Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0349171 Rosa chinensis HOM05D005802 ORTHO05D006992 7.6e-25 116.3 57 100.0
FAN03G0906 Fragaria x ananassa HOM05D005802 ORTHO05D006992 1.2e-22 109.0 58 96.6
FAN10G1300 Fragaria x ananassa HOM05D005802 ORTHO05D006992 1.2e-22 109.0 58 96.6
FAN10G3200 Fragaria x ananassa HOM05D005802 ORTHO05D006992 1.2e-22 109.0 58 96.6
FAN03G1851 Fragaria x ananassa HOM05D005802 ORTHO05D006992 2.1e-22 108.2 58 94.8
RcHm_v2.0_Chr5g0028911 Rosa chinensis HOM05D005802 ORTHO05D006992 2.7e-22 107.8 58 94.8
FAN06G1875 Fragaria x ananassa HOM05D005802 ORTHO05D006992 3.5e-22 107.5 58 94.8
FAN06G3617 Fragaria x ananassa HOM05D005802 ORTHO05D006992 3.5e-22 107.5 58 94.8
FAN03G0348 Fragaria x ananassa HOM05D005802 ORTHO05D006992 6.0e-22 106.7 58 94.8
FAN01G2984 Fragaria x ananassa HOM05D005802 ORTHO05D006992 7.9e-22 106.3 58 94.8
RcHm_v2.0_Chr1g0349231 Rosa chinensis HOM05D005802 ORTHO05D006992 1.1e-20 102.4 58 91.4
Peaxi162Scf01052g00014 Petunia axillaris HOM05D005802 ORTHO05D006992 2.5e-20 101.3 56 91.1
AL5G42970 Arabidopsis lyrata HOM05D005802 ORTHO05D006992 1.3e-19 99.0 56 89.3
AT3G60660 Arabidopsis thaliana HOM05D005802 ORTHO05D006992 1.3e-19 99.0 56 89.3
PGR042G3152 Punica granatum HOM05D005802 ORTHO05D006992 1.3e-19 99.0 58 84.5
Sabra14G0043900 Salix brachista HOM05D005802 ORTHO05D006992 1.3e-19 99.0 56 89.3
CSS0000774 Camellia sinensis var. sinensis HOM05D005802 ORTHO05D006992 2.2e-19 98.2 56 89.3
CARHR171060 Cardamine hirsuta HOM05D005802 ORTHO05D006992 2.2e-19 98.2 55 90.9
Gohir.A12G094400 Gossypium hirsutum HOM05D005802 ORTHO05D006992 2.8e-19 97.8 56 87.5
Gohir.D12G097200 Gossypium hirsutum HOM05D005802 ORTHO05D006992 2.8e-19 97.8 56 87.5
Gorai.008G105800 Gossypium raimondii HOM05D005802 ORTHO05D006992 2.8e-19 97.8 56 87.5
Potri.014G060000 Populus trichocarpa HOM05D005802 ORTHO05D006992 2.8e-19 97.8 56 87.5
Prupe.2G138600 Prunus persica HOM05D005802 ORTHO05D006992 2.8e-19 97.8 58 89.7
CANSAT56G0664 Cannabis sativa HOM05D005802 ORTHO05D006992 3.7e-19 97.4 56 85.7
AUR62004168 Chenopodium quinoa HOM05D005802 ORTHO05D006992 3.7e-19 97.4 58 84.5
COL.COLO4_12497 Corchorus olitorius HOM05D005802 ORTHO05D006992 3.7e-19 97.4 56 89.3
Actinidia12678 Actinidia chinensis HOM05D005802 ORTHO05D006992 4.8e-19 97.1 57 87.7
Actinidia28320 Actinidia chinensis HOM05D005802 ORTHO05D006992 4.8e-19 97.1 57 87.7
