Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0350231 Rosa chinensis HOM05D001769 ORTHO05D001695 2.2e-39 165.2 86 100.0
RcHm_v2.0_Chr6g0290381 Rosa chinensis HOM05D001769 ORTHO05D001695 1.0e-12 76.6 43 88.4
FvH4_2g23130 Fragaria vesca HOM05D001769 ORTHO05D001695 2.8e-10 68.6 37 86.5
FAN15G0114 Fragaria x ananassa HOM05D001769 ORTHO05D001695 2.8e-10 68.6 37 86.5
FAN24G0229 Fragaria x ananassa HOM05D001769 ORTHO05D001695 2.8e-10 68.6 37 86.5
MD03G1260400 Malus domestica HOM05D001769 ORTHO05D001695 1.8e-09 65.9 39 79.5
MD11G1280700 Malus domestica HOM05D001769 ORTHO05D001695 1.8e-09 65.9 43 72.1
Prupe.8G236600 Prunus persica HOM05D001769 ORTHO05D001695 1.8e-09 65.9 43 79.1
Duzib211G0436 Durio zibethinus HOM05D001769 ORTHO05D001695 3.0e-09 65.1 36 80.6
Potri.002G049800 Populus trichocarpa HOM05D001769 ORTHO05D001695 3.0e-09 65.1 39 74.4
Potri.005G213100 Populus trichocarpa HOM05D001769 ORTHO05D001695 3.0e-09 65.1 39 74.4
Atru.chr5.1491 Acer truncatum HOM05D001769 ORTHO05D001695 4.0e-09 64.7 45 73.3
Sabra02G0040700 Salix brachista HOM05D001769 ORTHO05D001695 4.0e-09 64.7 39 74.4
Thecc.01G273600 Theobroma cacao HOM05D001769 ORTHO05D001695 5.2e-09 64.3 36 80.6
BcaC07g40804 Brassica carinata HOM05D001769 ORTHO05D001695 6.8e-09 63.9 45 62.2
C08p37950 Brassica napus HOM05D001769 ORTHO05D001695 6.8e-09 63.9 45 62.2
BolC8t51372H Brassica oleracea HOM05D001769 ORTHO05D001695 6.8e-09 63.9 45 62.2
COL.COLO4_09057 Corchorus olitorius HOM05D001769 ORTHO05D001695 6.8e-09 63.9 36 80.6
A09p55050 Brassica napus HOM05D001769 ORTHO05D001695 8.9e-09 63.5 43 62.8
Ciclev10020605m.g Citrus clementina HOM05D001769 ORTHO05D001695 1.2e-08 63.2 42 66.7
DCAR_002712 Daucus carota HOM05D001769 ORTHO05D001695 1.2e-08 63.2 40 70.0
Gohir.D08G073600 Gossypium hirsutum HOM05D001769 ORTHO05D001695 1.5e-08 62.8 36 77.8
CARHR291700 Cardamine hirsuta HOM05D001769 ORTHO05D001695 2.0e-08 62.4 36 75.0
Haze_04669 Corylus avellana HOM05D001769 ORTHO05D001695 2.0e-08 62.4 43 72.1
Dinv32899 Davidia involucrata HOM05D001769 ORTHO05D001695 2.0e-08 62.4 45 68.9
Gohir.A08G065100 Gossypium hirsutum HOM05D001769 ORTHO05D001695 2.0e-08 62.4 34 79.4
SGA_v2.0_scaffold191G40482 Striga asiatica HOM05D001769 ORTHO05D001695 2.0e-08 62.4 42 69.0
TAR633G0813 Trochodendron aralioides HOM05D001769 ORTHO05D001695 2.0e-08 62.4 45 68.9
vmacro15361 Vaccinium macrocarpon HOM05D001769 ORTHO05D001695 2.0e-08 62.4 37 75.7
Sed0027428 Sechium edule HOM05D001769 ORTHO05D001695 2.6e-08 62.0 45 68.9
TWI75G1394 Tripterygium wilfordii HOM05D001769 ORTHO05D001695 2.6e-08 62.0 34 79.4
