Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0349711 Rosa chinensis HOM05D006696 ORTHO05D008683 0.0e+00 1256.5 626 100.0
FAN01G1519 Fragaria x ananassa HOM05D006696 ORTHO05D008683 0.0e+00 1076.2 630 83.3
FAN06G3694 Fragaria x ananassa HOM05D006696 ORTHO05D008683 4.3e-312 1074.3 630 83.3
FvH4_7g11430 Fragaria vesca HOM05D006696 ORTHO05D008683 3.9e-311 1070.8 630 83.0
FAN06G1977 Fragaria x ananassa HOM05D006696 ORTHO05D008683 2.5e-310 1068.1 630 82.9
FAN03G1153 Fragaria x ananassa HOM05D006696 ORTHO05D008683 4.0e-308 1060.8 629 82.0
MD07G1119000 Malus domestica HOM05D006696 ORTHO05D008683 2.1e-301 1038.5 588 84.0
Prupe.2G142200 Prunus persica HOM05D006696 ORTHO05D008683 3.4e-299 1031.2 654 76.1
COL.COLO4_24599 Corchorus olitorius HOM05D006696 ORTHO05D008683 3.2e-273 944.9 589 74.2
Rhsim01G0149400 Rhododendron simsii HOM05D006696 ORTHO05D008683 6.0e-272 940.6 638 72.6
Manes.01G267400 Manihot esculenta HOM05D006696 ORTHO05D008683 7.8e-272 940.3 652 70.4
Gohir.D13G120600 Gossypium hirsutum HOM05D006696 ORTHO05D008683 2.3e-271 938.7 632 70.7
Gorai.013G134800 Gossypium raimondii HOM05D006696 ORTHO05D008683 3.9e-271 937.9 632 70.6
Thecc.08G173400 Theobroma cacao HOM05D006696 ORTHO05D008683 1.1e-270 936.4 635 69.8
Hma1.2p1_0301F.1_g118560 Hydrangea macrophylla HOM05D006696 ORTHO05D008683 3.3e-270 934.9 579 76.5
Ciclev10019231m.g Citrus clementina HOM05D006696 ORTHO05D008683 7.3e-270 933.7 600 74.2
VMungo0331G0021 Vigna mungo HOM05D006696 ORTHO05D008683 9.5e-270 933.3 570 76.5
Lalb_Chr07g0189961 Lupinus albus HOM05D006696 ORTHO05D008683 2.8e-269 931.8 625 73.6
TWI14G1225 Tripterygium wilfordii HOM05D006696 ORTHO05D008683 3.6e-269 931.4 579 76.3
Gohir.A13G117300 Gossypium hirsutum HOM05D006696 ORTHO05D008683 6.2e-269 930.6 632 69.9
QL08p052869 Quercus lobata HOM05D006696 ORTHO05D008683 6.2e-269 930.6 599 75.3
Phvul.010G081400 Phaseolus vulgaris HOM05D006696 ORTHO05D008683 1.4e-268 929.5 644 70.0
CiPaw.01G264000 Carya illinoinensis HOM05D006696 ORTHO05D008683 5.2e-268 927.5 642 70.6
CSS0026641 Camellia sinensis var. sinensis HOM05D006696 ORTHO05D008683 1.2e-267 926.4 586 75.3
Glyma.03G028100 Glycine max HOM05D006696 ORTHO05D008683 2.6e-267 925.2 573 75.9
TAR629G0060 Trochodendron aralioides HOM05D006696 ORTHO05D008683 3.4e-267 924.9 589 75.7
Lj7C531T6 Lonicera japonica HOM05D006696 ORTHO05D008683 1.3e-266 922.9 589 74.2
PGSC0003DMG400025962 Solanum tuberosum HOM05D006696 ORTHO05D008683 1.3e-266 922.9 571 76.2
CSS0014714 Camellia sinensis var. sinensis HOM05D006696 ORTHO05D008683 1.7e-266 922.5 643 73.6
