Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0349201 Rosa chinensis HOM05D005802 ORTHO05D006992 9.3e-170 600.1 305 100.0
FAN06G1875 Fragaria x ananassa HOM05D005802 ORTHO05D006992 3.2e-61 239.6 359 47.9
FAN03G1851 Fragaria x ananassa HOM05D005802 ORTHO05D006992 5.5e-61 238.8 349 49.0
RcHm_v2.0_Chr5g0028911 Rosa chinensis HOM05D005802 ORTHO05D006992 7.9e-60 235.0 348 48.9
FAN06G3617 Fragaria x ananassa HOM05D005802 ORTHO05D006992 1.0e-59 234.6 349 47.9
FAN01G2984 Fragaria x ananassa HOM05D005802 ORTHO05D006992 2.3e-59 233.4 359 47.4
FAN10G1300 Fragaria x ananassa HOM05D005802 ORTHO05D006992 6.7e-59 231.9 349 47.9
FAN10G3200 Fragaria x ananassa HOM05D005802 ORTHO05D006992 3.3e-58 229.6 349 47.9
FvH4_7g11150 Fragaria vesca HOM05D005802 ORTHO05D006992 1.8e-56 223.8 284 52.8
MD02G1209900 Malus domestica HOM05D005802 ORTHO05D006992 1.0e-54 218.0 340 45.0
Prupe.2G138600 Prunus persica HOM05D005802 ORTHO05D006992 4.9e-54 215.7 349 45.0
CiPaw.13G033000 Carya illinoinensis HOM05D005802 ORTHO05D006992 2.7e-52 209.9 346 42.5
GSVIVG01027639001 Vitis vinifera HOM05D005802 ORTHO05D006992 1.5e-50 204.1 343 42.0
CANSAT56G0664 Cannabis sativa HOM05D005802 ORTHO05D006992 1.6e-49 200.7 345 42.6
PGR042G3152 Punica granatum HOM05D005802 ORTHO05D006992 2.1e-49 200.3 346 40.2
QL04p039160 Quercus lobata HOM05D005802 ORTHO05D006992 2.1e-49 200.3 344 41.0
Ciclev10021687m.g Citrus clementina HOM05D005802 ORTHO05D006992 2.0e-47 193.7 343 41.4
Potri.014G060000 Populus trichocarpa HOM05D005802 ORTHO05D006992 3.4e-47 193.0 341 41.6
COL.COLO4_12497 Corchorus olitorius HOM05D005802 ORTHO05D006992 5.9e-47 192.2 343 39.7
Haze_02673 Corylus avellana HOM05D005802 ORTHO05D006992 5.9e-47 192.2 347 40.1
Lj3g0015572 Lotus japonicus HOM05D005802 ORTHO05D006992 7.6e-47 191.8 343 40.2
Phvul.010G077700 Phaseolus vulgaris HOM05D005802 ORTHO05D006992 7.6e-47 191.8 343 39.9
Glyma.01G137000 Glycine max HOM05D005802 ORTHO05D006992 1.0e-46 191.4 343 40.2
Nn6g34003 Nelumbo nucifera HOM05D005802 ORTHO05D006992 1.0e-46 191.4 345 40.0
Thecc.01G381900 Theobroma cacao HOM05D005802 ORTHO05D006992 1.0e-46 191.4 342 39.2
Sabra14G0043900 Salix brachista HOM05D005802 ORTHO05D006992 1.3e-46 191.0 350 40.3
Manes.05G048500 Manihot esculenta HOM05D005802 ORTHO05D006992 1.7e-46 190.7 343 40.5
Eucgr.D02489 Eucalyptus grandis HOM05D005802 ORTHO05D006992 5.0e-46 189.1 343 41.1
Cpa.g.sc49.162 Carica papaya HOM05D005802 ORTHO05D006992 6.5e-46 188.7 341 39.9
Sc02g0002770 Simmondsia chinensis HOM05D005802 ORTHO05D006992 1.1e-45 188.0 345 38.0
Duzib133G1160 Durio zibethinus HOM05D005802 ORTHO05D006992 2.5e-45 186.8 340 40.3
THA.LOC104802463 Tarenaya hassleriana HOM05D005802 ORTHO05D006992 7.2e-45 185.3 345 39.4
