Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0350511 Rosa chinensis HOM05D005918 ORTHO05D008619 3.2e-144 515.0 250 100.0
MD01G1113200 Malus domestica HOM05D005918 ORTHO05D008619 2.1e-42 176.8 247 43.3
MD09G1101600 Malus domestica HOM05D005918 ORTHO05D008619 2.7e-42 176.4 258 45.0
RcHm_v2.0_Chr2g0117831 Rosa chinensis HOM05D005918 ORTHO05D008619 7.4e-40 168.3 243 45.3
MD17G1084600 Malus domestica HOM05D005918 ORTHO05D008619 2.8e-39 166.4 230 46.5
Dinv18568 Davidia involucrata HOM05D005918 ORTHO05D008619 4.2e-35 152.5 242 38.4
RcHm_v2.0_Chr5g0039731 Rosa chinensis HOM05D005918 ORTHO05D008619 7.9e-34 148.3 242 41.7
Haze_13000 Corylus avellana HOM05D005918 ORTHO05D008619 1.4e-33 147.5 248 39.1
Lj8C119G10 Lonicera japonica HOM05D005918 ORTHO05D008619 1.4e-33 147.5 237 39.2
Prupe.3G224500 Prunus persica HOM05D005918 ORTHO05D008619 8.8e-33 144.8 247 41.7
FAN14G1293 Fragaria x ananassa HOM05D000337 ORTHO05D000297 4.8e-31 139.0 230 39.6
Duzib248G1541 Durio zibethinus HOM05D005918 ORTHO05D008619 6.3e-31 138.7 233 36.9
FvH4_6g45630 Fragaria vesca HOM05D005918 ORTHO05D008619 9.1e-30 134.8 230 38.7
FAN05G2793 Fragaria x ananassa HOM05D005918 ORTHO05D020733 2.9e-28 129.8 157 49.0
FAN09G1918 Fragaria x ananassa HOM05D005918 ORTHO05D020733 1.5e-27 127.5 221 39.8
Nn1g06897 Nelumbo nucifera HOM05D005918 ORTHO05D008619 1.9e-27 127.1 249 31.7
Atru.chr6.3104 Acer truncatum HOM05D005918 ORTHO05D008619 5.5e-27 125.6 231 33.8
Prupe.3G224300 Prunus persica HOM05D005918 ORTHO05D008619 5.5e-27 125.6 252 36.9
FAN23G1861 Fragaria x ananassa HOM05D005918 ORTHO05D020733 1.4e-25 120.9 134 50.7
TWI75G1325 Tripterygium wilfordii HOM05D005918 ORTHO05D008619 1.4e-25 120.9 234 36.8
Cfa014483 Carpinus fangiana HOM05D005918 ORTHO05D008619 4.4e-24 115.9 226 37.2
AT4G03220 Arabidopsis thaliana HOM05D005918 ORTHO05D008619 1.9e-19 100.5 174 35.6
AL6G49710 Arabidopsis lyrata HOM05D005918 ORTHO05D008619 8.0e-18 95.1 176 35.2
CSS0021142 Camellia sinensis var. sinensis HOM05D005918 ORTHO05D008619 1.8e-17 94.0 232 30.2
RcHm_v2.0_Chr4g0409631 Rosa chinensis HOM05D005918 ORTHO05D008619 4.0e-17 92.8 155 38.7
CANSAT64G2706 Cannabis sativa HOM05D005918 ORTHO05D008619 5.2e-17 92.4 221 32.1
Thhalv10029130m.g Eutrema salsugineum HOM05D005918 ORTHO05D008619 5.2e-17 92.4 178 32.6
MD09G1101500 Malus domestica HOM05D005918 ORTHO05D008619 5.2e-17 92.4 244 27.5
Carub.0006s3383 Capsella rubella HOM05D005918 ORTHO05D008619 6.8e-17 92.0 173 34.7
CARHR251670 Cardamine hirsuta HOM05D005918 ORTHO05D008619 6.8e-17 92.0 175 33.7
RcHm_v2.0_Chr3g0450391 Rosa chinensis HOM05D005918 ORTHO05D020733 8.8e-17 91.7 127 40.9
CsaV3_6G012610 Cucumis sativus L. HOM05D005918 ORTHO05D008619 1.5e-16 90.9 228 29.4
Potri.013G151200 Populus trichocarpa HOM05D005918 ORTHO05D008619 1.5e-16 90.9 233 30.5
Sabra13G0121500 Salix brachista HOM05D005918 ORTHO05D008619 2.0e-16 90.5 233 30.0