Potri.002G146100 Populus trichocarpa HOM05D006696 ORTHO05D008683 4.9e-266 921.0 635 71.2
Sopen01g036880 Solanum pennellii HOM05D006696 ORTHO05D008683 1.1e-265 919.8 571 75.8
Ca_19926_v3 Cicer arietinum L. HOM05D006696 ORTHO05D008683 1.4e-265 919.5 583 74.8
Nn6g34076 Nelumbo nucifera HOM05D006696 ORTHO05D008683 2.4e-265 918.7 582 74.6
Cc02_g24120 Coffea canephora HOM05D006696 ORTHO05D008683 9.2e-265 916.8 575 74.4
Psat7g231000 Pisum sativum HOM05D006696 ORTHO05D008683 1.6e-264 916.0 569 76.1
CAN.G388.34 Capsicum annuum HOM05D006696 ORTHO05D008683 2.7e-264 915.2 571 75.3
ClCG05G002380 Citrullus lanatus HOM05D006696 ORTHO05D008683 2.7e-264 915.2 593 74.0
Peaxi162Scf00013g03019 Petunia axillaris HOM05D006696 ORTHO05D008683 1.3e-263 912.9 572 76.0
arahy.Tifrunner.gnm1.ann1.30BUB6 Arachis hypogaea HOM05D006696 ORTHO05D008683 8.6e-263 910.2 582 75.3
Haze_16792 Corylus avellana HOM05D006696 ORTHO05D008683 8.6e-263 910.2 637 71.3
arahy.Tifrunner.gnm1.ann1.PBYD8I Arachis hypogaea HOM05D006696 ORTHO05D008683 3.3e-262 908.3 582 75.1
Medtr4g025130 Medicago truncatula HOM05D006696 ORTHO05D008683 5.6e-262 907.5 586 72.7
Sabra02G0113800 Salix brachista HOM05D006696 ORTHO05D008683 9.6e-262 906.7 634 69.9
Solyc01g091130.4 Solanum lycopersicum HOM05D006696 ORTHO05D008683 1.2e-261 906.4 571 74.8
Eucgr.D02468 Eucalyptus grandis HOM05D006696 ORTHO05D008683 2.1e-261 905.6 593 72.8
HanXRQChr03g0093971 Helianthus annuus HOM05D006696 ORTHO05D008683 6.2e-261 904.0 580 72.2
Nitab4.5_0010616g0010 Nicotiana tabacum HOM05D006696 ORTHO05D008683 8.1e-261 903.7 611 71.0
Atru.chr5.281 Acer truncatum HOM05D006696 ORTHO05D008683 2.4e-260 902.1 652 67.5
CsaV3_3G009820 Cucumis sativus L. HOM05D006696 ORTHO05D008683 6.8e-260 900.6 589 72.3
THA.LOC104814083 Tarenaya hassleriana HOM05D006696 ORTHO05D008683 2.0e-259 899.0 635 68.8
Lsat_1_v5_gn_3_132380 Lactuca sativa HOM05D006696 ORTHO05D008683 2.6e-259 898.7 571 73.0
Nitab4.5_0000457g0140 Nicotiana tabacum HOM05D006696 ORTHO05D008683 5.8e-259 897.5 600 71.7
MELO3C006203.2 Cucumis melo HOM05D006696 ORTHO05D008683 7.6e-259 897.1 632 69.1
vmacro21023 Vaccinium macrocarpon HOM05D006696 ORTHO05D008683 9.9e-259 896.7 720 63.1
Sed0011228 Sechium edule HOM05D006696 ORTHO05D008683 2.9e-258 895.2 590 71.9
Aqoxy7G00691 Aquilegia oxysepala HOM05D006696 ORTHO05D008683 4.9e-258 894.4 587 73.3
TPR.G7586 Trifolium pratense HOM05D006696 ORTHO05D008683 4.9e-258 894.4 582 73.7
MSTRG.20736 Avicennia marina HOM05D006696 ORTHO05D008683 3.2e-257 891.7 571 72.9
AUR62004189 Chenopodium quinoa HOM05D006696 ORTHO05D008683 2.7e-256 888.6 574 73.2
