Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0350071 Rosa chinensis HOM05D007221 ORTHO05D009204 3.5e-52 208.0 104 100.0
FAN20G2979 Fragaria x ananassa HOM05D007221 ORTHO05D009204 6.5e-30 134.0 79 84.8
FAN27G1052 Fragaria x ananassa HOM05D007221 ORTHO05D009204 6.5e-30 134.0 79 84.8
RcHm_v2.0_Chr6g0301081 Rosa chinensis HOM05D007221 ORTHO05D009204 1.4e-29 132.9 94 74.5
FvH4_2g39780 Fragaria vesca HOM05D007221 ORTHO05D009204 1.9e-29 132.5 94 73.4
MD08G1031600 Malus domestica HOM05D007221 ORTHO05D009204 2.1e-28 129.0 97 68.0
MD15G1027300 Malus domestica HOM05D007221 ORTHO05D009204 4.6e-28 127.9 97 68.0
Prupe.1G379100 Prunus persica HOM05D007221 ORTHO05D009204 1.1e-26 123.2 97 67.0
FAN15G0707 Fragaria x ananassa HOM05D007221 ORTHO05D009204 3.3e-26 121.7 68 88.2
CANSAT25G0501 Cannabis sativa HOM05D007221 ORTHO05D009204 2.6e-23 112.1 97 58.8
GSVIVG01009712001 Vitis vinifera HOM05D007221 ORTHO05D009204 5.8e-23 110.9 107 57.0
Eucgr.F01893 Eucalyptus grandis HOM05D007221 ORTHO05D009204 1.0e-22 110.2 73 71.2
Psat5g017120 Pisum sativum HOM05D007221 ORTHO05D009204 1.7e-22 109.4 97 58.8
Ciclev10002305m.g Citrus clementina HOM05D007221 ORTHO05D009204 3.8e-22 108.2 73 68.5
TPR.G12470 Trifolium pratense HOM05D007221 ORTHO05D009204 6.5e-22 107.5 98 56.1
Ca_15515_v3 Cicer arietinum L. HOM05D007221 ORTHO05D009204 1.1e-21 106.7 97 57.7
Manes.05G159500 Manihot esculenta HOM05D007221 ORTHO05D009204 1.1e-21 106.7 74 71.6
Thecc.08G027100 Theobroma cacao HOM05D007221 ORTHO05D009204 1.1e-21 106.7 104 52.9
Medtr3g111850 Medicago truncatula HOM05D007221 ORTHO05D009204 1.9e-21 105.9 97 56.7
ClCG08G015050 Citrullus lanatus HOM05D007221 ORTHO05D009204 3.2e-21 105.1 95 55.8
Haze_17964 Corylus avellana HOM05D007221 ORTHO05D009204 3.2e-21 105.1 69 73.9
Aqoxy6G01112 Aquilegia oxysepala HOM05D007221 ORTHO05D009204 4.2e-21 104.8 97 55.7
COL.COLO4_26312 Corchorus olitorius HOM05D007221 ORTHO05D009204 4.2e-21 104.8 106 54.7
MELO3C010945.2 Cucumis melo HOM05D007221 ORTHO05D009204 4.2e-21 104.8 95 54.7
Gorai.002G127900 Gossypium raimondii HOM05D007221 ORTHO05D009204 4.2e-21 104.8 107 53.3
PGR031G1076 Punica granatum HOM05D007221 ORTHO05D009204 4.2e-21 104.8 73 68.5
Gohir.A01G115700 Gossypium hirsutum HOM05D007221 ORTHO05D009204 5.5e-21 104.4 107 53.3
QL02p008631 Quercus lobata HOM05D007221 ORTHO05D009204 5.5e-21 104.4 108 52.8
Gohir.D01G104000 Gossypium hirsutum HOM05D007221 ORTHO05D009204 7.2e-21 104.0 70 68.6
Actinidia38006 Actinidia chinensis HOM05D007221 ORTHO05D009204 9.3e-21 103.6 97 56.7
CiPaw.15G078400 Carya illinoinensis HOM05D007221 ORTHO05D009204 9.3e-21 103.6 108 53.7
Lj1g0002842 Lotus japonicus HOM05D007221 ORTHO05D009204 1.6e-20 102.8 98 55.1
TAR625G0916 Trochodendron aralioides HOM05D007221 ORTHO05D009204 1.6e-20 102.8 97 53.6
Oeu063754.1 Olea europaea HOM05D007221 ORTHO05D009204 2.1e-20 102.4 97 55.7
Sabra14G0145300 Salix brachista HOM05D007221 ORTHO05D009204 2.1e-20 102.4 97 55.7