BcaC05g28026 Brassica carinata HOM05D001769 ORTHO05D001695 3.4e-08 61.6 37 75.7
C05p40390 Brassica napus HOM05D001769 ORTHO05D001695 3.4e-08 61.6 37 75.7
BolC5t32780H Brassica oleracea HOM05D001769 ORTHO05D001695 3.4e-08 61.6 37 75.7
Cfa006178 Carpinus fangiana HOM05D001769 ORTHO05D001695 3.4e-08 61.6 43 69.8
SGA_v2.0_scaffold1G00515 Striga asiatica HOM05D001769 ORTHO05D001695 3.4e-08 61.6 36 75.0
MSTRG.21544 Avicennia marina HOM05D001769 ORTHO05D001695 4.4e-08 61.2 49 61.2
Cpa.g.sc34.94 Carica papaya HOM05D001769 ORTHO05D001695 4.4e-08 61.2 34 76.5
Thhalv10006074m.g Eutrema salsugineum HOM05D001769 ORTHO05D001695 4.4e-08 61.2 35 74.3
Potri.010G083600 Populus trichocarpa HOM05D001769 ORTHO05D001695 4.4e-08 61.2 43 65.1
SalBow4G0978 Salvia bowleyana HOM05D001769 ORTHO05D001695 4.4e-08 61.2 37 73.0
Hund09519 Selenicereus undatus HOM05D001769 ORTHO05D001695 4.4e-08 61.2 37 78.4
TAR362G0185 Trochodendron aralioides HOM05D001769 ORTHO05D001695 4.4e-08 61.2 39 71.8
Aqoxy2G03438 Aquilegia oxysepala HOM05D001769 ORTHO05D001695 5.7e-08 60.8 37 73.0
MSTRG.9965 Avicennia marina HOM05D001769 ORTHO05D001695 5.7e-08 60.8 37 75.7
BraA09t40913Z Brassica rapa HOM05D001769 ORTHO05D001695 5.7e-08 60.8 43 60.5
CANSAT25G1683 Cannabis sativa HOM05D001769 ORTHO05D001695 5.7e-08 60.8 37 73.0
ECA247G3416 Erigeron canadensis HOM05D001769 ORTHO05D001695 5.7e-08 60.8 38 68.4
Manes.01G205100 Manihot esculenta HOM05D001769 ORTHO05D001695 5.7e-08 60.8 39 66.7
TAR365G0541 Trochodendron aralioides HOM05D001769 ORTHO05D001695 5.7e-08 60.8 39 71.8
GSVIVG01001192001 Vitis vinifera HOM05D001769 ORTHO05D001695 5.7e-08 60.8 42 66.7
Actinidia08478 Actinidia chinensis HOM05D001769 ORTHO05D001695 7.5e-08 60.5 36 77.8
CAN.G1402.5 Capsicum annuum HOM05D001769 ORTHO05D001695 7.5e-08 60.5 38 73.7
CsaV3_7G027790 Cucumis sativus L. HOM05D001769 ORTHO05D001695 7.5e-08 60.5 37 73.0
Lj1C49G14 Lonicera japonica HOM05D001769 ORTHO05D001695 7.5e-08 60.5 38 71.1
Rhsim02G0027800 Rhododendron simsii HOM05D001769 ORTHO05D001695 7.5e-08 60.5 37 73.0
THA.LOC104808566 Tarenaya hassleriana HOM05D001769 ORTHO05D001695 7.5e-08 60.5 45 64.4
Aa31LG10G17100 Aethionema arabicum HOM05D001769 ORTHO05D001695 9.8e-08 60.1 36 72.2
DCAR_030677 Daucus carota HOM05D001769 ORTHO05D000003 9.8e-08 60.1 34 76.5
Gorai.004G078000 Gossypium raimondii HOM05D001769 ORTHO05D001695 9.8e-08 60.1 36 75.0
Lsat_1_v5_gn_9_6080 Lactuca sativa HOM05D001769 ORTHO05D001695 9.8e-08 60.1 34 76.5
Peaxi162Scf00092g00025 Petunia axillaris HOM05D001769 ORTHO05D001695 9.8e-08 60.1 39 69.2