Ah.05g174590 Amaranthus hybridus HOM05D006696 ORTHO05D008683 5.1e-255 884.4 580 72.4
Migut.B01614 Erythranthe guttata HOM05D006696 ORTHO05D008683 6.6e-255 884.0 581 70.9
EL10Ac1g00866 Beta vulgaris HOM05D006696 ORTHO05D008683 1.9e-254 882.5 579 73.1
Hund27369 Selenicereus undatus HOM05D006696 ORTHO05D008683 1.3e-253 879.8 583 71.5
ECA232G1408 Erigeron canadensis HOM05D006696 ORTHO05D008683 4.8e-253 877.9 578 70.6
SGA_v2.0_scaffold95G28911 Striga asiatica HOM05D006696 ORTHO05D008683 7.6e-251 870.5 590 69.7
Aa31LG1G11340 Aethionema arabicum HOM05D006696 ORTHO05D008683 2.2e-250 869.0 570 72.6
MBI12_g20403_MAGBIO Magnolia biondii HOM05D006696 ORTHO05D008683 1.4e-249 866.3 578 72.0
unitig_22.g5383 Utricularia gibba HOM05D006696 ORTHO05D008683 1.9e-246 855.9 586 68.6
Lj3g0014279 Lotus japonicus HOM05D006696 ORTHO05D008683 9.6e-246 853.6 592 70.9
PSO782G1103 Papaver somniferum HOM05D006696 ORTHO05D008683 9.6e-246 853.6 572 71.7
PSO478G1798 Papaver somniferum HOM05D006696 ORTHO05D008683 2.1e-245 852.4 571 72.0
Duzib177G0277 Durio zibethinus HOM05D006696 ORTHO05D008683 2.8e-245 852.0 632 67.4
GSVIVG01027661001 Vitis vinifera HOM05D006696 ORTHO05D008683 6.4e-242 840.9 585 70.4
Cpa.g.sc611.2 Carica papaya HOM05D006696 ORTHO05D008683 5.5e-241 837.8 545 71.7
Sp1g37340 Schrenkiella parvula HOM05D006696 ORTHO05D008683 3.5e-240 835.1 584 70.4
AL1G10260 Arabidopsis lyrata HOM05D006696 ORTHO05D008683 1.5e-238 829.7 574 70.0
BcaB07g33486 Brassica carinata HOM05D006696 ORTHO05D008683 1.9e-238 829.3 592 68.9
Carub.0001s0021 Capsella rubella HOM05D006696 ORTHO05D008683 5.3e-236 821.2 571 68.7
C06p05680 Brassica napus HOM05D006696 ORTHO05D008683 2.6e-235 818.9 595 68.2
SalBow5G3816 Salvia bowleyana HOM05D006696 ORTHO05D008683 2.6e-235 818.9 547 71.3
A06p03080 Brassica napus HOM05D006696 ORTHO05D008683 1.3e-234 816.6 592 68.4
AT1G02020 Arabidopsis thaliana HOM05D006696 ORTHO05D008683 1.9e-233 812.8 575 67.7
BcaC08g43220 Brassica carinata HOM05D006696 ORTHO05D008683 1.2e-232 810.1 596 67.8
BolC6t35679H Brassica oleracea HOM05D006696 ORTHO05D008683 1.2e-232 810.1 596 67.8
Thhalv10007140m.g Eutrema salsugineum HOM05D006696 ORTHO05D008683 1.3e-231 806.6 581 67.6
Sc26g0001290 Simmondsia chinensis HOM05D006696 ORTHO05D008683 9.6e-230 800.4 550 68.7
BraA06t23521Z Brassica rapa HOM05D006696 ORTHO05D008683 2.8e-229 798.9 578 68.9
CDE04G1815 Ceratophyllum demersum HOM05D006696 ORTHO05D008683 3.7e-229 798.5 575 66.4
HPP92_022287 Vanilla planifolia HOM05D006696 ORTHO05D008683 3.1e-228 795.4 581 67.3