Medtr4g045900 Medicago truncatula HOM05D005918 ORTHO05D008619 4.4e-16 89.4 238 29.8
BcaB05g23693 Brassica carinata HOM05D005918 ORTHO05D008619 5.7e-16 89.0 174 32.2
TPR.G24493 Trifolium pratense HOM05D005918 ORTHO05D008619 5.7e-16 89.0 211 30.3
Thecc.02G165700 Theobroma cacao HOM05D005918 ORTHO05D008619 7.5e-16 88.6 235 30.2
A02p25150 Brassica napus HOM05D005918 ORTHO05D008619 9.8e-16 88.2 172 32.0
C02p39950 Brassica napus HOM05D005918 ORTHO05D008619 9.8e-16 88.2 172 32.0
Haze_13001 Corylus avellana HOM05D005918 ORTHO05D008619 1.3e-15 87.8 223 29.1
BraA02t07503Z Brassica rapa HOM05D005918 ORTHO05D008619 1.7e-15 87.4 172 32.0
Sed0020119 Sechium edule HOM05D005918 ORTHO05D008619 1.7e-15 87.4 218 27.5
Migut.M00375 Erythranthe guttata HOM05D005918 ORTHO05D008619 2.2e-15 87.0 231 29.4
Sp6g03260 Schrenkiella parvula HOM05D005918 ORTHO05D008619 2.8e-15 86.7 174 32.8
Duzib132G0072 Durio zibethinus HOM05D005918 ORTHO05D008619 3.7e-15 86.3 230 30.4
PGR042G3696 Punica granatum HOM05D005918 ORTHO05D008619 3.7e-15 86.3 189 31.7
Cfa014484 Carpinus fangiana HOM05D005918 ORTHO05D008619 6.3e-15 85.5 223 29.1
Duzib052G0766 Durio zibethinus HOM05D005918 ORTHO05D008619 1.1e-14 84.7 228 31.1
FAN02G3920 Fragaria x ananassa HOM05D005918 ORTHO05D008619 1.4e-14 84.3 247 26.7
FAN19G3139 Fragaria x ananassa HOM05D005918 ORTHO05D008619 1.4e-14 84.3 125 41.6
GSVIVG01000421001 Vitis vinifera HOM05D005918 ORTHO05D008619 1.8e-14 84.0 229 27.1
BcaC03g16217 Brassica carinata HOM05D005918 ORTHO05D008619 2.4e-14 83.6 172 30.8
BolC2t10022H Brassica oleracea HOM05D005918 ORTHO05D008619 2.4e-14 83.6 172 30.8
Cc05_g05630 Coffea canephora HOM05D005918 ORTHO05D008619 2.4e-14 83.6 241 26.6
FvH4_6g44010 Fragaria vesca HOM05D005918 ORTHO05D008619 3.1e-14 83.2 247 26.7
Eucgr.A01743 Eucalyptus grandis HOM05D005918 ORTHO05D008619 4.1e-14 82.8 175 32.6
FAN05G1098 Fragaria x ananassa HOM05D005918 ORTHO05D008619 5.4e-14 82.4 224 28.6
ClCG02G011180 Citrullus lanatus HOM05D005918 ORTHO05D008619 7.0e-14 82.0 243 26.7
HanXRQChr17g0543071 Helianthus annuus HOM05D005918 ORTHO05D008619 1.2e-13 81.3 183 32.8
Sc06g0006100 Simmondsia chinensis HOM05D005918 ORTHO05D008619 1.2e-13 81.3 233 27.0
Lj1C747T5 Lonicera japonica HOM05D005918 ORTHO05D008619 1.6e-13 80.9 233 25.3
Manes.13G075841 Manihot esculenta HOM05D005918 ORTHO05D008619 2.7e-13 80.1 252 27.4
RcHm_v2.0_Chr2g0160751 Rosa chinensis HOM05D005918 ORTHO05D008619 2.7e-13 80.1 224 28.1
QL08p034510 Quercus lobata HOM05D005918 ORTHO05D008619 5.9e-13 79.0 247 25.9
Cfa005421 Carpinus fangiana HOM05D002400 ORTHO05D002568 2.9e-12 76.6 248 29.8
VMungo1127G0943 Vigna mungo HOM05D005918 ORTHO05D008619 3.8e-12 76.3 254 27.2
FAN05G0756 Fragaria x ananassa HOM05D005918 ORTHO05D020733 5.0e-12 75.9 102 42.2
Actinidia27026 Actinidia chinensis HOM05D005918 ORTHO05D008619 2.5e-11 73.6 233 26.2
Cfa005420 Carpinus fangiana HOM05D002400 ORTHO05D002568 2.5e-11 73.6 247 30.0
