 92 48.9
Gorai.008G241000 Gossypium raimondii HOM05D003683 ORTHO05D004143 2.6e-10 68.9 93 47.3
Oeu056803.1 Olea europaea HOM05D003683 ORTHO05D004143 2.6e-10 68.9 96 50.0
Phvul.010G085600 Phaseolus vulgaris HOM05D003683 ORTHO05D004143 2.6e-10 68.9 105 44.8
Sopen08g028050 Solanum pennellii HOM05D003683 ORTHO05D004143 3.4e-10 68.6 108 43.5
BcaB02g08997 Brassica carinata HOM05D003683 ORTHO05D004143 4.5e-10 68.2 96 49.0
Eucgr.E00491 Eucalyptus grandis HOM05D003683 ORTHO05D004143 4.5e-10 68.2 92 47.8
Gohir.D11G086200 Gossypium hirsutum HOM05D003683 ORTHO05D004143 5.8e-10 67.8 82 54.9
Hund11555 Selenicereus undatus HOM05D003683 ORTHO05D004143 5.8e-10 67.8 73 54.8
CsaV3_5G003580 Cucumis sativus L. HOM05D003683 ORTHO05D004143 7.6e-10 67.4 92 46.7
Thhalv10001694m.g Eutrema salsugineum HOM05D003683 ORTHO05D004143 7.6e-10 67.4 92 53.3
Glyma.03G022200 Glycine max HOM05D003683 ORTHO05D004143 7.6e-10 67.4 113 43.4
Gohir.A03G010200 Gossypium hirsutum HOM05D003683 ORTHO05D004143 7.6e-10 67.4 92 47.8
Gohir.A12G222400 Gossypium hirsutum HOM05D003683 ORTHO05D004143 7.6e-10 67.4 93 47.3
Gorai.003G167900 Gossypium raimondii HOM05D003683 ORTHO05D004143 7.6e-10 67.4 93 47.3
CARHR140640 Cardamine hirsuta HOM05D003683 ORTHO05D004143 1.0e-09 67.0 92 53.3
Sp4g27480 Schrenkiella parvula HOM05D003683 ORTHO05D004143 1.0e-09 67.0 92 53.3
MBI04_g32262_MAGBIO Magnolia biondii HOM05D003683 ORTHO05D004143 1.3e-09 66.6 96 47.9
Hund14673 Selenicereus undatus HOM05D003683 ORTHO05D004143 1.3e-09 66.6 93 47.3
Solyc08g079690.4 Solanum lycopersicum HOM05D003683 ORTHO05D004143 1.3e-09 66.6 94 47.9
Gohir.D03G159600 Gossypium hirsutum HOM05D003683 ORTHO05D004143 1.7e-09 66.2 92 47.8
Gohir.D12G224900 Gossypium hirsutum HOM05D003683 ORTHO05D004143 2.2e-09 65.9 93 46.2
PGR042G1830 Punica granatum HOM05D003683 ORTHO05D004143 2.2e-09 65.9 99 43.4
BcaB02g08986 Brassica carinata HOM05D003683 ORTHO05D004143 2.9e-09 65.5 94 51.1
Glyma.09G268100 Glycine max HOM05D003683 ORTHO05D004143 2.9e-09 65.5 103 42.7
Manes.02G031900 Manihot esculenta HOM05D003683 ORTHO05D004143 2.9e-09 65.5 92 48.9
TWI60G0451 Tripterygium wilfordii HOM05D003683 ORTHO05D004143 2.9e-09 65.5 98 44.9
AL4G44620 Arabidopsis lyrata HOM05D003683 ORTHO05D004143 3.8e-09 65.1 92 53.3
Glyma.01G144700 Glycine max HOM05D003683 ORTHO05D004143 3.8e-09 65.1 113 42.5
Medtr7g075120 Medicago truncatula HOM05D003683 ORTHO05D004143 3.8e-09 65.1 95 46.3
Rhsim11G0007500 Rhododendron simsii HOM05D003683 ORTHO05D004143 3.8e-09 65.1 93 49.5
AUR62017361 Chenopodium quinoa HOM05D003683 ORTHO05D004143 4.9e-09 64.7 72 54.2