Psat3g062800 Pisum sativum HOM05D001769 ORTHO05D001695 9.8e-08 60.1 37 73.0
Actinidia24916 Actinidia chinensis HOM05D001769 ORTHO05D001695 1.3e-07 59.7 45 66.7
AT3G63250 Arabidopsis thaliana HOM05D001769 ORTHO05D001695 1.3e-07 59.7 36 69.4
CSS0004386 Camellia sinensis var. sinensis HOM05D001769 ORTHO05D001695 1.3e-07 59.7 59 54.2
CSS0045268 Camellia sinensis var. sinensis HOM05D001769 ORTHO05D001695 1.3e-07 59.7 59 54.2
Ca_08618_v3 Cicer arietinum L. HOM05D001769 ORTHO05D001695 1.3e-07 59.7 34 73.5
Ca_08626_v3 Cicer arietinum L. HOM05D001769 ORTHO05D001695 1.3e-07 59.7 34 73.5
Lj1g0000088 Lotus japonicus HOM05D001769 ORTHO05D001695 1.3e-07 59.7 37 70.3
Manes.05G078500 Manihot esculenta HOM05D001769 ORTHO05D001695 1.3e-07 59.7 39 66.7
PGR119G2068 Punica granatum HOM05D001769 ORTHO05D001695 1.3e-07 59.7 36 75.0
unitig_22.g5268 Utricularia gibba HOM05D001769 ORTHO05D001695 1.3e-07 59.7 34 76.5
BcaB06g26382 Brassica carinata HOM05D001769 ORTHO05D001695 1.7e-07 59.3 37 73.0
BraA05t21485Z Brassica rapa HOM05D001769 ORTHO05D001695 1.7e-07 59.3 37 73.0
Carub.0005s2993 Capsella rubella HOM05D001769 ORTHO05D001695 1.7e-07 59.3 35 71.4
Lalb_Chr25g0290191 Lupinus albus HOM05D001769 ORTHO05D001695 1.7e-07 59.3 36 75.0
PSO210G4364 Papaver somniferum HOM05D001769 ORTHO05D001695 1.7e-07 59.3 39 66.7
PSO210G7192 Papaver somniferum HOM05D001769 ORTHO05D001695 1.7e-07 59.3 39 66.7
Phvul.001G153900 Phaseolus vulgaris HOM05D001769 ORTHO05D001695 1.7e-07 59.3 38 68.4
TWI12G1235 Tripterygium wilfordii HOM05D001769 ORTHO05D001695 1.7e-07 59.3 41 65.9
GSVIVG01018019001 Vitis vinifera HOM05D001769 ORTHO05D001695 1.7e-07 59.3 34 73.5
Cfa008461 Carpinus fangiana HOM05D001769 ORTHO05D001695 2.2e-07 58.9 39 66.7
Cc03_g04100 Coffea canephora HOM05D001769 ORTHO05D001695 2.2e-07 58.9 39 66.7
Migut.D00332 Erythranthe guttata HOM05D001769 ORTHO05D001695 2.2e-07 58.9 39 64.1
FvH4_4g00800 Fragaria vesca HOM05D001769 ORTHO05D001695 2.2e-07 58.9 42 64.3
FAN12G1465 Fragaria x ananassa HOM05D001769 ORTHO05D001695 2.2e-07 58.9 42 64.3
Glyma.19G158800 Glycine max HOM05D001769 ORTHO05D001695 2.2e-07 58.9 38 68.4
Solyc09g065520.4 Solanum lycopersicum HOM05D001769 ORTHO05D001695 2.2e-07 58.9 52 50.0
Sopen09g027280 Solanum pennellii HOM05D001769 ORTHO05D001695 2.2e-07 58.9 44 56.8
Sopen09g031320 Solanum pennellii HOM05D001769 ORTHO05D001695 2.2e-07 58.9 37 70.3
VMungo1383G2322 Vigna mungo HOM05D001769 ORTHO05D001695 2.2e-07 58.9 38 68.4
Actinidia21135 Actinidia chinensis HOM05D001769 ORTHO05D001695 2.8e-07 58.5 36 72.2