FAN21G2775 Fragaria x ananassa HOM05D005918 ORTHO05D008619 3.2e-11 73.2 74 51.4
THA.LOC104826019 Tarenaya hassleriana HOM05D005918 ORTHO05D008619 4.2e-11 72.8 229 25.8
Phvul.011G108100 Phaseolus vulgaris HOM05D005918 ORTHO05D008619 9.5e-11 71.6 254 27.2
unitig_578.g16466 Utricularia gibba HOM05D005918 ORTHO05D008619 1.6e-10 70.9 170 35.3
PGSC0003DMG400026160 Solanum tuberosum HOM05D005918 ORTHO05D008619 2.1e-10 70.5 232 25.4
MD14G1025400 Malus domestica HOM05D002400 ORTHO05D002568 2.8e-10 70.1 189 29.1
Peaxi162Scf00007g01619 Petunia axillaris HOM05D005918 ORTHO05D008619 3.6e-10 69.7 232 25.9
CiPaw.03G165700 Carya illinoinensis HOM05D005918 ORTHO05D008619 4.7e-10 69.3 249 26.1
MD14G1025300 Malus domestica HOM05D002400 ORTHO05D002568 1.4e-09 67.8 188 27.7
Aa31LG5G2720 Aethionema arabicum HOM05D005918 ORTHO05D008619 2.3e-09 67.0 218 25.7
Cfa005419 Carpinus fangiana HOM05D002400 ORTHO05D002568 2.3e-09 67.0 234 28.6
Glyma.12G103400 Glycine max HOM05D005918 ORTHO05D008619 4.0e-09 66.2 254 26.0
Nn1g07075 Nelumbo nucifera HOM05D000051 ORTHO05D000015 4.0e-09 66.2 167 32.3
Solyc07g053040.3 Solanum lycopersicum HOM05D005918 ORTHO05D008619 4.0e-09 66.2 232 24.1
Lalb_Chr19g0135611 Lupinus albus HOM05D005918 ORTHO05D008619 8.8e-09 65.1 229 25.8
vmacro12117 Vaccinium macrocarpon HOM05D002400 ORTHO05D002568 8.8e-09 65.1 182 30.8
Haze_16779 Corylus avellana HOM05D002400 ORTHO05D002568 1.2e-08 64.7 152 27.6
Haze_04784 Corylus avellana HOM05D002400 ORTHO05D002568 1.5e-08 64.3 152 28.9
Haze_01604 Corylus avellana HOM05D002400 ORTHO05D002568 3.4e-08 63.2 232 25.4
FvH4_3g33042 Fragaria vesca HOM05D000312 ORTHO05D000221 3.4e-08 63.2 168 31.0
FAN11G1830 Fragaria x ananassa HOM05D000312 ORTHO05D000221 3.4e-08 63.2 168 31.0
Cfa017093 Carpinus fangiana HOM05D002400 ORTHO05D002568 4.4e-08 62.8 159 29.6
Prupe.3G224400 Prunus persica HOM05D005918 ORTHO05D008619 4.4e-08 62.8 93 40.9
FAN25G2193 Fragaria x ananassa HOM05D005918 ORTHO05D008619 7.5e-08 62.0 103 36.9
Haze_21106 Corylus avellana HOM05D002400 ORTHO05D002568 9.8e-08 61.6 159 28.9
FAN14G4031 Fragaria x ananassa HOM05D002400 ORTHO05D002568 1.3e-07 61.2 175 29.1
SGA_v2.0_scaffold147G36349 Striga asiatica HOM05D005918 ORTHO05D008619 1.3e-07 61.2 220 25.5
FAN04G1392 Fragaria x ananassa HOM05D002400 ORTHO05D002568 1.7e-07 60.8 185 30.8
Haze_21068 Corylus avellana HOM05D002400 ORTHO05D002568 2.2e-07 60.5 168 29.2
RcHm_v2.0_Chr2g0086171 Rosa chinensis HOM05D005918 ORTHO05D008619 2.2e-07 60.5 121 36.4
CSS0018246 Camellia sinensis var. sinensis HOM05D000051 ORTHO05D000015 3.7e-07 59.7 234 28.2
CiPaw.12G069200 Carya illinoinensis HOM05D002400 ORTHO05D002568 3.7e-07 59.7 180 29.4
PSO198G0156 Papaver somniferum HOM05D000051 ORTHO05D000015 3.7e-07 59.7 219 25.6
CSS0010373 Camellia sinensis var. sinensis HOM05D000051 ORTHO05D000015 4.9e-07 59.3 235 28.1