CsaV3_2G028730 Cucumis sativus L. HOM05D007221 ORTHO05D009204 2.7e-20 102.1 95 52.6
Glyma.04G031900 Glycine max HOM05D007221 ORTHO05D009204 2.7e-20 102.1 71 64.8
SGA_v2.0_scaffold111G31495 Striga asiatica HOM05D007221 ORTHO05D009204 3.5e-20 101.7 95 55.8
Atru.chr13.477 Acer truncatum HOM05D007221 ORTHO05D009204 4.6e-20 101.3 73 64.4
Hma1.2p1_0203F.1_g086350 Hydrangea macrophylla HOM05D007221 ORTHO05D009204 4.6e-20 101.3 97 54.6
Sc02g0006170 Simmondsia chinensis HOM05D007221 ORTHO05D009204 4.6e-20 101.3 96 56.2
Potri.014G196800 Populus trichocarpa HOM05D007221 ORTHO05D009204 6.1e-20 100.9 69 69.6
Dinv36085 Davidia involucrata HOM05D007221 ORTHO05D009204 7.9e-20 100.5 97 53.6
Lalb_Chr11g0062321 Lupinus albus HOM05D007221 ORTHO05D009204 7.9e-20 100.5 97 54.6
CSS0008817 Camellia sinensis var. sinensis HOM05D007221 ORTHO05D009204 1.3e-19 99.8 97 52.6
Peaxi162Scf00417g01337 Petunia axillaris HOM05D007221 ORTHO05D009204 1.3e-19 99.8 73 67.1
VMungo1309G3139 Vigna mungo HOM05D007221 ORTHO05D009204 1.3e-19 99.8 108 50.0
Cc10_g02840 Coffea canephora HOM05D007221 ORTHO05D009204 2.3e-19 99.0 97 56.7
Glyma.06G032000 Glycine max HOM05D007221 ORTHO05D009204 2.3e-19 99.0 71 63.4
Nitab4.5_0006280g0040 Nicotiana tabacum HOM05D007221 ORTHO05D009204 3.0e-19 98.6 73 67.1
Nitab4.5_0010510g0010 Nicotiana tabacum HOM05D007221 ORTHO05D009204 3.0e-19 98.6 73 67.1
Sp2g07400 Schrenkiella parvula HOM05D007221 ORTHO05D009204 3.0e-19 98.6 73 65.8
Sed0005529 Sechium edule HOM05D007221 ORTHO05D009204 3.0e-19 98.6 95 53.7
CARHR181710 Cardamine hirsuta HOM05D007221 ORTHO05D009204 3.9e-19 98.2 71 63.4
Thhalv10003376m.g Eutrema salsugineum HOM05D007221 ORTHO05D009204 3.9e-19 98.2 97 53.6
Phvul.009G057900 Phaseolus vulgaris HOM05D007221 ORTHO05D009204 5.1e-19 97.8 71 62.0
Aa31LG9G12820 Aethionema arabicum HOM05D007221 ORTHO05D009204 6.7e-19 97.4 97 52.6
arahy.Tifrunner.gnm1.ann1.50YYNM Arachis hypogaea HOM05D007221 ORTHO05D009204 6.7e-19 97.4 97 51.5
arahy.Tifrunner.gnm1.ann1.647QNX Arachis hypogaea HOM05D007221 ORTHO05D009204 6.7e-19 97.4 97 51.5
AL8G18350 Arabidopsis lyrata HOM05D007221 ORTHO05D009204 8.7e-19 97.1 73 60.3
Hund26574 Selenicereus undatus HOM05D007221 ORTHO05D009204 1.1e-18 96.7 72 61.1
MBI16_g31006_MAGBIO Magnolia biondii HOM05D007221 ORTHO05D009204 1.5e-18 96.3 99 52.5
CAN.G1226.17 Capsicum annuum HOM05D007221 ORTHO05D009204 1.9e-18 95.9 97 53.6
AT5G42765 Arabidopsis thaliana HOM05D007221 ORTHO05D009204 2.5e-18 95.5 73 60.3
Nn1g04985 Nelumbo nucifera HOM05D007221 ORTHO05D009204 2.5e-18 95.5 69 62.3
BcaB07g31048 Brassica carinata HOM05D007221 ORTHO05D009204 3.3e-18 95.1 73 61.6
THA.LOC104812558 Tarenaya hassleriana HOM05D007221 ORTHO05D009204 4.3e-18 94.7 73 61.6
AUR62035445 Chenopodium quinoa HOM05D007221 ORTHO05D009204 9.7e-18 93.6 97 53.6
SalBow7G4300 Salvia bowleyana HOM05D007221 ORTHO05D009204 9.7e-18 93.6 54 79.6
Sopen04g033980 Solanum pennellii HOM05D007221 ORTHO05D009204 1.3e-17 93.2 69 66.7