BcaB02g08074 Brassica carinata HOM05D001769 ORTHO05D001695 2.8e-07 58.5 43 58.1
A04p00140 Brassica napus HOM05D001769 ORTHO05D001695 2.8e-07 58.5 43 58.1
C04p29960 Brassica napus HOM05D001769 ORTHO05D001695 2.8e-07 58.5 43 58.1
BolC4t24529H Brassica oleracea HOM05D001769 ORTHO05D001695 2.8e-07 58.5 43 58.1
Hma1.2p1_1572F.1_g291510 Hydrangea macrophylla HOM05D001769 ORTHO05D001695 2.8e-07 58.5 39 66.7
Nitab4.5_0000085g0320 Nicotiana tabacum HOM05D001769 ORTHO05D001695 2.8e-07 58.5 34 73.5
Sabra05G0162800 Salix brachista HOM05D001769 ORTHO05D001695 2.8e-07 58.5 39 66.7
SalBow2G2364 Salvia bowleyana HOM05D001769 ORTHO05D001695 2.8e-07 58.5 37 73.0
Aa31LG8G9230 Aethionema arabicum HOM05D001769 ORTHO05D001695 3.7e-07 58.2 41 65.9
AL5G46100 Arabidopsis lyrata HOM05D001769 ORTHO05D001695 3.7e-07 58.2 35 68.6
AT3G22740 Arabidopsis thaliana HOM05D001769 ORTHO05D001695 3.7e-07 58.2 42 61.9
HanXRQChr10g0282261 Helianthus annuus HOM05D001769 ORTHO05D001695 3.7e-07 58.2 34 70.6
Medtr7g095280 Medicago truncatula HOM05D001769 ORTHO05D001695 3.7e-07 58.2 37 67.6
Nn1g02391 Nelumbo nucifera HOM05D001769 ORTHO05D001695 3.7e-07 58.2 39 66.7
Nn1g02397 Nelumbo nucifera HOM05D001769 ORTHO05D001695 3.7e-07 58.2 39 66.7
Nitab4.5_0000252g0130 Nicotiana tabacum HOM05D001769 ORTHO05D001695 3.7e-07 58.2 37 67.6
Peaxi162Scf00230g01011 Petunia axillaris HOM05D001769 ORTHO05D001695 3.7e-07 58.2 44 56.8
PGSC0003DMG400019316 Solanum tuberosum HOM05D001769 ORTHO05D001695 3.7e-07 58.2 37 67.6
TPR.G24319 Trifolium pratense HOM05D001769 ORTHO05D001695 3.7e-07 58.2 37 67.6
AL3G37050 Arabidopsis lyrata HOM05D001769 ORTHO05D001695 4.9e-07 57.8 42 61.9
Carub.0003s2287 Capsella rubella HOM05D001769 ORTHO05D001695 4.9e-07 57.8 44 61.4
FAN22G1911 Fragaria x ananassa HOM05D001769 ORTHO05D001695 4.9e-07 57.8 41 63.4
Lsat_1_v5_gn_5_186100 Lactuca sativa HOM05D001769 ORTHO05D001695 4.9e-07 57.8 41 61.0
Rhsim01G0272800 Rhododendron simsii HOM05D001769 ORTHO05D001695 4.9e-07 57.8 37 70.3
PGSC0003DMG400032243 Solanum tuberosum HOM05D001769 ORTHO05D001695 4.9e-07 57.8 37 67.6
SGA_v2.0_scaffold138G35315 Striga asiatica HOM05D001769 ORTHO05D001695 4.9e-07 57.8 39 69.2
vmacro14905 Vaccinium macrocarpon HOM05D001769 ORTHO05D001695 4.9e-07 57.8 45 64.4
ATR0665G350 Amborella trichopoda HOM05D001769 ORTHO05D001695 6.3e-07 57.4 38 65.8
arahy.Tifrunner.gnm1.ann1.0W74TV Arachis hypogaea HOM05D001769 ORTHO05D001695 6.3e-07 57.4 37 70.3
arahy.Tifrunner.gnm1.ann1.2XQ2YI Arachis hypogaea HOM05D001769 ORTHO05D001695 6.3e-07 57.4 37 70.3