Gohir.A12G094400 Gossypium hirsutum HOM05D005802 ORTHO05D006992 1.6e-44 184.1 346 40.5
Lsat_1_v5_gn_4_44621 Lactuca sativa HOM05D005802 ORTHO05D006992 2.1e-44 183.7 343 36.7
AUR62013665 Chenopodium quinoa HOM05D005802 ORTHO05D006992 4.6e-44 182.6 343 39.4
Gohir.D12G097200 Gossypium hirsutum HOM05D005802 ORTHO05D006992 6.1e-44 182.2 346 39.9
TAR375G0577 Trochodendron aralioides HOM05D005802 ORTHO05D006992 6.1e-44 182.2 341 38.4
Actinidia12678 Actinidia chinensis HOM05D005802 ORTHO05D006992 1.0e-43 181.4 338 39.3
Aa31LG10G14950 Aethionema arabicum HOM05D005802 ORTHO05D006992 1.0e-43 181.4 350 38.3
arahy.Tifrunner.gnm1.ann1.I9SF1K Arachis hypogaea HOM05D005802 ORTHO05D006992 1.3e-43 181.0 340 38.2
TPR.G5024 Trifolium pratense HOM05D005802 ORTHO05D006992 1.8e-43 180.6 341 37.8
Migut.B01600 Erythranthe guttata HOM05D005802 ORTHO05D006992 2.3e-43 180.3 341 37.8
TWI23G1076 Tripterygium wilfordii HOM05D005802 ORTHO05D006992 2.3e-43 180.3 341 39.0
MSTRG.17165 Avicennia marina HOM05D005802 ORTHO05D006992 3.0e-43 179.9 341 38.4
Gorai.008G105800 Gossypium raimondii HOM05D005802 ORTHO05D006992 5.1e-43 179.1 346 40.2
Rhsim01G0150000 Rhododendron simsii HOM05D005802 ORTHO05D006992 8.7e-43 178.3 343 37.9
Psat7g217800 Pisum sativum HOM05D005802 ORTHO05D006992 1.9e-42 177.2 341 37.8
AUR62004168 Chenopodium quinoa HOM05D005802 ORTHO05D006992 3.3e-42 176.4 343 39.4
C08p35600 Brassica napus HOM05D005802 ORTHO05D006992 4.3e-42 176.0 350 38.3
AT3G60660 Arabidopsis thaliana HOM05D005802 ORTHO05D006992 7.4e-42 175.3 353 38.2
BolC8t51149H Brassica oleracea HOM05D005802 ORTHO05D006992 1.3e-41 174.5 350 38.0
CSS0000774 Camellia sinensis var. sinensis HOM05D005802 ORTHO05D006992 1.3e-41 174.5 343 39.4
SalBow5G5068 Salvia bowleyana HOM05D005802 ORTHO05D006992 1.7e-41 174.1 345 38.0
Atru.chr5.259 Acer truncatum HOM05D005802 ORTHO05D006992 2.2e-41 173.7 341 39.6
Cfa011175 Carpinus fangiana HOM05D005802 ORTHO05D006992 2.8e-41 173.3 350 37.4
VMungo0331G0187 Vigna mungo HOM05D005802 ORTHO05D006992 2.8e-41 173.3 294 40.1
HanXRQChr03g0088101 Helianthus annuus HOM05D005802 ORTHO05D006992 3.7e-41 172.9 349 35.2
PSO017G7043 Papaver somniferum HOM05D005802 ORTHO05D006992 3.7e-41 172.9 345 37.4
Thhalv10006164m.g Eutrema salsugineum HOM05D005802 ORTHO05D006992 8.2e-41 171.8 350 38.0
CARHR171060 Cardamine hirsuta HOM05D005802 ORTHO05D006992 1.1e-40 171.4 350 37.4
PSO478G1061 Papaver somniferum HOM05D005802 ORTHO05D006992 1.4e-40 171.0 345 37.1
Sp5g02580 Schrenkiella parvula HOM05D005802 ORTHO05D006992 1.4e-40 171.0 350 37.7
Medtr4g026180 Medicago truncatula HOM05D005802 ORTHO05D006992 1.8e-40 170.6 341 37.5
Aqoxy7G00743 Aquilegia oxysepala HOM05D005802 ORTHO05D006992 3.1e-40 169.9 342 36.3
