Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0350591 Rosa chinensis HOM05D006036 ORTHO05D007736 1.3e-131 473.0 227 100.0
FAN10G3538 Fragaria x ananassa HOM05D006036 ORTHO05D007736 2.6e-116 422.2 227 92.5
FvH4_7g11910 Fragaria vesca HOM05D006036 ORTHO05D007736 8.3e-115 417.2 227 92.5
FAN03G0372 Fragaria x ananassa HOM05D006036 ORTHO05D007736 1.6e-113 412.9 227 90.7
FAN01G0425 Fragaria x ananassa HOM05D006036 ORTHO05D007736 7.8e-113 410.6 227 90.7
Prupe.2G145700 Prunus persica HOM05D006036 ORTHO05D007736 3.2e-98 362.1 227 80.6
MD02G1204100 Malus domestica HOM05D006036 ORTHO05D007736 2.3e-96 355.9 227 79.7
Duzib133G1287 Durio zibethinus HOM05D006036 ORTHO05D007736 2.6e-92 342.4 227 74.0
Thecc.01G376100 Theobroma cacao HOM05D006036 ORTHO05D007736 2.6e-92 342.4 229 74.2
TWI14G1308 Tripterygium wilfordii HOM05D006036 ORTHO05D007736 1.7e-91 339.7 227 74.9
Gohir.A08G134500 Gossypium hirsutum HOM05D006036 ORTHO05D007736 1.4e-90 336.7 227 74.0
CiPaw.01G261900 Carya illinoinensis HOM05D006036 ORTHO05D007736 1.3e-88 330.1 227 73.6
Cfa001720 Carpinus fangiana HOM05D006036 ORTHO05D007736 1.7e-88 329.7 227 74.0
QL08p052466 Quercus lobata HOM05D006036 ORTHO05D007736 2.3e-88 329.3 228 73.7
CANSAT56G2189 Cannabis sativa HOM05D006036 ORTHO05D007736 8.7e-88 327.4 227 72.7
Haze_16816 Corylus avellana HOM05D006036 ORTHO05D007736 1.1e-87 327.0 227 74.4
Glyma.01G142900 Glycine max HOM05D006036 ORTHO05D007736 1.3e-86 323.6 232 70.3
Manes.05G045200 Manihot esculenta HOM05D006036 ORTHO05D007736 1.6e-86 323.2 227 71.8
PGR042G0035 Punica granatum HOM05D006036 ORTHO05D007736 2.1e-86 322.8 233 67.8
Cpa.g.sc349.4 Carica papaya HOM05D006036 ORTHO05D007736 2.4e-85 319.3 230 69.1
Lj3g0008791 Lotus japonicus HOM05D006036 ORTHO05D007736 2.4e-85 319.3 228 69.7
Glyma.03G023900 Glycine max HOM05D006036 ORTHO05D007736 1.5e-84 316.6 232 69.4
CsaV3_6G006160 Cucumis sativus L. HOM05D006036 ORTHO05D007736 4.5e-84 315.1 235 67.7
Glyma.14G070200 Glycine max HOM05D006036 ORTHO05D007736 1.7e-83 313.2 232 69.0
Potri.002G148400 Populus trichocarpa HOM05D006036 ORTHO05D007736 3.8e-83 312.0 227 69.2
Nn1g01232 Nelumbo nucifera HOM05D006036 ORTHO05D007736 6.4e-83 311.2 228 70.2
EL10Ac1g00899 Beta vulgaris HOM05D006036 ORTHO05D007736 1.1e-82 310.5 234 68.4
FAN10G0738 Fragaria x ananassa HOM05D006036 ORTHO05D007736 1.1e-82 310.5 151 98.0
Sed0014119 Sechium edule HOM05D006036 ORTHO05D007736 1.1e-82 310.5 231 66.7
Sabra02G0117300 Salix brachista HOM05D006036 ORTHO05D007736 1.9e-82 309.7 227 68.7
Sabra02G0115600 Salix brachista HOM05D006036 ORTHO05D007736 5.4e-82 308.1 227 68.3
Eucgr.E01417 Eucalyptus grandis HOM05D006036 ORTHO05D007736 7.1e-82 307.8 187 79.1
Psat7g231640 Pisum sativum HOM05D006036 ORTHO05D007736 7.1e-82 307.8 222 68.0
