Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0349241 Rosa chinensis HOM05D005802 ORTHO05D006992 2.0e-53 212.2 114 100.0
RcHm_v2.0_Chr5g0028911 Rosa chinensis HOM05D005802 ORTHO05D006992 2.0e-45 185.7 112 92.0
FvH4_7g11150 Fragaria vesca HOM05D005802 ORTHO05D006992 3.0e-44 181.8 112 88.4
FAN06G1875 Fragaria x ananassa HOM05D005802 ORTHO05D006992 1.5e-43 179.5 112 86.6
FAN10G1300 Fragaria x ananassa HOM05D005802 ORTHO05D006992 1.5e-43 179.5 112 87.5
FAN06G3617 Fragaria x ananassa HOM05D005802 ORTHO05D006992 1.9e-43 179.1 112 86.6
FAN10G3200 Fragaria x ananassa HOM05D005802 ORTHO05D006992 1.9e-43 179.1 112 87.5
FAN03G1851 Fragaria x ananassa HOM05D005802 ORTHO05D006992 3.3e-43 178.3 112 88.4
MD02G1209900 Malus domestica HOM05D005802 ORTHO05D006992 2.0e-40 169.1 112 80.4
FAN01G2984 Fragaria x ananassa HOM05D005802 ORTHO05D006992 9.8e-40 166.8 103 89.3
Prupe.2G138600 Prunus persica HOM05D005802 ORTHO05D006992 2.9e-39 165.2 112 76.8
CANSAT56G0664 Cannabis sativa HOM05D005802 ORTHO05D006992 8.6e-36 153.7 113 74.3
Eucgr.D02489 Eucalyptus grandis HOM05D005802 ORTHO05D006992 1.5e-35 152.9 113 69.0
THA.LOC104802463 Tarenaya hassleriana HOM05D005802 ORTHO05D006992 3.3e-35 151.8 112 71.4
C08p35600 Brassica napus HOM05D005802 ORTHO05D006992 5.6e-35 151.0 112 71.4
BolC8t51149H Brassica oleracea HOM05D005802 ORTHO05D006992 5.6e-35 151.0 112 71.4
Cpa.g.sc49.162 Carica papaya HOM05D005802 ORTHO05D006992 7.3e-35 150.6 112 71.4
BcaC07g40584 Brassica carinata HOM05D005802 ORTHO05D006992 9.5e-35 150.2 112 70.5
A09p52850 Brassica napus HOM05D005802 ORTHO05D006992 2.1e-34 149.1 112 70.5
CiPaw.13G033000 Carya illinoinensis HOM05D005802 ORTHO05D006992 2.8e-34 148.7 112 69.6
Haze_02673 Corylus avellana HOM05D005802 ORTHO05D006992 2.8e-34 148.7 112 67.9
Thecc.01G381900 Theobroma cacao HOM05D005802 ORTHO05D006992 2.8e-34 148.7 112 70.5
CARHR171060 Cardamine hirsuta HOM05D005802 ORTHO05D006992 3.6e-34 148.3 112 69.6
Gohir.A12G094400 Gossypium hirsutum HOM05D005802 ORTHO05D006992 6.2e-34 147.5 112 69.6
AL5G42970 Arabidopsis lyrata HOM05D005802 ORTHO05D006992 1.1e-33 146.7 112 67.9
AT3G60660 Arabidopsis thaliana HOM05D005802 ORTHO05D006992 1.1e-33 146.7 112 68.8
COL.COLO4_12497 Corchorus olitorius HOM05D005802 ORTHO05D006992 1.1e-33 146.7 112 67.9
Aa31LG10G14950 Aethionema arabicum HOM05D005802 ORTHO05D006992 1.4e-33 146.4 112 68.8
Duzib133G1160 Durio zibethinus HOM05D005802 ORTHO05D006992 1.4e-33 146.4 112 68.8
Thhalv10006164m.g Eutrema salsugineum HOM05D005802 ORTHO05D006992 1.8e-33 146.0 112 69.6
Gohir.D12G097200 Gossypium hirsutum HOM05D005802 ORTHO05D006992 1.8e-33 146.0 112 68.8
Gorai.008G105800 Gossypium raimondii HOM05D005802 ORTHO05D006992 1.8e-33 146.0 112 68.8
PGR042G3152 Punica granatum HOM05D005802 ORTHO05D006992 1.8e-33 146.0 107 72.9
Manes.05G048500 Manihot esculenta HOM05D005802 ORTHO05D006992 5.2e-33 144.4 112 67.0
Carub.0005s2739 Capsella rubella HOM05D005802 ORTHO05D006992 8.9e-33 143.7 112 67.0
Sp5g02580 Schrenkiella parvula HOM05D005802 ORTHO05D006992 8.9e-33 143.7 112 67.9
Potri.014G060000 Populus trichocarpa HOM05D005802 ORTHO05D006992 4.4e-32 141.4 111 72.1