arahy.Tifrunner.gnm1.ann1.GQKS8P Arachis hypogaea HOM05D005802 ORTHO05D006992 4.1e-40 169.5 376 35.6
A09p52850 Brassica napus HOM05D005802 ORTHO05D006992 4.1e-40 169.5 350 37.1
BcaC07g40584 Brassica carinata HOM05D005802 ORTHO05D006992 5.3e-40 169.1 351 37.3
AL5G42970 Arabidopsis lyrata HOM05D005802 ORTHO05D006992 9.1e-40 168.3 346 38.4
ClCG09G008930 Citrullus lanatus HOM05D005802 ORTHO05D006992 2.6e-39 166.8 341 37.5
Cc02_g24280 Coffea canephora HOM05D005802 ORTHO05D006992 2.6e-39 166.8 343 36.7
DCAR_025098 Daucus carota HOM05D005802 ORTHO05D006992 3.4e-39 166.4 345 36.8
ECA234G0875 Erigeron canadensis HOM05D005802 ORTHO05D006992 7.7e-39 165.2 350 36.6
Sed0027573 Sechium edule HOM05D005802 ORTHO05D006992 5.0e-38 162.5 341 36.4
Hund27376 Selenicereus undatus HOM05D005802 ORTHO05D006992 6.5e-38 162.2 343 36.7
BraA09t40717Z Brassica rapa HOM05D005802 ORTHO05D006992 1.1e-37 161.4 376 35.6
Peaxi162Scf01052g00014 Petunia axillaris HOM05D005802 ORTHO05D006992 1.1e-37 161.4 343 35.3
Solyc05g050900.4 Solanum lycopersicum HOM05D005802 ORTHO05D006992 1.9e-37 160.6 343 34.7
Sopen05g029380 Solanum pennellii HOM05D005802 ORTHO05D006992 2.5e-37 160.2 343 34.7
PGSC0003DMG400007022 Solanum tuberosum HOM05D005802 ORTHO05D006992 2.5e-37 160.2 343 35.6
CAN.G106.25 Capsicum annuum HOM05D005802 ORTHO05D006992 3.2e-37 159.8 343 34.7
Dinv44124 Davidia involucrata HOM05D005802 ORTHO05D006992 1.6e-36 157.5 294 39.8
Carub.0005s2739 Capsella rubella HOM05D005802 ORTHO05D006992 3.6e-36 156.4 329 37.7
Carub.0005s2750 Capsella rubella HOM05D005802 ORTHO05D006992 1.4e-35 154.5 334 35.0
SGA_v2.0_scaffold153G36973 Striga asiatica HOM05D005802 ORTHO05D006992 3.0e-35 153.3 284 38.4
CsaV3_7G026130 Cucumis sativus L. HOM05D005802 ORTHO05D006992 5.1e-35 152.5 341 36.7
Nitab4.5_0001329g0060 Nicotiana tabacum HOM05D005802 ORTHO05D006992 1.4e-32 144.4 333 32.4
Oeu051925.1 Olea europaea HOM05D005802 ORTHO05D006992 9.1e-32 141.7 287 35.2
Os07g0484500 Oryza sativa ssp. japonica HOM05D005802 ORTHO05D006992 2.2e-30 137.1 339 32.2
Lj7A534G38 Lonicera japonica HOM05D000908 ORTHO05D000789 2.9e-30 136.7 298 33.9
vmacro21028 Vaccinium macrocarpon HOM05D005802 ORTHO05D006992 1.4e-29 134.4 345 33.6
ATR1153G072 Amborella trichopoda HOM05D005802 ORTHO05D006992 1.9e-29 134.0 339 32.7
RcHm_v2.0_Chr1g0349231 Rosa chinensis HOM05D005802 ORTHO05D006992 2.7e-28 130.2 196 45.9
MELO3C021033.2 Cucumis melo HOM05D005802 ORTHO05D006992 1.4e-27 127.9 269 37.2
RcHm_v2.0_Chr1g0349241 Rosa chinensis HOM05D005802 ORTHO05D006992 2.0e-26 124.0 75 90.7
CDE04G3422 Ceratophyllum demersum HOM05D005802 ORTHO05D006992 4.4e-26 122.9 356 30.6
Ca_02431_v3 Cicer arietinum L. HOM05D005802 ORTHO05D006992 4.4e-26 122.9 293 33.4