AUR62013628 Chenopodium quinoa HOM05D006036 ORTHO05D007736 9.3e-82 307.4 235 67.7
Lalb_Chr07g0189801 Lupinus albus HOM05D006036 ORTHO05D007736 1.2e-81 307.0 227 67.4
Sed0006891 Sechium edule HOM05D006036 ORTHO05D007736 3.5e-81 305.4 231 65.8
Ah.16g109830 Amaranthus hybridus HOM05D006036 ORTHO05D007736 6.0e-81 304.7 231 67.1
Medtr4g023550 Medicago truncatula HOM05D006036 ORTHO05D007736 6.0e-81 304.7 221 67.0
Phvul.010G084400 Phaseolus vulgaris HOM05D006036 ORTHO05D007736 1.3e-80 303.5 228 67.5
Dinv32378 Davidia involucrata HOM05D006036 ORTHO05D007736 3.0e-80 302.4 211 72.0
Atru.chr5.310 Acer truncatum HOM05D006036 ORTHO05D007736 6.7e-80 301.2 209 73.7
Ca_03013_v3 Cicer arietinum L. HOM05D006036 ORTHO05D007736 6.7e-80 301.2 212 68.9
Actinidia12688 Actinidia chinensis HOM05D006036 ORTHO05D007736 1.9e-79 299.7 228 69.7
Glyma.08G286100 Glycine max HOM05D006036 ORTHO05D007736 3.3e-79 298.9 220 66.4
Rhsim01G0147400 Rhododendron simsii HOM05D006036 ORTHO05D007736 3.3e-79 298.9 234 67.9
Hund17020 Selenicereus undatus HOM05D006036 ORTHO05D007736 7.4e-79 297.7 235 64.7
Sc02g0002580 Simmondsia chinensis HOM05D006036 ORTHO05D007736 1.3e-78 297.0 187 74.9
TPR.G9852 Trifolium pratense HOM05D006036 ORTHO05D007736 1.3e-78 297.0 177 78.0
Oeu037915.1 Olea europaea HOM05D006036 ORTHO05D007736 1.6e-78 296.6 194 72.7
SalBow5G3583 Salvia bowleyana HOM05D006036 ORTHO05D007736 4.8e-78 295.0 231 64.1
GSVIVG01027612001 Vitis vinifera HOM05D006036 ORTHO05D007736 4.8e-78 295.0 228 65.4
C08p35770 Brassica napus HOM05D006036 ORTHO05D007736 1.8e-77 293.1 227 68.3
BcaC07g40602 Brassica carinata HOM05D006036 ORTHO05D007736 2.4e-77 292.7 227 68.3
BolC8t51167H Brassica oleracea HOM05D006036 ORTHO05D007736 3.1e-77 292.4 227 68.3
AT3G60810 Arabidopsis thaliana HOM05D006036 ORTHO05D007736 6.9e-77 291.2 227 67.0
Sp5g02440 Schrenkiella parvula HOM05D006036 ORTHO05D007736 6.9e-77 291.2 234 65.8
Carub.0005s2756 Capsella rubella HOM05D006036 ORTHO05D007736 9.0e-77 290.8 227 67.8
Solyc01g091360.4 Solanum lycopersicum HOM05D006036 ORTHO05D007736 9.0e-77 290.8 191 73.3
SalBow5G0783 Salvia bowleyana HOM05D006036 ORTHO05D007736 1.2e-76 290.4 231 63.2
AL5G43130 Arabidopsis lyrata HOM05D006036 ORTHO05D007736 1.5e-76 290.0 229 67.2
A09p53070 Brassica napus HOM05D006036 ORTHO05D007736 1.5e-76 290.0 227 67.8
MSTRG.4890 Avicennia marina HOM05D006036 ORTHO05D007736 2.6e-76 289.3 234 63.7
Thhalv10006234m.g Eutrema salsugineum HOM05D006036 ORTHO05D007736 3.4e-76 288.9 230 67.0
CARHR171200 Cardamine hirsuta HOM05D006036 ORTHO05D007736 4.5e-76 288.5 230 67.0
THA.LOC104802443 Tarenaya hassleriana HOM05D006036 ORTHO05D007736 5.8e-76 288.1 230 65.7
HanXRQChr16g0520241 Helianthus annuus HOM05D006036 ORTHO05D007736 7.6e-76 287.7 178 77.0
Sopen01g037100 Solanum pennellii HOM05D006036 ORTHO05D007736 7.6e-76 287.7 191 72.3