Rhsim01G0150000 Rhododendron simsii HOM05D005802 ORTHO05D006992 4.4e-32 141.4 112 67.0
GSVIVG01027639001 Vitis vinifera HOM05D005802 ORTHO05D006992 5.8e-32 141.0 112 66.1
Dinv44124 Davidia involucrata HOM05D005802 ORTHO05D006992 1.3e-31 139.8 112 65.2
QL04p039160 Quercus lobata HOM05D005802 ORTHO05D006992 1.3e-31 139.8 114 67.5
Hund27376 Selenicereus undatus HOM05D005802 ORTHO05D006992 1.3e-31 139.8 114 65.8
Sabra14G0043900 Salix brachista HOM05D005802 ORTHO05D006992 1.7e-31 139.4 111 71.2
Atru.chr5.259 Acer truncatum HOM05D005802 ORTHO05D006992 2.9e-31 138.7 111 69.4
Lj3g0015572 Lotus japonicus HOM05D005802 ORTHO05D006992 2.9e-31 138.7 112 65.2
Ah.05g173870 Amaranthus hybridus HOM05D005802 ORTHO05D006992 4.9e-31 137.9 111 62.2
Ciclev10021687m.g Citrus clementina HOM05D005802 ORTHO05D006992 6.4e-31 137.5 112 66.1
Lsat_1_v5_gn_4_44621 Lactuca sativa HOM05D005802 ORTHO05D006992 6.4e-31 137.5 109 66.1
SalBow5G5068 Salvia bowleyana HOM05D005802 ORTHO05D006992 1.4e-30 136.3 113 62.8
Actinidia12678 Actinidia chinensis HOM05D005802 ORTHO05D006992 1.9e-30 136.0 107 63.6
AUR62013665 Chenopodium quinoa HOM05D005802 ORTHO05D006992 1.9e-30 136.0 111 64.0
Sc02g0002770 Simmondsia chinensis HOM05D005802 ORTHO05D006992 1.9e-30 136.0 109 65.1
CSS0000774 Camellia sinensis var. sinensis HOM05D005802 ORTHO05D006992 2.4e-30 135.6 112 65.2
Phvul.010G077700 Phaseolus vulgaris HOM05D005802 ORTHO05D006992 2.4e-30 135.6 112 64.3
VMungo0331G0187 Vigna mungo HOM05D005802 ORTHO05D006992 2.4e-30 135.6 112 64.3
arahy.Tifrunner.gnm1.ann1.GQKS8P Arachis hypogaea HOM05D005802 ORTHO05D006992 9.2e-30 133.7 109 65.1
arahy.Tifrunner.gnm1.ann1.I9SF1K Arachis hypogaea HOM05D005802 ORTHO05D006992 9.2e-30 133.7 109 65.1
TWI23G1076 Tripterygium wilfordii HOM05D005802 ORTHO05D006992 9.2e-30 133.7 112 63.4
Glyma.01G137000 Glycine max HOM05D005802 ORTHO05D006992 1.2e-29 133.3 112 63.4
MSTRG.17165 Avicennia marina HOM05D005802 ORTHO05D006992 1.6e-29 132.9 112 62.5
ClCG09G008930 Citrullus lanatus HOM05D005802 ORTHO05D006992 2.7e-29 132.1 114 62.3
SGA_v2.0_scaffold153G36973 Striga asiatica HOM05D005802 ORTHO05D006992 3.5e-29 131.7 112 58.9
AUR62004168 Chenopodium quinoa HOM05D005802 ORTHO05D006992 4.6e-29 131.3 99 68.7
MELO3C021033.2 Cucumis melo HOM05D005802 ORTHO05D006992 7.8e-29 130.6 114 61.4
Sed0027573 Sechium edule HOM05D005802 ORTHO05D006992 7.8e-29 130.6 113 62.8
Cfa011175 Carpinus fangiana HOM05D005802 ORTHO05D006992 1.7e-28 129.4 102 65.7
HanXRQChr03g0088101 Helianthus annuus HOM05D005802 ORTHO05D006992 1.7e-28 129.4 101 65.3
CsaV3_7G026130 Cucumis sativus L. HOM05D005802 ORTHO05D006992 2.3e-28 129.0 114 61.4
TAR375G0577 Trochodendron aralioides HOM05D005802 ORTHO05D006992 2.3e-28 129.0 107 63.6
BraA09t40717Z Brassica rapa HOM05D005802 ORTHO05D006992 5.1e-28 127.9 176 46.0
Peaxi162Scf01052g00014 Petunia axillaris HOM05D005802 ORTHO05D006992 6.6e-28 127.5 113 55.8
SHI22577 Sapria himalayana HOM05D005802 ORTHO05D006992 6.6e-28 127.5 109 61.5
DCAR_025098 Daucus carota HOM05D005802 ORTHO05D006992 1.5e-27 126.3 104 67.3
CAN.G106.25 Capsicum annuum HOM05D005802 ORTHO05D006992 1.9e-27 125.9 110 60.9