AUR62013656 Chenopodium quinoa HOM05D006696 ORTHO05D008683 2.0e-211 739.6 572 64.7
Actinidia33475 Actinidia chinensis HOM05D006696 ORTHO05D008683 1.8e-207 726.5 626 60.7
ATR0041G020 Amborella trichopoda HOM05D006696 ORTHO05D008683 3.9e-207 725.3 569 62.6
Os10g0190800 Oryza sativa ssp. japonica HOM05D006696 ORTHO05D008683 4.4e-198 695.3 574 61.5
Zm00001eb145800 Zea mays HOM05D006696 ORTHO05D008683 1.9e-193 679.9 572 60.0
SEGI_31859 Sequoiadendron giganteum HOM05D006696 ORTHO05D008683 4.2e-185 652.1 550 57.8
SMO011G0006 Selaginella moellendorffii HOM05D006696 ORTHO05D008683 9.5e-185 651.0 580 56.6
AagrBONN_evm.TU.Sc2ySwM_228.1723 Anthoceros agrestis HOM05D006696 ORTHO05D008683 1.7e-178 630.2 590 55.1
CARHR000330 Cardamine hirsuta HOM05D006696 ORTHO05D008683 5.0e-178 628.6 469 65.7
Mapoly0117s0009 Marchantia polymorpha HOM05D006696 ORTHO05D008683 3.7e-173 612.5 586 53.9
Pp3c18_8320 Physcomitrium patens HOM05D006696 ORTHO05D008683 2.6e-166 589.7 576 51.4
DCAR_015916 Daucus carota HOM05D006696 ORTHO05D008683 1.1e-161 574.3 373 70.8
Solyc01g091140.4 Solanum lycopersicum HOM05D006696 ORTHO05D008683 1.7e-133 480.7 527 50.7
Dinv32364 Davidia involucrata HOM05D006696 ORTHO05D008683 4.3e-121 439.5 255 80.4
CANSAT21G0759 Cannabis sativa HOM05D006696 ORTHO05D008683 1.4e-100 371.3 210 81.0
Oeu037929.1 Olea europaea HOM05D006696 ORTHO05D008683 2.8e-72 277.3 199 68.8
SGA_v2.0_scaffold581G53050 Striga asiatica HOM05D006696 ORTHO05D008683 8.9e-66 255.8 196 60.2
Sopen01g036900 Solanum pennellii HOM05D006696 ORTHO05D008683 1.6e-59 235.0 220 55.5
CARHR000320 Cardamine hirsuta HOM05D006696 ORTHO05D008683 9.8e-49 199.1 107 82.2
Atru.chr4.660 Acer truncatum HOM05D006696 ORTHO05D030753 6.2e-43 179.9 132 59.1
Sopen01g036890 Solanum pennellii HOM05D006696 ORTHO05D008683 1.6e-27 128.6 80 75.0
Zm00001eb027220 Zea mays HOM05D006696 ORTHO05D008683 3.6e-27 127.5 110 56.4
VMungo0720G2385 Vigna mungo HOM05D006696 ORTHO05D008683 1.3e-24 119.0 65 80.0
VMungo1309G0520 Vigna mungo HOM05D006696 ORTHO05D008683 2.1e-22 111.7 69 72.5
Phvul.010G066778 Phaseolus vulgaris HOM05D006696 ORTHO05D008683 1.1e-18 99.4 78 65.4
SalBow5G1567 Salvia bowleyana HOM05D006696 ORTHO05D008683 2.7e-14 84.7 43 88.4
Cpa.g.sc14.75 Carica papaya HOM05D006696 ORTHO05D008683 6.0e-14 83.6 37 97.3
Atru.chr4.903 Acer truncatum HOM05D006696 ORTHO05D030753 9.6e-12 76.3 39 87.2
Lsat_1_v5_gn_8_142581 Lactuca sativa HOM05D006696 ORTHO05D030753 6.9e-10 70.1 135 34.8
Zm00001eb027230 Zea mays HOM05D006696 ORTHO05D008683 1.6e-06 58.9 64 59.4


User provided reference genes

Program Settings