MELO3C005596.2 Cucumis melo HOM05D003683 ORTHO05D004143 4.9e-09 64.7 92 45.7
Manes.01G071300 Manihot esculenta HOM05D003683 ORTHO05D004143 4.9e-09 64.7 92 47.8
BcaB02g07396 Brassica carinata HOM05D003683 ORTHO05D004143 6.5e-09 64.3 98 48.0
COL.COLO4_23839 Corchorus olitorius HOM05D003683 ORTHO05D004143 6.5e-09 64.3 93 48.4
DCAR_008443 Daucus carota HOM05D003683 ORTHO05D004143 6.5e-09 64.3 93 43.0
AUR62010534 Chenopodium quinoa HOM05D003683 ORTHO05D004143 8.4e-09 63.9 72 52.8
GSVIVG01027629001 Vitis vinifera HOM05D003683 ORTHO05D004143 8.4e-09 63.9 97 52.6
A04p01350 Brassica napus HOM05D003683 ORTHO05D004143 1.1e-08 63.5 92 47.8
Carub.0004s2806 Capsella rubella HOM05D003683 ORTHO05D004143 1.1e-08 63.5 91 52.7
A04p33850 Brassica napus HOM05D003683 ORTHO05D004143 1.4e-08 63.2 92 47.8
BraA04t18845Z Brassica rapa HOM05D003683 ORTHO05D004143 1.4e-08 63.2 92 47.8
Gohir.A11G081600 Gossypium hirsutum HOM05D003683 ORTHO05D004143 1.4e-08 63.2 82 52.4
Lsat_1_v5_gn_6_10220 Lactuca sativa HOM05D003683 ORTHO05D004143 1.4e-08 63.2 100 45.0
Nn4g26435 Nelumbo nucifera HOM05D003683 ORTHO05D004143 1.4e-08 63.2 92 51.1
Thhalv10006309m.g Eutrema salsugineum HOM05D003683 ORTHO05D004143 1.9e-08 62.8 96 44.8
Thecc.03G264300 Theobroma cacao HOM05D003683 ORTHO05D004143 1.9e-08 62.8 93 49.5
AT2G45450 Arabidopsis thaliana HOM05D003683 ORTHO05D004143 2.5e-08 62.4 92 50.0
Gorai.008G114600 Gossypium raimondii HOM05D003683 ORTHO05D004143 2.5e-08 62.4 86 47.7
BcaC02g07091 Brassica carinata HOM05D003683 ORTHO05D004143 3.2e-08 62.0 92 44.6
C04p71580 Brassica napus HOM05D003683 ORTHO05D004143 3.2e-08 62.0 92 44.6
BolC4t28663H Brassica oleracea HOM05D003683 ORTHO05D004143 3.2e-08 62.0 92 44.6
CARHR171270 Cardamine hirsuta HOM05D003683 ORTHO05D004143 3.2e-08 62.0 71 54.9
ECA233G3941 Erigeron canadensis HOM05D003683 ORTHO05D004143 3.2e-08 62.0 72 52.8
Gohir.A12G102100 Gossypium hirsutum HOM05D003683 ORTHO05D004143 4.2e-08 61.6 104 42.3
Potri.001G114900 Populus trichocarpa HOM05D003683 ORTHO05D004143 4.2e-08 61.6 92 51.1
Aa31LG1G26950 Aethionema arabicum HOM05D003683 ORTHO05D004143 5.5e-08 61.2 93 46.2
BcaC02g10196 Brassica carinata HOM05D003683 ORTHO05D004143 7.1e-08 60.8 94 47.9
Carub.0005s2764 Capsella rubella HOM05D003683 ORTHO05D004143 7.1e-08 60.8 102 45.1
Sp5g02360 Schrenkiella parvula HOM05D003683 ORTHO05D004143 7.1e-08 60.8 104 43.3
MSTRG.13795 Avicennia marina HOM05D003683 ORTHO05D004143 1.2e-07 60.1 94 48.9
Ciclev10023705m.g Citrus clementina HOM05D003683 ORTHO05D004143 1.2e-07 60.1 94 41.5