Actinidia28320 Actinidia chinensis HOM05D005802 ORTHO05D006992 1.3e-25 121.3 292 34.6
EL10Ac1g00841 Beta vulgaris HOM05D005802 ORTHO05D006992 8.2e-25 118.6 343 30.0
Zm00001eb321530 Zea mays HOM05D005802 ORTHO05D006992 2.4e-24 117.1 340 30.6
Lalb_Chr12g0208021 Lupinus albus HOM05D005802 ORTHO05D006992 3.1e-24 116.7 199 40.2
Nitab4.5_0005050g0030 Nicotiana tabacum HOM05D005802 ORTHO05D006992 5.9e-23 112.5 342 29.5
TAR375G0251 Trochodendron aralioides HOM05D005802 ORTHO05D006992 1.1e-21 108.2 182 39.6
Ah.05g173870 Amaranthus hybridus HOM05D005802 ORTHO05D006992 3.2e-21 106.7 74 70.3
Oeu045806.1 Olea europaea HOM05D005802 ORTHO05D006992 2.1e-20 104.0 88 60.2
Lalb_Chr12g0208011 Lupinus albus HOM05D005802 ORTHO05D006992 4.7e-20 102.8 74 71.6
Oeu055514.1 Olea europaea HOM05D005802 ORTHO05D006992 8.0e-20 102.1 74 67.6
Oeu051926.1 Olea europaea HOM05D005802 ORTHO05D006992 3.3e-18 96.7 174 36.2
FAN03G0906 Fragaria x ananassa HOM05D005802 ORTHO05D006992 4.4e-18 96.3 115 54.8
SHI22577 Sapria himalayana HOM05D005802 ORTHO05D006992 7.5e-18 95.5 74 63.5
FAN03G0348 Fragaria x ananassa HOM05D005802 ORTHO05D006992 2.8e-17 93.6 115 52.2
CARHR170760 Cardamine hirsuta HOM05D005802 ORTHO05D006992 1.1e-16 91.7 74 62.2
RcHm_v2.0_Chr1g0349251 Rosa chinensis HOM05D005802 ORTHO05D006992 9.1e-16 88.6 50 88.0
RcHm_v2.0_Chr1g0349161 Rosa chinensis HOM05D005802 ORTHO05D006992 1.6e-15 87.8 182 42.3
Hma1.2p1_0072F.1_g038280 Hydrangea macrophylla HOM05D005802 ORTHO05D006992 2.9e-14 83.6 74 59.5
ECA240G2706 Erigeron canadensis HOM05D001255 ORTHO05D001246 2.1e-12 77.4 132 41.7
Ah.05g173880 Amaranthus hybridus HOM05D005802 ORTHO05D006992 3.6e-12 76.6 98 49.0
Cc00_g05160 Coffea canephora HOM05D005802 ORTHO05D006992 4.7e-12 76.3 108 44.4
Cc00_g05150 Coffea canephora HOM05D005802 ORTHO05D006992 1.4e-11 74.7 108 43.5
Mapoly0010s0189 Marchantia polymorpha HOM05D005802 ORTHO05D006992 6.8e-11 72.4 333 23.4
Glyma.03G031532 Glycine max HOM05D005802 ORTHO05D006992 2.0e-10 70.9 82 51.2
Pp3c6_12030 Physcomitrium patens HOM05D005802 ORTHO05D006992 2.0e-10 70.9 330 26.1
C04p32020 Brassica napus HOM05D010895 ORTHO05D012939 3.4e-10 70.1 91 50.5
Glyma.03G031466 Glycine max HOM05D005802 ORTHO05D006992 1.7e-09 67.8 68 52.9
BolC4t24754H Brassica oleracea HOM05D005802 ORTHO05D006992 2.2e-09 67.4 90 50.0
Actinidia33479 Actinidia chinensis HOM05D005802 ORTHO05D006992 1.1e-08 65.1 170 30.0
SMO347G0664 Selaginella moellendorffii HOM05D005802 ORTHO05D006992 2.4e-08 63.9 105 38.1
AagrBONN_evm.TU.Sc2ySwM_368.1567 Anthoceros agrestis HOM05D005802 ORTHO05D006992 5.4e-08 62.8 332 23.5
SHI22578 Sapria himalayana HOM05D005802 ORTHO05D006992 2.7e-07 60.5 36 80.6


User provided reference genes

Program Settings