MSTRG.17165 Avicennia marina HOM05D005802 ORTHO05D006992 4.8e-19 97.1 56 85.7
CAN.G106.25 Capsicum annuum HOM05D005802 ORTHO05D006992 4.8e-19 97.1 56 87.5
Ciclev10021687m.g Citrus clementina HOM05D005802 ORTHO05D006992 4.8e-19 97.1 56 89.3
CiPaw.13G033000 Carya illinoinensis HOM05D005802 ORTHO05D006992 8.2e-19 96.3 58 84.5
AUR62013665 Chenopodium quinoa HOM05D005802 ORTHO05D006992 8.2e-19 96.3 58 82.8
Solyc05g050900.4 Solanum lycopersicum HOM05D005802 ORTHO05D006992 8.2e-19 96.3 56 83.9
Sopen05g029380 Solanum pennellii HOM05D005802 ORTHO05D006992 8.2e-19 96.3 56 83.9
PGSC0003DMG400007022 Solanum tuberosum HOM05D005802 ORTHO05D006992 8.2e-19 96.3 56 83.9
Manes.05G048500 Manihot esculenta HOM05D005802 ORTHO05D006992 1.1e-18 95.9 58 82.8
QL04p039160 Quercus lobata HOM05D005802 ORTHO05D006992 1.1e-18 95.9 56 85.7
Thecc.01G381900 Theobroma cacao HOM05D005802 ORTHO05D006992 1.1e-18 95.9 53 92.5
CsaV3_7G026130 Cucumis sativus L. HOM05D005802 ORTHO05D006992 1.8e-18 95.1 53 90.6
FAN10G4230 Fragaria x ananassa HOM05D005802 ORTHO05D006992 1.8e-18 95.1 52 90.4
Rhsim01G0150000 Rhododendron simsii HOM05D005802 ORTHO05D006992 1.8e-18 95.1 56 87.5
Sed0027573 Sechium edule HOM05D005802 ORTHO05D006992 1.8e-18 95.1 54 87.0
vmacro21028 Vaccinium macrocarpon HOM05D005802 ORTHO05D006992 1.8e-18 95.1 56 87.5
Aa31LG10G14950 Aethionema arabicum HOM05D005802 ORTHO05D006992 2.4e-18 94.7 56 85.7
Cpa.g.sc49.162 Carica papaya HOM05D005802 ORTHO05D006992 2.4e-18 94.7 54 87.0
ClCG09G008930 Citrullus lanatus HOM05D005802 ORTHO05D006992 2.4e-18 94.7 54 85.2
Medtr4g026180 Medicago truncatula HOM05D005802 ORTHO05D006992 2.4e-18 94.7 56 82.1
Phvul.010G077700 Phaseolus vulgaris HOM05D005802 ORTHO05D006992 2.4e-18 94.7 56 83.9
Duzib133G1160 Durio zibethinus HOM05D005802 ORTHO05D006992 3.1e-18 94.4 53 88.7
Glyma.01G137000 Glycine max HOM05D005802 ORTHO05D006992 3.1e-18 94.4 56 82.1
Lj3g0015572 Lotus japonicus HOM05D005802 ORTHO05D006992 3.1e-18 94.4 56 82.1
TWI23G1076 Tripterygium wilfordii HOM05D005802 ORTHO05D006992 3.1e-18 94.4 56 83.9
ATR1153G072 Amborella trichopoda HOM05D005802 ORTHO05D006992 4.1e-18 94.0 56 85.7
Haze_02673 Corylus avellana HOM05D005802 ORTHO05D006992 4.1e-18 94.0 56 85.7
Eucgr.D02489 Eucalyptus grandis HOM05D005802 ORTHO05D006992 4.1e-18 94.0 58 81.0
Atru.chr5.259 Acer truncatum HOM05D005802 ORTHO05D006992 5.3e-18 93.6 53 90.6
Sp5g02580 Schrenkiella parvula HOM05D005802 ORTHO05D006992 5.3e-18 93.6 55 87.3