ECA234G0875 Erigeron canadensis HOM05D005802 ORTHO05D006992 1.9e-27 125.9 106 60.4
RcHm_v2.0_Chr1g0349161 Rosa chinensis HOM05D005802 ORTHO05D006992 1.9e-27 125.9 100 72.0
PGSC0003DMG400007022 Solanum tuberosum HOM05D005802 ORTHO05D006992 2.5e-27 125.6 112 57.1
Medtr4g026180 Medicago truncatula HOM05D005802 ORTHO05D006992 3.3e-27 125.2 110 60.9
Migut.B01600 Erythranthe guttata HOM05D005802 ORTHO05D006992 4.3e-27 124.8 112 59.8
Oeu055514.1 Olea europaea HOM05D005802 ORTHO05D006992 4.3e-27 124.8 112 59.8
Solyc05g050900.4 Solanum lycopersicum HOM05D005802 ORTHO05D006992 7.3e-27 124.0 104 60.6
Nn6g34003 Nelumbo nucifera HOM05D005802 ORTHO05D006992 9.6e-27 123.6 107 64.5
Carub.0005s2750 Capsella rubella HOM05D005802 ORTHO05D006992 1.2e-26 123.2 97 68.0
Nitab4.5_0001329g0060 Nicotiana tabacum HOM05D005802 ORTHO05D006992 1.2e-26 123.2 112 55.4
Sopen05g029380 Solanum pennellii HOM05D005802 ORTHO05D006992 1.2e-26 123.2 104 60.6
Psat7g217800 Pisum sativum HOM05D005802 ORTHO05D006992 2.8e-26 122.1 110 58.2
RcHm_v2.0_Chr1g0349201 Rosa chinensis HOM05D005802 ORTHO05D006992 2.8e-26 122.1 75 90.7
Nitab4.5_0005050g0030 Nicotiana tabacum HOM05D005802 ORTHO05D006992 4.7e-26 121.3 104 59.6
TPR.G5024 Trifolium pratense HOM05D005802 ORTHO05D006992 4.7e-26 121.3 110 59.1
PSO017G7043 Papaver somniferum HOM05D005802 ORTHO05D006992 4.0e-25 118.2 111 57.7
Hma1.2p1_0072F.1_g038280 Hydrangea macrophylla HOM05D005802 ORTHO05D006992 6.9e-25 117.5 115 55.7
Cc02_g24280 Coffea canephora HOM05D005802 ORTHO05D006992 1.2e-24 116.7 106 57.5
PSO478G1061 Papaver somniferum HOM05D005802 ORTHO05D006992 1.2e-24 116.7 111 56.8
Aqoxy7G00743 Aquilegia oxysepala HOM05D005802 ORTHO05D006992 5.8e-24 114.4 105 58.1
vmacro21028 Vaccinium macrocarpon HOM05D005802 ORTHO05D006992 5.4e-22 107.8 112 53.6
Lj7A534G38 Lonicera japonica HOM05D000908 ORTHO05D000789 1.3e-20 103.2 76 71.1
Oeu045806.1 Olea europaea HOM05D005802 ORTHO05D006992 1.5e-19 99.8 75 68.0
Lalb_Chr12g0208011 Lupinus albus HOM05D005802 ORTHO05D006992 1.9e-19 99.4 74 71.6
Os07g0484500 Oryza sativa ssp. japonica HOM05D005802 ORTHO05D006992 1.9e-19 99.4 110 50.0
Ca_02431_v3 Cicer arietinum L. HOM05D005802 ORTHO05D006992 7.3e-19 97.4 110 48.2
ATR1153G072 Amborella trichopoda HOM05D005802 ORTHO05D006992 6.9e-17 90.9 95 51.6
CARHR170760 Cardamine hirsuta HOM05D005802 ORTHO05D006992 4.5e-16 88.2 74 62.2
Oeu051925.1 Olea europaea HOM05D005802 ORTHO05D006992 2.2e-15 85.9 77 62.3
CDE04G3422 Ceratophyllum demersum HOM05D005802 ORTHO05D006992 2.1e-13 79.3 111 40.5
Zm00001eb321530 Zea mays HOM05D005802 ORTHO05D006992 2.7e-13 79.0 96 45.8
Actinidia28320 Actinidia chinensis HOM05D005802 ORTHO05D006992 1.5e-11 73.2 61 57.4
Glyma.03G031532 Glycine max HOM05D005802 ORTHO05D006992 6.2e-10 67.8 81 51.9
EL10Ac1g00841 Beta vulgaris HOM05D005802 ORTHO05D006992 1.1e-09 67.0 48 66.7
Mapoly0010s0189 Marchantia polymorpha HOM05D005802 ORTHO05D006992 9.9e-08 60.5 92 35.9
RcHm_v2.0_Chr1g0349231 Rosa chinensis HOM05D005802 ORTHO05D006992 9.9e-08 60.5 30 90.0


User provided reference genes

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