unitig_8.g4983 Utricularia gibba HOM05D006036 ORTHO05D007736 1.3e-75 287.0 177 76.8
BcaC07g42642 Brassica carinata HOM05D006036 ORTHO05D007736 1.7e-75 286.6 227 66.1
Cc02_g36690 Coffea canephora HOM05D006036 ORTHO05D007736 1.7e-75 286.6 227 64.8
DCAR_031531 Daucus carota HOM05D006036 ORTHO05D007736 2.9e-75 285.8 199 72.4
ECA234G4399 Erigeron canadensis HOM05D006036 ORTHO05D007736 2.9e-75 285.8 188 72.3
arahy.Tifrunner.gnm1.ann1.B3VI1A Arachis hypogaea HOM05D006036 ORTHO05D007736 3.8e-75 285.4 176 76.7
Aqoxy7G00627 Aquilegia oxysepala HOM05D006036 ORTHO05D007736 8.4e-75 284.3 187 71.7
CDE02G2016 Ceratophyllum demersum HOM05D006036 ORTHO05D007736 5.5e-74 281.6 176 76.1
Lsat_1_v5_gn_4_40940 Lactuca sativa HOM05D006036 ORTHO05D007736 7.1e-74 281.2 176 75.0
Lj9A569G50 Lonicera japonica HOM05D006036 ORTHO05D007736 9.3e-74 280.8 211 68.2
PGSC0003DMG400012774 Solanum tuberosum HOM05D006036 ORTHO05D007736 2.7e-73 279.3 191 70.2
MBI04_g35276_MAGBIO Magnolia biondii HOM05D006036 ORTHO05D007736 6.0e-73 278.1 211 64.9
Aa31LG10G15050 Aethionema arabicum HOM05D006036 ORTHO05D007736 1.3e-72 276.9 227 63.9
BraA09t40733Z Brassica rapa HOM05D006036 ORTHO05D007736 6.7e-72 274.6 227 66.1
Ciclev10022362m.g Citrus clementina HOM05D006036 ORTHO05D007736 1.5e-71 273.5 222 64.4
SEGI_01363 Sequoiadendron giganteum HOM05D006036 ORTHO05D007736 1.6e-70 270.0 173 73.4
CSS0022013 Camellia sinensis var. sinensis HOM05D006036 ORTHO05D007736 3.1e-69 265.8 227 62.1
CSS0011162 Camellia sinensis var. sinensis HOM05D006036 ORTHO05D007736 1.2e-68 263.8 227 62.1
ATR0810G113 Amborella trichopoda HOM05D006036 ORTHO05D007736 3.4e-68 262.3 160 78.1
AUR62004220 Chenopodium quinoa HOM05D006036 ORTHO05D007736 3.4e-68 262.3 173 71.7
Gohir.D08G155400 Gossypium hirsutum HOM05D006036 ORTHO05D007736 2.9e-67 259.2 183 71.6
Medtr7g074920 Medicago truncatula HOM05D006036 ORTHO05D007736 3.8e-67 258.8 185 65.9
VMungo0251G0926 Vigna mungo HOM05D006036 ORTHO05D007736 3.8e-67 258.8 229 61.1
vmacro21009 Vaccinium macrocarpon HOM05D006036 ORTHO05D007736 3.2e-66 255.8 210 65.2
Zm00001eb210410 Zea mays HOM05D006036 ORTHO05D007736 5.5e-66 255.0 180 64.4
arahy.Tifrunner.gnm1.ann1.Y8TVDJ Arachis hypogaea HOM05D006036 ORTHO05D007736 3.5e-65 252.3 156 76.3
VMungo0331G0186 Vigna mungo HOM05D006036 ORTHO05D007736 4.6e-65 251.9 256 55.1
Os03g0858700 Oryza sativa ssp. japonica HOM05D006036 ORTHO05D007736 6.1e-65 251.5 178 65.2
vmacro21008 Vaccinium macrocarpon HOM05D006036 ORTHO05D007736 5.7e-63 245.0 154 77.9
Nitab4.5_0005372g0020 Nicotiana tabacum HOM05D006036 ORTHO05D007736 1.3e-62 243.8 229 56.8
AagrBONN_evm.TU.Sc2ySwM_117.1558 Anthoceros agrestis HOM05D006036 ORTHO05D007736 5.3e-61 238.4 169 66.9
Mapoly0007s0216 Marchantia polymorpha HOM05D006036 ORTHO05D007736 6.9e-61 238.0 218 52.8