arahy.Tifrunner.gnm1.ann1.8L0DUY Arachis hypogaea HOM05D001769 ORTHO05D001695 6.3e-07 57.4 37 70.3
Cc01_g19150 Coffea canephora HOM05D001769 ORTHO05D001695 6.3e-07 57.4 54 55.6
Lj3C730T4 Lonicera japonica HOM05D001769 ORTHO05D001695 6.3e-07 57.4 39 66.7
Nitab4.5_0009452g0020 Nicotiana tabacum HOM05D001769 ORTHO05D001695 6.3e-07 57.4 37 64.9
PSO170G6123 Papaver somniferum HOM05D001769 ORTHO05D001695 6.3e-07 57.4 37 70.3
PSO210G3555 Papaver somniferum HOM05D001769 ORTHO05D001695 6.3e-07 57.4 37 67.6
BraA04t15736Z Brassica rapa HOM05D001769 ORTHO05D001695 8.3e-07 57.0 34 67.6
CANSAT78G0673 Cannabis sativa HOM05D001769 ORTHO05D001695 8.3e-07 57.0 39 66.7
CARHR098590 Cardamine hirsuta HOM05D001769 ORTHO05D001695 8.3e-07 57.0 43 65.1
MELO3C015794.2 Cucumis melo HOM05D001769 ORTHO05D001695 8.3e-07 57.0 37 70.3
ECA248G1983 Erigeron canadensis HOM05D001769 ORTHO05D001695 8.3e-07 57.0 34 70.6
HanXRQChr08g0213361 Helianthus annuus HOM05D001769 ORTHO05D001695 8.3e-07 57.0 39 61.5
Nn6g34130 Nelumbo nucifera HOM05D001769 ORTHO05D001695 8.3e-07 57.0 39 64.1
Oeu023619.1 Olea europaea HOM05D001769 ORTHO05D001695 8.3e-07 57.0 34 73.5
PGR004G1463 Punica granatum HOM05D001769 ORTHO05D001695 8.3e-07 57.0 43 58.1
PGR075G0001 Punica granatum HOM05D001769 ORTHO05D001695 8.3e-07 57.0 43 58.1
QL12p020734 Quercus lobata HOM05D001769 ORTHO05D001695 8.3e-07 57.0 52 59.6
Sabra10G0059400 Salix brachista HOM05D001769 ORTHO05D001695 8.3e-07 57.0 41 61.0
Atru.chr4.2389 Acer truncatum HOM05D001769 ORTHO05D001695 1.1e-06 56.6 44 59.1
Atru.chr4.2412 Acer truncatum HOM05D001769 ORTHO05D001695 1.1e-06 56.6 44 59.1
A05p26000 Brassica napus HOM05D001769 ORTHO05D001695 1.1e-06 56.6 37 70.3
MBI11_g33000_MAGBIO Magnolia biondii HOM05D001769 ORTHO05D001695 1.1e-06 56.6 35 68.6
Oeu053314.1 Olea europaea HOM05D001769 ORTHO05D001695 1.1e-06 56.6 34 73.5
Os01g0772900 Oryza sativa ssp. japonica HOM05D001769 ORTHO05D001695 1.1e-06 56.6 37 67.6
Sabra08G0118700 Salix brachista HOM05D001769 ORTHO05D001695 1.1e-06 56.6 42 66.7
Sp3g20460 Schrenkiella parvula HOM05D001769 ORTHO05D001695 1.1e-06 56.6 37 70.3
Sp5g00280 Schrenkiella parvula HOM05D001769 ORTHO05D001695 1.1e-06 56.6 44 54.5
BcaC07g42698 Brassica carinata HOM05D001769 ORTHO05D001695 1.4e-06 56.2 38 60.5
Cpa.g.sc58.63 Carica papaya HOM05D001769 ORTHO05D001695 1.4e-06 56.2 39 64.1
CiPaw.02G122600 Carya illinoinensis HOM05D001769 ORTHO05D001695 1.4e-06 56.2 39 64.1
AUR62032310 Chenopodium quinoa HOM05D001769 ORTHO05D001695 1.4e-06 56.2 38 65.8
Migut.G00367 Erythranthe guttata HOM05D001769 ORTHO05D001695 1.4e-06 56.2 37 67.6