Sc02g0002770 Simmondsia chinensis HOM05D005802 ORTHO05D006992 5.3e-18 93.6 58 82.8
DCAR_025098 Daucus carota HOM05D005802 ORTHO05D006992 6.9e-18 93.2 54 83.3
MD02G1209900 Malus domestica HOM05D005802 ORTHO05D006992 6.9e-18 93.2 55 87.3
Nn6g34003 Nelumbo nucifera HOM05D005802 ORTHO05D006992 6.9e-18 93.2 58 82.8
SalBow5G5068 Salvia bowleyana HOM05D005802 ORTHO05D006992 6.9e-18 93.2 56 80.4
BcaC07g40584 Brassica carinata HOM05D005802 ORTHO05D006992 9.0e-18 92.8 55 87.3
A09p52850 Brassica napus HOM05D005802 ORTHO05D006992 9.0e-18 92.8 55 87.3
C08p35600 Brassica napus HOM05D005802 ORTHO05D006992 9.0e-18 92.8 55 87.3
BolC8t51149H Brassica oleracea HOM05D005802 ORTHO05D006992 9.0e-18 92.8 55 87.3
Migut.B01600 Erythranthe guttata HOM05D005802 ORTHO05D006992 9.0e-18 92.8 54 83.3
Thhalv10006164m.g Eutrema salsugineum HOM05D005802 ORTHO05D006992 9.0e-18 92.8 55 87.3
TPR.G5024 Trifolium pratense HOM05D005802 ORTHO05D006992 9.0e-18 92.8 56 82.1
TAR375G0251 Trochodendron aralioides HOM05D005802 ORTHO05D006992 9.0e-18 92.8 56 82.1
TAR375G0577 Trochodendron aralioides HOM05D005802 ORTHO05D006992 9.0e-18 92.8 56 82.1
Ah.05g173880 Amaranthus hybridus HOM05D005802 ORTHO05D006992 1.2e-17 92.4 58 81.0
Nitab4.5_0005050g0030 Nicotiana tabacum HOM05D005802 ORTHO05D006992 1.5e-17 92.0 55 80.0
arahy.Tifrunner.gnm1.ann1.I9SF1K Arachis hypogaea HOM05D005802 ORTHO05D006992 2.0e-17 91.7 56 80.4
Cfa011175 Carpinus fangiana HOM05D005802 ORTHO05D006992 2.0e-17 91.7 58 82.8
EL10Ac1g00841 Beta vulgaris HOM05D005802 ORTHO05D006992 2.6e-17 91.3 58 79.3
ECA234G0875 Erigeron canadensis HOM05D005802 ORTHO05D006992 2.6e-17 91.3 56 82.1
Lsat_1_v5_gn_4_44621 Lactuca sativa HOM05D005802 ORTHO05D006992 3.4e-17 90.9 58 81.0
BraA09t40717Z Brassica rapa HOM05D005802 ORTHO05D006992 4.5e-17 90.5 55 85.5
HanXRQChr03g0088101 Helianthus annuus HOM05D005802 ORTHO05D006992 5.9e-17 90.1 56 78.6
Lalb_Chr12g0208021 Lupinus albus HOM05D005802 ORTHO05D006992 5.9e-17 90.1 56 80.4
THA.LOC104802463 Tarenaya hassleriana HOM05D005802 ORTHO05D006992 5.9e-17 90.1 56 80.4
Oeu051926.1 Olea europaea HOM05D005802 ORTHO05D006992 1.0e-16 89.4 57 78.9
Aqoxy7G00743 Aquilegia oxysepala HOM05D005802 ORTHO05D006992 1.3e-16 89.0 55 80.0
GSVIVG01027639001 Vitis vinifera HOM05D005802 ORTHO05D006992 1.3e-16 89.0 58 79.3
PSO017G7043 Papaver somniferum HOM05D005802 ORTHO05D006992 1.7e-16 88.6 58 79.3