Cfa012832 Carpinus fangiana HOM05D002400 ORTHO05D002568 4.9e-07 59.3 195 27.7
DCAR_012967 Daucus carota HOM05D005918 ORTHO05D008619 4.9e-07 59.3 205 26.3
Prupe.7G108700 Prunus persica HOM05D002400 ORTHO05D002568 4.9e-07 59.3 164 28.0
RcHm_v2.0_Chr3g0474111 Rosa chinensis HOM05D002400 ORTHO05D002568 4.9e-07 59.3 144 29.2
Cfa000125 Carpinus fangiana HOM05D002400 ORTHO05D002568 6.3e-07 58.9 168 28.0
Medtr1g011400 Medicago truncatula HOM05D000312 ORTHO05D000221 6.3e-07 58.9 128 32.0
Medtr1g013580 Medicago truncatula HOM05D000312 ORTHO05D000221 8.3e-07 58.5 131 29.8
QL02p059625 Quercus lobata HOM05D002400 ORTHO05D002568 8.3e-07 58.5 156 28.8
arahy.Tifrunner.gnm1.ann1.S3SMBV Arachis hypogaea HOM05D000312 ORTHO05D000221 1.1e-06 58.2 111 34.2
arahy.Tifrunner.gnm1.ann1.X6923X Arachis hypogaea HOM05D000312 ORTHO05D000221 1.1e-06 58.2 111 34.2
Medtr4g057725 Medicago truncatula HOM05D000312 ORTHO05D000221 1.1e-06 58.2 119 31.9
Haze_06898 Corylus avellana HOM05D002400 ORTHO05D002568 1.4e-06 57.8 168 29.2
FAN15G3436 Fragaria x ananassa HOM05D000312 ORTHO05D000221 1.4e-06 57.8 112 33.9
PSO339G1079 Papaver somniferum HOM05D000051 ORTHO05D000015 1.4e-06 57.8 213 25.8
RcHm_v2.0_Chr2g0086271 Rosa chinensis HOM05D005918 ORTHO05D341835 1.4e-06 57.8 94 42.6
RcHm_v2.0_Chr6g0248851 Rosa chinensis HOM05D000312 ORTHO05D000221 1.4e-06 57.8 109 32.1
vmacro05682 Vaccinium macrocarpon HOM05D002400 ORTHO05D002568 1.4e-06 57.8 180 27.2
Ca_13329_v3 Cicer arietinum L. HOM05D000312 ORTHO05D000221 1.8e-06 57.4 167 30.5
RcHm_v2.0_Chr3g0474091 Rosa chinensis HOM05D002400 ORTHO05D002568 1.8e-06 57.4 185 28.6
CSS0034448 Camellia sinensis var. sinensis HOM05D000051 ORTHO05D000015 2.4e-06 57.0 235 28.1
Phvul.001G017300 Phaseolus vulgaris HOM05D000312 ORTHO05D000221 2.4e-06 57.0 159 30.8
COL.COLO4_13044 Corchorus olitorius HOM05D005918 ORTHO05D008619 3.1e-06 56.6 115 33.9
Medtr1g021825 Medicago truncatula HOM05D000312 ORTHO05D000221 3.1e-06 56.6 111 33.3
Psat6g024480 Pisum sativum HOM05D000312 ORTHO05D000221 3.1e-06 56.6 143 27.3
Cfa005425 Carpinus fangiana HOM05D002400 ORTHO05D002568 4.1e-06 56.2 232 27.2
FvH4_6g19040 Fragaria vesca HOM05D002400 ORTHO05D002568 4.1e-06 56.2 221 23.1
Lj5g0020125 Lotus japonicus HOM05D000312 ORTHO05D000221 4.1e-06 56.2 118 35.6
RcHm_v2.0_Chr3g0473911 Rosa chinensis HOM05D002400 ORTHO05D002568 5.4e-06 55.8 184 29.3
Aqoxy7G01130 Aquilegia oxysepala HOM05D001396 ORTHO05D000493 7.0e-06 55.5 140 30.7
TWI36G0935 Tripterygium wilfordii HOM05D000312 ORTHO05D000221 7.0e-06 55.5 121 31.4
RcHm_v2.0_Chr6g0248681 Rosa chinensis HOM05D000312 ORTHO05D000221 9.2e-06 55.1 115 31.3
TWI60G1609 Tripterygium wilfordii HOM05D002400 ORTHO05D002568 9.2e-06 55.1 245 26.1
TAR629G1159 Trochodendron aralioides HOM05D008030 ORTHO05D003385 9.2e-06 55.1 175 30.3


User provided reference genes

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