Thhalv10021051m.g Eutrema salsugineum HOM05D001769 ORTHO05D001695 1.4e-06 56.2 43 65.1
MD00G1181400 Malus domestica HOM05D001769 ORTHO05D001695 1.4e-06 56.2 39 64.1
PSO210G6804 Papaver somniferum HOM05D001769 ORTHO05D001695 1.4e-06 56.2 37 67.6
HPP92_020353 Vanilla planifolia HOM05D001769 ORTHO05D001695 1.4e-06 56.2 34 73.5
AUR62011991 Chenopodium quinoa HOM05D001769 ORTHO05D001695 1.8e-06 55.8 38 65.8
Gohir.D02G040200 Gossypium hirsutum HOM05D001769 ORTHO05D001695 1.8e-06 55.8 39 69.2
Gorai.005G044600 Gossypium raimondii HOM05D001769 ORTHO05D001695 1.8e-06 55.8 39 69.2
Lj5g0013491 Lotus japonicus HOM05D001769 ORTHO05D001695 1.8e-06 55.8 39 64.1
Psat0s5069g0040 Pisum sativum HOM05D001769 ORTHO05D001695 1.8e-06 55.8 34 67.6
Potri.008G155900 Populus trichocarpa HOM05D001769 ORTHO05D001695 1.8e-06 55.8 42 66.7
Prupe.1G018900 Prunus persica HOM05D001769 ORTHO05D001695 1.8e-06 55.8 39 64.1
RcHm_v2.0_Chr4g0387351 Rosa chinensis HOM05D001769 ORTHO05D001695 1.8e-06 55.8 37 67.6
Solyc09g082460.3 Solanum lycopersicum HOM05D001769 ORTHO05D001695 1.8e-06 55.8 37 67.6
TPR.G26124 Trifolium pratense HOM05D001769 ORTHO05D001695 1.8e-06 55.8 39 64.1
Pp3c8_6230 Physcomitrium patens HOM05D001769 ORTHO05D001695 2.4e-06 55.5 41 58.5
Sed0018164 Sechium edule HOM05D001769 ORTHO05D001695 2.4e-06 55.5 38 63.2
SEGI_31062 Sequoiadendron giganteum HOM05D001769 ORTHO05D001695 2.4e-06 55.5 34 64.7
ClCG09G007300 Citrullus lanatus HOM05D001769 ORTHO05D001695 3.1e-06 55.1 37 64.9
Ciclev10005328m.g Citrus clementina HOM05D001769 ORTHO05D001695 3.1e-06 55.1 44 56.8
Os10g0422200 Oryza sativa ssp. japonica HOM05D001769 ORTHO05D001695 3.1e-06 55.1 34 73.5
Glyma.03G156500 Glycine max HOM05D001769 ORTHO05D001695 4.1e-06 54.7 38 63.2
Glyma.20G148900 Glycine max HOM05D001769 ORTHO05D001695 4.1e-06 54.7 39 64.1
THA.LOC104823038 Tarenaya hassleriana HOM05D001769 ORTHO05D001695 4.1e-06 54.7 59 50.8
unitig_899.g14871 Utricularia gibba HOM05D001769 ORTHO05D001695 4.1e-06 54.7 50 54.0
VMungo0720G1536 Vigna mungo HOM05D001769 ORTHO05D001695 4.1e-06 54.7 39 64.1
Zm00001eb151780 Zea mays HOM05D001769 ORTHO05D001695 4.1e-06 54.7 39 61.5
CSS0050363 Camellia sinensis var. sinensis HOM05D001769 ORTHO05D001695 5.4e-06 54.3 34 67.6
Eucgr.H03427 Eucalyptus grandis HOM05D001769 ORTHO05D001695 5.4e-06 54.3 36 63.9
Ca_10863_v3 Cicer arietinum L. HOM05D001769 ORTHO05D001695 9.2e-06 53.5 34 64.7
Pp3c23_9570 Physcomitrium patens HOM05D001769 ORTHO05D001695 9.2e-06 53.5 41 56.1


User provided reference genes

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