PSO478G1061 Papaver somniferum HOM05D005802 ORTHO05D006992 1.7e-16 88.6 58 79.3
Hund27376 Selenicereus undatus HOM05D005802 ORTHO05D006992 1.7e-16 88.6 56 78.6
Actinidia33479 Actinidia chinensis HOM05D005802 ORTHO05D006992 2.9e-16 87.8 57 78.9
Psat7g217800 Pisum sativum HOM05D005802 ORTHO05D006992 2.9e-16 87.8 56 76.8
Carub.0005s2739 Capsella rubella HOM05D005802 ORTHO05D006992 6.5e-16 86.7 44 93.2
Carub.0005s2750 Capsella rubella HOM05D005802 ORTHO05D006992 6.5e-16 86.7 44 93.2
CDE04G3422 Ceratophyllum demersum HOM05D005802 ORTHO05D006992 1.4e-15 85.5 58 75.9
Cc02_g24280 Coffea canephora HOM05D005802 ORTHO05D006992 1.9e-15 85.1 56 73.2
Os07g0484500 Oryza sativa ssp. japonica HOM05D005802 ORTHO05D006992 9.3e-15 82.8 53 79.2
Nitab4.5_0001329g0060 Nicotiana tabacum HOM05D005802 ORTHO05D006992 2.1e-14 81.6 45 82.2
Zm00001eb321530 Zea mays HOM05D005802 ORTHO05D006992 1.0e-13 79.3 52 78.8
arahy.Tifrunner.gnm1.ann1.GQKS8P Arachis hypogaea HOM05D005802 ORTHO05D006992 5.7e-12 73.6 92 48.9
SMO347G0664 Selaginella moellendorffii HOM05D005802 ORTHO05D006992 5.7e-12 73.6 52 69.2
AagrBONN_evm.TU.Sc2ySwM_368.1567 Anthoceros agrestis HOM05D005802 ORTHO05D006992 7.4e-12 73.2 53 67.9
Mapoly0010s0189 Marchantia polymorpha HOM05D005802 ORTHO05D006992 2.2e-11 71.6 55 65.5
Dinv44124 Davidia involucrata HOM05D005802 ORTHO05D006992 4.8e-11 70.5 43 74.4
Pp3c6_12030 Physcomitrium patens HOM05D005802 ORTHO05D006992 8.2e-11 69.7 44 72.7
Dinv44127 Davidia involucrata HOM05D005802 ORTHO05D006992 1.1e-10 69.3 43 74.4
FvH4_7g11150 Fragaria vesca HOM05D005802 ORTHO05D006992 3.1e-10 67.8 33 97.0
RcHm_v2.0_Chr1g0349251 Rosa chinensis HOM05D005802 ORTHO05D006992 9.1e-10 66.2 33 93.9
Cc00_g05160 Coffea canephora HOM05D005802 ORTHO05D006992 1.0e-08 62.8 47 70.2
Cc00_g05150 Coffea canephora HOM05D005802 ORTHO05D006992 1.7e-08 62.0 50 68.0
Ca_02431_v3 Cicer arietinum L. HOM05D005802 ORTHO05D006992 1.9e-07 58.5 41 65.9
VMungo0331G0187 Vigna mungo HOM05D005802 ORTHO05D006992 4.2e-07 57.4 31 83.9
Lj7A534G38 Lonicera japonica HOM05D000908 ORTHO05D000789 1.2e-06 55.8 31 83.9
SHI22578 Sapria himalayana HOM05D005802 ORTHO05D006992 3.6e-06 54.3 33 72.7
SGA_v2.0_scaffold153G36973 Striga asiatica HOM05D005802 ORTHO05D006992 3.6e-06 54.3 33 72.7
Oeu051925.1 Olea europaea HOM05D005802 ORTHO05D006992 4.7e-06 53.9 32 75.0


User provided reference genes

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