Nitab4.5_0006122g0030 Nicotiana tabacum HOM05D003683 ORTHO05D004143 1.6e-07 59.7 101 40.6
PGSC0003DMG400012753 Solanum tuberosum HOM05D003683 ORTHO05D004143 1.6e-07 59.7 106 41.5
ATR0820G297 Amborella trichopoda HOM05D003360 ORTHO05D003759 2.1e-07 59.3 45 68.9
BcaB06g29422 Brassica carinata HOM05D003683 ORTHO05D004143 2.1e-07 59.3 92 46.7
HanXRQChr17g0557021 Helianthus annuus HOM05D003683 ORTHO05D004143 2.1e-07 59.3 94 45.7
Cc02_g36550 Coffea canephora HOM05D003683 ORTHO05D004143 2.7e-07 58.9 96 42.7
Lsat_1_v5_gn_4_37980 Lactuca sativa HOM05D003683 ORTHO05D004143 2.7e-07 58.9 86 48.8
ClCG01G003480 Citrullus lanatus HOM05D003683 ORTHO05D004143 3.5e-07 58.5 92 42.4
HanXRQChr16g0521651 Helianthus annuus HOM05D003683 ORTHO05D004143 4.6e-07 58.2 100 45.0
Sabra03G0081600 Salix brachista HOM05D003683 ORTHO05D004143 4.6e-07 58.2 92 46.7
AT3G60890 Arabidopsis thaliana HOM05D003683 ORTHO05D004143 6.0e-07 57.8 79 46.8
Gohir.D12G105300 Gossypium hirsutum HOM05D003683 ORTHO05D004143 6.0e-07 57.8 87 44.8
Sed0004645 Sechium edule HOM05D003683 ORTHO05D004143 7.9e-07 57.4 92 43.5
Solyc01g091490.3 Solanum lycopersicum HOM05D003683 ORTHO05D004143 7.9e-07 57.4 90 45.6
ATR0810G009 Amborella trichopoda HOM05D003683 ORTHO05D004143 1.3e-06 56.6 93 41.9
C04p31700 Brassica napus HOM05D003683 ORTHO05D004143 1.8e-06 56.2 56 58.9
Manes.05G044050 Manihot esculenta HOM05D003683 ORTHO05D004143 1.8e-06 56.2 59 57.6
SalBow6G6235 Salvia bowleyana HOM05D003683 ORTHO05D004143 1.8e-06 56.2 63 57.1
BolC4t24719H Brassica oleracea HOM05D003683 ORTHO05D004143 2.3e-06 55.8 43 67.4
BraA04t15855Z Brassica rapa HOM05D003683 ORTHO05D004143 2.3e-06 55.8 43 67.4
THA.LOC104814010 Tarenaya hassleriana HOM05D003683 ORTHO05D004143 2.3e-06 55.8 96 41.7
Cpa.g.sc29.63 Carica papaya HOM05D003683 ORTHO05D004143 3.0e-06 55.5 41 73.2
CDE02G3545 Ceratophyllum demersum HOM05D003683 ORTHO05D004143 3.0e-06 55.5 67 47.8
Actinidia02072 Actinidia chinensis HOM05D003683 ORTHO05D004143 3.9e-06 55.1 84 45.2
AL5G43210 Arabidopsis lyrata HOM05D003683 ORTHO05D004143 3.9e-06 55.1 105 42.9
Lsat_1_v5_gn_6_24141 Lactuca sativa HOM05D003360 ORTHO05D003759 3.9e-06 55.1 46 67.4
C06p26960 Brassica napus HOM05D003683 ORTHO05D004143 6.7e-06 54.3 101 40.6
Cc08_g13490 Coffea canephora HOM05D003683 ORTHO05D004143 6.7e-06 54.3 78 46.2
Nitab4.5_0011654g0010 Nicotiana tabacum HOM05D003683 ORTHO05D004143 6.7e-06 54.3 93 43.0
DCAR_008565 Daucus carota HOM05D003683 ORTHO05D004143 8.7e-06 53.9 65 52.3


User provided reference genes

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