Pp3c23_9860 Physcomitrium patens HOM05D006036 ORTHO05D007736 4.5e-60 235.3 199 59.3
PSO782G0421 Papaver somniferum HOM05D006036 ORTHO05D007736 3.2e-58 229.2 232 54.3
Hma1.2p1_1122F.1_g259290 Hydrangea macrophylla HOM05D006036 ORTHO05D007736 5.5e-58 228.4 174 64.9
PSO478G2400 Papaver somniferum HOM05D006036 ORTHO05D007736 2.1e-57 226.5 236 54.2
COL.COLO4_12549 Corchorus olitorius HOM05D006036 ORTHO05D007736 4.6e-57 225.3 135 79.3
SMO143G0045 Selaginella moellendorffii HOM05D006036 ORTHO05D007736 3.3e-55 219.2 151 67.5
ClCG06G000370 Citrullus lanatus HOM05D006036 ORTHO05D007736 6.3e-54 214.9 231 52.4
SGA_v2.0_scaffold153G37014 Striga asiatica HOM05D006036 ORTHO05D001464 6.7e-48 194.9 183 54.1
Nitab4.5_0000457g0290 Nicotiana tabacum HOM05D006036 ORTHO05D007736 2.0e-47 193.4 211 51.2
FAN06G1700 Fragaria x ananassa HOM05D006036 ORTHO05D007736 1.8e-45 186.8 95 96.8
Cre11.g468750 Chlamydomonas reinhardtii HOM05D006036 ORTHO05D007736 5.3e-45 185.3 174 52.9
MELO3C035247.2 Cucumis melo HOM05D006036 ORTHO05D007736 2.0e-44 183.3 115 75.7
Glyma.09G269100 Glycine max HOM05D006036 ORTHO05D007736 1.0e-40 171.0 125 68.0
Peaxi162Scf00021g01720 Petunia axillaris HOM05D006036 ORTHO05D007736 1.0e-40 171.0 111 74.8
CAN.G388.12 Capsicum annuum HOM05D006036 ORTHO05D007736 5.3e-37 158.7 109 68.8
FAN06G2896 Fragaria x ananassa HOM05D006036 ORTHO05D007736 4.5e-36 155.6 76 97.4
Lalb_Chr03g0039561 Lupinus albus HOM05D006036 ORTHO05D007736 1.7e-35 153.7 126 60.3
Migut.N01635 Erythranthe guttata HOM05D006036 ORTHO05D007736 3.6e-33 146.0 102 67.6
MELO3C034959.2 Cucumis melo HOM05D006036 ORTHO05D007736 1.4e-32 144.1 119 62.2
Ca_07819_v3 Cicer arietinum L. HOM05D006036 ORTHO05D007736 3.0e-32 142.9 95 70.5
Ca_19909_v3 Cicer arietinum L. HOM05D006036 ORTHO05D007736 3.4e-31 139.4 90 66.7
Ciclev10033315m.g Citrus clementina HOM05D006036 ORTHO05D007736 3.4e-31 139.4 142 55.6
CBR_g54966 Chara braunii HOM05D006036 ORTHO05D007736 4.5e-28 129.0 83 72.3
MCO13G087 Micromonas commoda HOM05D006036 ORTHO05D007736 1.9e-26 123.6 159 44.0
Gorai.007G091200 Gossypium raimondii HOM05D001611 ORTHO05D001464 8.0e-25 118.2 95 64.2
Gohir.D11G085366 Gossypium hirsutum HOM05D001611 ORTHO05D001464 1.5e-23 114.0 95 62.1
Psat3g116040 Pisum sativum HOM05D006036 ORTHO05D007736 2.4e-21 106.7 75 62.7
Gorai.004G161600 Gossypium raimondii HOM05D006036 ORTHO05D007736 5.4e-21 105.5 92 59.8
Lalb_Chr03g0039551 Lupinus albus HOM05D006036 ORTHO05D007736 2.7e-20 103.2 80 58.8
arahy.Tifrunner.gnm1.ann1.WD24C8 Arachis hypogaea HOM05D006036 ORTHO05D007736 2.3e-19 100.1 62 75.8
Lj1g0011795 Lotus japonicus HOM05D006036 ORTHO05D007736 1.1e-18 97.8 54 81.5
arahy.Tifrunner.gnm1.ann1.BW32E7 Arachis hypogaea HOM05D006036 ORTHO05D000587 8.9e-16 88.2 59 71.2


User provided reference genes

Program Settings