Carub.0008s0617 Capsella rubella HOM05D007221 ORTHO05D009204 1.6e-17 92.8 71 59.2
BraA09t37604Z Brassica rapa HOM05D007221 ORTHO05D009204 2.2e-17 92.4 73 58.9
Rhsim07G0239500 Rhododendron simsii HOM05D007221 ORTHO05D009204 2.2e-17 92.4 97 49.5
BcaC04g21975 Brassica carinata HOM05D007221 ORTHO05D009204 2.8e-17 92.0 73 58.9
C09p25270 Brassica napus HOM05D007221 ORTHO05D009204 2.8e-17 92.0 73 58.9
BolC9t55425H Brassica oleracea HOM05D007221 ORTHO05D009204 2.8e-17 92.0 73 58.9
AUR62039548 Chenopodium quinoa HOM05D007221 ORTHO05D009204 2.8e-17 92.0 97 52.6
Solyc04g080390.4 Solanum lycopersicum HOM05D007221 ORTHO05D009204 2.8e-17 92.0 69 65.2
PGSC0003DMG400003731 Solanum tuberosum HOM05D007221 ORTHO05D009204 2.8e-17 92.0 69 65.2
Migut.C00733 Erythranthe guttata HOM05D007221 ORTHO05D009204 3.7e-17 91.7 65 67.7
HanXRQChr16g0508501 Helianthus annuus HOM05D007221 ORTHO05D009204 3.7e-17 91.7 96 52.1
A09p19950 Brassica napus HOM05D007221 ORTHO05D009204 6.3e-17 90.9 73 58.9
Lj4A39T64 Lonicera japonica HOM05D007221 ORTHO05D009204 6.3e-17 90.9 70 62.9
PSO675G7833 Papaver somniferum HOM05D007221 ORTHO05D009204 6.3e-17 90.9 73 60.3
EL10Ac1g01796 Beta vulgaris HOM05D007221 ORTHO05D009204 2.4e-16 89.0 97 49.5
ECA232G4972 Erigeron canadensis HOM05D007221 ORTHO05D009204 3.1e-16 88.6 69 60.9
Ah.05g167430 Amaranthus hybridus HOM05D007221 ORTHO05D009204 5.3e-16 87.8 96 50.0
Lsat_1_v5_gn_4_119280 Lactuca sativa HOM05D007221 ORTHO05D009204 9.0e-16 87.0 95 49.5
PSO541G5695 Papaver somniferum HOM05D007221 ORTHO05D009204 7.7e-15 84.0 71 57.7
HPP92_018787 Vanilla planifolia HOM05D007221 ORTHO05D009204 3.8e-14 81.6 94 44.7
HPP92_018805 Vanilla planifolia HOM05D007221 ORTHO05D009204 3.8e-14 81.6 94 44.7
unitig_26.g9834 Utricularia gibba HOM05D007221 ORTHO05D009204 1.1e-13 80.1 48 77.1
Mapoly0024s0117 Marchantia polymorpha HOM05D007221 ORTHO05D009204 4.2e-13 78.2 95 45.3
vmacro04529 Vaccinium macrocarpon HOM05D007221 ORTHO05D009204 4.2e-13 78.2 89 47.2
HPP92_018706 Vanilla planifolia HOM05D007221 ORTHO05D009204 7.2e-13 77.4 69 53.6
Os03g0774400 Oryza sativa ssp. japonica HOM05D007221 ORTHO05D009204 9.4e-13 77.0 68 51.5
SMO356G0611 Selaginella moellendorffii HOM05D007221 ORTHO05D009204 1.6e-12 76.3 105 43.8
Manes.18G026801 Manihot esculenta HOM05D007221 ORTHO05D009204 2.7e-12 75.5 90 48.9
Zm00001eb059140 Zea mays HOM05D007221 ORTHO05D009204 4.6e-12 74.7 107 39.3
Pp3c15_4620 Physcomitrium patens HOM05D007221 ORTHO05D009204 6.1e-12 74.3 66 54.5
AagrBONN_evm.TU.Sc2ySwM_368.2172 Anthoceros agrestis HOM05D007221 ORTHO05D009204 4.8e-09 64.7 97 34.0
Duzib093G2110 Durio zibethinus HOM05D007221 ORTHO05D009204 7.7e-07 57.4 42 66.7
SGA_v2.0_scaffold54G19517 Striga asiatica HOM05D007221 ORTHO05D009204 7.7e-07 57.4 62 51.6
CBR_g36819 Chara braunii HOM05D007221 ORTHO05D009204 3.8e-06 55.1 60 45.0


User provided reference genes

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